Wall clock time and date at job start Tue Mar 31 2020 11:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 C 1.50701 * 109.46802 * 239.99877 * 2 1 3 5 5 H 1.08000 * 119.99675 * 236.16911 * 4 2 1 6 6 C 1.37877 * 119.99934 * 56.17897 * 4 2 1 7 7 N 1.31513 * 119.99707 * 197.30887 * 6 4 2 8 8 Si 1.86796 * 120.00261 * 17.30700 * 6 4 2 9 9 H 1.48501 * 109.47096 * 87.03884 * 8 6 4 10 10 H 1.48498 * 109.47337 * 207.04099 * 8 6 4 11 11 H 1.48507 * 109.47102 * 327.04423 * 8 6 4 12 12 C 1.52997 * 109.47007 * 120.00266 * 2 1 3 13 13 N 1.46898 * 109.47080 * 299.99651 * 12 2 1 14 14 C 1.46901 * 111.00333 * 180.02562 * 13 12 2 15 15 H 1.09006 * 112.84365 * 336.19572 * 14 13 12 16 16 C 1.53777 * 113.69332 * 107.46571 * 14 13 12 17 17 C 1.54048 * 87.08038 * 139.99117 * 16 14 13 18 18 H 1.09004 * 113.61555 * 89.06717 * 17 16 14 19 19 O 1.42890 * 113.69713 * 220.05388 * 17 16 14 20 20 C 1.35903 * 117.00106 * 254.39872 * 19 17 16 21 21 C 1.38739 * 120.05333 * 5.04722 * 20 19 17 22 22 C 1.38144 * 119.94110 * 179.69858 * 21 20 19 23 23 C 1.38261 * 120.05559 * 0.59297 * 22 21 20 24 24 C 1.38268 * 120.11646 * 359.67444 * 23 22 21 25 25 C 1.38146 * 120.05188 * 0.02926 * 24 23 22 26 26 C 1.53784 * 113.61663 * 205.00317 * 14 13 12 27 27 C 1.53003 * 113.61216 * 334.48021 * 26 14 13 28 28 C 1.53001 * 113.61395 * 105.30060 * 26 14 13 29 29 H 1.08999 * 109.47076 * 306.60307 * 1 2 3 30 30 H 1.08993 * 109.46978 * 66.59935 * 1 2 3 31 31 H 1.08999 * 109.47216 * 186.60301 * 1 2 3 32 32 H 1.09004 * 109.46798 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46748 * 299.99921 * 3 2 1 34 34 H 1.08994 * 109.47293 * 59.99913 * 3 2 1 35 35 H 0.96998 * 120.00106 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47074 * 180.02562 * 12 2 1 37 37 H 1.09002 * 109.47742 * 59.99686 * 12 2 1 38 38 H 1.00904 * 111.00314 * 303.95530 * 13 12 2 39 39 H 1.09002 * 113.61294 * 254.54225 * 16 14 13 40 40 H 1.08994 * 113.61758 * 25.35746 * 16 14 13 41 41 H 1.08002 * 120.02562 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.96841 * 180.26947 * 22 21 20 43 43 H 1.08007 * 119.94417 * 179.70428 * 23 22 21 44 44 H 1.07998 * 119.97542 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.02909 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.46723 * 181.53198 * 27 26 14 47 47 H 1.08992 * 109.47046 * 61.52975 * 27 26 14 48 48 H 1.09000 * 109.46898 * 301.53142 * 27 26 14 49 49 H 1.09001 * 109.46944 * 298.46816 * 28 26 14 50 50 H 1.08996 * 109.47527 * 58.47108 * 28 26 14 51 51 H 1.08999 * 109.46987 * 178.47317 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.7032 -1.5511 -1.1326 6 6 1.6354 -0.2871 -2.4812 7 7 1.7799 -1.0802 -3.5203 8 14 0.8925 1.4128 -2.6998 9 1 1.9779 2.4037 -2.9126 10 1 -0.0128 1.4097 -3.8769 11 1 0.1219 1.7763 -1.4835 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4486 14 6 2.0218 -0.6946 3.6703 15 1 2.2681 -1.7446 3.5119 16 6 3.1137 0.0882 4.4186 17 6 2.4084 -0.3291 5.7230 18 1 2.7600 -1.2793 6.1249 19 8 2.3596 0.7067 6.7061 20 6 3.1997 0.5896 7.7679 21 6 4.1260 -0.4424 7.8105 22 6 4.9831 -0.5556 8.8880 23 6 4.9100 0.3512 9.9292 24 6 3.9840 1.3773 9.8918 25 6 3.1288 1.4985 8.8137 26 6 1.1201 -0.4508 4.8920 27 6 0.3176 0.8494 4.8115 28 6 0.2593 -1.6581 5.2690 29 1 -0.3633 0.6128 0.8250 30 1 -0.3633 0.4081 -0.9431 31 1 -0.3633 -1.0208 0.1182 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.5011 -0.7823 -4.4003 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2493 38 1 1.8199 0.9436 2.4402 39 1 4.1109 -0.3374 4.3059 40 1 3.0879 1.1615 4.2307 41 1 4.1800 -1.1539 6.9999 42 1 5.7073 -1.3562 8.9196 43 1 5.5778 0.2582 10.7730 44 1 3.9286 2.0841 10.7065 45 1 2.4054 2.2999 8.7851 46 1 -0.2743 0.9677 5.7192 47 1 -0.3456 0.8141 3.9473 48 1 1.0010 1.6926 4.7110 49 1 -0.4087 -1.9003 4.4425 50 1 0.9031 -2.5123 5.4782 51 1 -0.3299 -1.4217 6.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182261759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:52 Heat of formation + Delta-G solvation = 22.184510 kcal Electronic energy + Delta-G solvation = -27231.929746 eV Core-core repulsion = 23711.805113 eV Total energy + Delta-G solvation = -3520.124633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91820 -39.31798 -37.21446 -36.36310 -32.86706 -31.30083 -31.29534 -30.32888 -29.79003 -27.38653 -26.18944 -25.51492 -24.90511 -23.64479 -22.78359 -22.45241 -21.61251 -19.02452 -18.50145 -18.27519 -16.34442 -16.00802 -15.95454 -15.54653 -15.34400 -15.13518 -14.74389 -14.41563 -14.01988 -13.90784 -13.65243 -13.23342 -13.17470 -12.94373 -12.80127 -12.47262 -12.35622 -12.10755 -12.07214 -12.01962 -11.81104 -11.74020 -11.64591 -11.39490 -11.15073 -10.92175 -10.65241 -10.58288 -10.29564 -10.12327 -10.03625 -9.87826 -9.77778 -9.25440 -8.99921 -8.52148 -8.35923 -8.31110 -7.82788 -6.09297 -4.02763 1.09070 1.22579 3.07438 3.31717 3.41032 3.44426 3.55531 4.31672 4.40213 4.44639 4.52887 4.54515 4.64217 4.69528 4.85269 4.97781 5.12311 5.15366 5.24140 5.25695 5.34377 5.41084 5.46153 5.56999 5.74580 5.77396 5.78787 5.88867 5.98407 6.00930 6.04750 6.11093 6.13869 6.16680 6.20872 6.26666 6.28394 6.35872 6.50277 6.51283 6.59171 6.61179 6.77575 6.83982 6.93935 7.07587 7.33142 7.42098 7.51897 7.62262 7.83757 7.93001 8.55010 8.96902 9.58461 11.04141 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.002608 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.003601 B =10731.999533 C =10826.726825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.042 3.958 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.070 0.930 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.873 3.127 9 H -0.288 1.288 10 H -0.305 1.305 11 H -0.238 1.238 12 C 0.084 3.916 13 N -0.670 5.670 14 C 0.081 3.919 15 H 0.097 0.903 16 C -0.183 4.183 17 C 0.060 3.940 18 H 0.097 0.903 19 O -0.294 6.294 20 C 0.136 3.864 21 C -0.212 4.212 22 C -0.080 4.080 23 C -0.166 4.166 24 C -0.082 4.082 25 C -0.158 4.158 26 C -0.063 4.063 27 C -0.112 4.112 28 C -0.135 4.135 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.020 0.980 37 H 0.065 0.935 38 H 0.340 0.660 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.051 0.949 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 2.685 25.733 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.041 3.959 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.088 0.912 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.704 3.296 9 H -0.216 1.216 10 H -0.233 1.233 11 H -0.164 1.164 12 C -0.044 4.044 13 N -0.300 5.300 14 C -0.031 4.031 15 H 0.115 0.885 16 C -0.223 4.223 17 C 0.003 3.997 18 H 0.115 0.885 19 O -0.207 6.207 20 C 0.090 3.910 21 C -0.230 4.230 22 C -0.098 4.098 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.177 4.177 26 C -0.064 4.064 27 C -0.169 4.169 28 C -0.193 4.193 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.662 2.471 25.446 25.619 hybrid contribution 0.966 0.924 -0.369 1.387 sum 2.628 3.395 25.077 25.442 Atomic orbital electron populations 1.22132 0.97433 0.99873 0.99274 1.18455 0.92867 0.91456 0.93159 1.22352 1.00198 0.99200 0.98799 1.20834 1.29744 1.15932 0.88693 0.91205 1.24956 0.94718 0.96990 0.95997 1.70000 1.47841 1.35170 1.00070 0.87554 0.79321 0.85783 0.76908 1.21597 1.23301 1.16368 1.22001 0.96017 0.97851 0.88512 1.60458 1.62653 1.06203 1.00727 1.22782 0.92274 0.98307 0.89735 0.88459 1.24291 0.99632 1.02224 0.96104 1.24325 0.99385 0.90224 0.85777 0.88520 1.86190 1.57038 1.46849 1.30577 1.19129 0.89869 0.94220 0.87750 1.21324 0.99501 1.00774 1.01447 1.20958 0.97488 0.98315 0.93053 1.21037 1.00898 0.96852 0.99641 1.20961 0.94381 0.97529 0.97128 1.20475 1.02858 1.00936 0.93387 1.22277 0.93312 0.97350 0.93438 1.21275 0.99537 0.94447 1.01674 1.21729 0.99740 0.96176 1.01626 0.94764 0.93730 0.94054 0.93731 0.94094 0.94963 0.92782 0.96122 0.91665 0.83981 0.91165 0.88861 0.85382 0.85968 0.86128 0.85585 0.85344 0.93201 0.90846 0.92769 0.91303 0.93010 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 7.55 37.16 0.28 -2.54 16 2 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 3 C -0.15 -3.09 7.48 37.16 0.28 -2.81 16 4 C -0.51 -13.98 8.61 -34.44 -0.30 -14.27 16 5 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 6 C 0.08 2.14 5.29 -17.82 -0.09 2.05 16 7 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 8 Si 0.87 21.52 22.95 -169.99 -3.90 17.62 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 11 H -0.24 -5.42 4.47 56.52 0.25 -5.17 16 12 C 0.08 1.59 4.43 -3.83 -0.02 1.57 16 13 N -0.67 -10.29 4.92 -105.86 -0.52 -10.81 16 14 C 0.08 1.03 3.63 -66.90 -0.24 0.79 16 15 H 0.10 1.24 7.82 -51.93 -0.41 0.84 16 16 C -0.18 -2.14 7.19 -25.78 -0.19 -2.32 16 17 C 0.06 0.65 3.11 -25.78 -0.08 0.57 16 18 H 0.10 0.96 5.79 -51.93 -0.30 0.65 16 19 O -0.29 -3.54 9.27 -19.43 -0.18 -3.72 16 20 C 0.14 1.54 6.68 -39.21 -0.26 1.28 16 21 C -0.21 -2.15 9.02 -39.43 -0.36 -2.51 16 22 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 23 C -0.17 -1.38 10.04 -39.56 -0.40 -1.78 16 24 C -0.08 -0.70 10.04 -39.60 -0.40 -1.09 16 25 C -0.16 -1.60 9.99 -39.43 -0.39 -1.99 16 26 C -0.06 -0.72 1.34 -153.69 -0.21 -0.93 16 27 C -0.11 -1.35 7.77 37.16 0.29 -1.06 16 28 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 29 H 0.03 0.67 7.81 -51.93 -0.41 0.26 16 30 H 0.04 1.02 3.85 -51.93 -0.20 0.82 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.91 2.65 -51.93 -0.14 0.77 16 34 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.34 5.16 6.17 -39.29 -0.24 4.92 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.15 7.33 -51.93 -0.38 0.77 16 41 H 0.13 1.18 5.90 -52.49 -0.31 0.87 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 48 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.05 0.50 7.98 -51.93 -0.41 0.08 16 51 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -29.64 382.32 -8.99 -38.63 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.70 Total: 5.33 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -2.23 Total: -26.43 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.25 Total: -37.19 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.18 Total: -3.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.90 Total: 17.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.64 -8.99 -38.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182261759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.816 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds