Wall clock time and date at job start Tue Mar 31 2020 11:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 C 1.50701 * 109.46802 * 239.99877 * 2 1 3 5 5 H 1.08000 * 119.99675 * 236.16911 * 4 2 1 6 6 C 1.37877 * 119.99934 * 56.17897 * 4 2 1 7 7 N 1.31513 * 119.99707 * 197.30887 * 6 4 2 8 8 Si 1.86796 * 120.00261 * 17.30700 * 6 4 2 9 9 H 1.48501 * 109.47096 * 87.03884 * 8 6 4 10 10 H 1.48498 * 109.47337 * 207.04099 * 8 6 4 11 11 H 1.48507 * 109.47102 * 327.04423 * 8 6 4 12 12 C 1.52997 * 109.47007 * 120.00266 * 2 1 3 13 13 N 1.46898 * 109.47080 * 299.99651 * 12 2 1 14 14 C 1.46901 * 111.00333 * 180.02562 * 13 12 2 15 15 H 1.09006 * 112.84365 * 336.19572 * 14 13 12 16 16 C 1.53777 * 113.69332 * 107.46571 * 14 13 12 17 17 C 1.54048 * 87.08038 * 139.99117 * 16 14 13 18 18 H 1.09004 * 113.61555 * 89.06717 * 17 16 14 19 19 O 1.42890 * 113.69713 * 220.05388 * 17 16 14 20 20 C 1.35903 * 117.00106 * 254.39872 * 19 17 16 21 21 C 1.38739 * 120.05333 * 5.04722 * 20 19 17 22 22 C 1.38144 * 119.94110 * 179.69858 * 21 20 19 23 23 C 1.38261 * 120.05559 * 0.59297 * 22 21 20 24 24 C 1.38268 * 120.11646 * 359.67444 * 23 22 21 25 25 C 1.38146 * 120.05188 * 0.02926 * 24 23 22 26 26 C 1.53784 * 113.61663 * 205.00317 * 14 13 12 27 27 C 1.53003 * 113.61216 * 334.48021 * 26 14 13 28 28 C 1.53001 * 113.61395 * 105.30060 * 26 14 13 29 29 H 1.08999 * 109.47076 * 306.60307 * 1 2 3 30 30 H 1.08993 * 109.46978 * 66.59935 * 1 2 3 31 31 H 1.08999 * 109.47216 * 186.60301 * 1 2 3 32 32 H 1.09004 * 109.46798 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46748 * 299.99921 * 3 2 1 34 34 H 1.08994 * 109.47293 * 59.99913 * 3 2 1 35 35 H 0.96998 * 120.00106 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47074 * 180.02562 * 12 2 1 37 37 H 1.09002 * 109.47742 * 59.99686 * 12 2 1 38 38 H 1.00904 * 111.00314 * 303.95530 * 13 12 2 39 39 H 1.09002 * 113.61294 * 254.54225 * 16 14 13 40 40 H 1.08994 * 113.61758 * 25.35746 * 16 14 13 41 41 H 1.08002 * 120.02562 * 359.97438 * 21 20 19 42 42 H 1.08001 * 119.96841 * 180.26947 * 22 21 20 43 43 H 1.08007 * 119.94417 * 179.70428 * 23 22 21 44 44 H 1.07998 * 119.97542 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.02909 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.46723 * 181.53198 * 27 26 14 47 47 H 1.08992 * 109.47046 * 61.52975 * 27 26 14 48 48 H 1.09000 * 109.46898 * 301.53142 * 27 26 14 49 49 H 1.09001 * 109.46944 * 298.46816 * 28 26 14 50 50 H 1.08996 * 109.47527 * 58.47108 * 28 26 14 51 51 H 1.08999 * 109.46987 * 178.47317 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.7032 -1.5511 -1.1326 6 6 1.6354 -0.2871 -2.4812 7 7 1.7799 -1.0802 -3.5203 8 14 0.8925 1.4128 -2.6998 9 1 1.9779 2.4037 -2.9126 10 1 -0.0128 1.4097 -3.8769 11 1 0.1219 1.7763 -1.4835 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4486 14 6 2.0218 -0.6946 3.6703 15 1 2.2681 -1.7446 3.5119 16 6 3.1137 0.0882 4.4186 17 6 2.4084 -0.3291 5.7230 18 1 2.7600 -1.2793 6.1249 19 8 2.3596 0.7067 6.7061 20 6 3.1997 0.5896 7.7679 21 6 4.1260 -0.4424 7.8105 22 6 4.9831 -0.5556 8.8880 23 6 4.9100 0.3512 9.9292 24 6 3.9840 1.3773 9.8918 25 6 3.1288 1.4985 8.8137 26 6 1.1201 -0.4508 4.8920 27 6 0.3176 0.8494 4.8115 28 6 0.2593 -1.6581 5.2690 29 1 -0.3633 0.6128 0.8250 30 1 -0.3633 0.4081 -0.9431 31 1 -0.3633 -1.0208 0.1182 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.5011 -0.7823 -4.4003 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2493 38 1 1.8199 0.9436 2.4402 39 1 4.1109 -0.3374 4.3059 40 1 3.0879 1.1615 4.2307 41 1 4.1800 -1.1539 6.9999 42 1 5.7073 -1.3562 8.9196 43 1 5.5778 0.2582 10.7730 44 1 3.9286 2.0841 10.7065 45 1 2.4054 2.2999 8.7851 46 1 -0.2743 0.9677 5.7192 47 1 -0.3456 0.8141 3.9473 48 1 1.0010 1.6926 4.7110 49 1 -0.4087 -1.9003 4.4425 50 1 0.9031 -2.5123 5.4782 51 1 -0.3299 -1.4217 6.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182261759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:51 Heat of formation + Delta-G solvation = 5.851566 kcal Electronic energy + Delta-G solvation = -27232.637996 eV Core-core repulsion = 23711.805113 eV Total energy + Delta-G solvation = -3520.832883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79903 -40.15176 -38.56287 -37.47672 -34.56654 -33.02741 -31.98448 -31.23224 -30.57962 -28.31624 -27.89008 -27.08864 -26.62359 -24.78688 -23.54579 -23.37603 -22.45138 -20.66267 -19.43098 -19.27314 -18.00859 -17.30076 -17.00059 -16.70990 -16.37465 -16.23171 -15.67976 -15.47776 -15.18065 -14.99264 -14.76945 -14.64892 -14.33665 -14.20128 -14.11865 -13.94535 -13.65266 -13.59248 -13.16788 -13.00394 -12.96379 -12.78065 -12.59020 -12.42188 -12.30064 -12.10391 -12.06140 -11.91198 -11.87671 -11.55458 -11.51540 -11.22018 -10.98865 -10.93999 -10.51395 -10.23206 -9.92986 -9.15200 -9.05062 -8.29112 -6.25404 0.41567 0.52548 1.36119 1.39863 1.49081 2.26380 2.37347 2.86826 3.07561 3.36172 3.41153 3.52303 3.72098 3.86444 3.95934 4.03519 4.21989 4.30297 4.34563 4.35611 4.48444 4.52447 4.53421 4.57145 4.59233 4.63342 4.78467 4.84647 4.86781 4.91491 4.92591 4.99064 5.06400 5.09469 5.11498 5.15460 5.16792 5.19765 5.25642 5.35603 5.39196 5.47309 5.50544 5.59135 5.62859 5.65398 5.79413 5.91232 5.91956 6.25927 6.37221 6.54277 6.61525 6.81181 7.39021 8.88124 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026509 B = 0.002608 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.003601 B =10731.999533 C =10826.726825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.037 3.963 3 C -0.146 4.146 4 C -0.513 4.513 5 H 0.028 0.972 6 C 0.018 3.982 7 N -0.946 5.946 8 Si 0.929 3.071 9 H -0.286 1.286 10 H -0.314 1.314 11 H -0.202 1.202 12 C 0.100 3.900 13 N -0.664 5.664 14 C 0.076 3.924 15 H 0.097 0.903 16 C -0.179 4.179 17 C 0.068 3.932 18 H 0.109 0.891 19 O -0.306 6.306 20 C 0.111 3.889 21 C -0.224 4.224 22 C -0.087 4.087 23 C -0.168 4.168 24 C -0.084 4.084 25 C -0.173 4.173 26 C -0.060 4.060 27 C -0.107 4.107 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.262 0.738 36 H 0.013 0.987 37 H 0.052 0.948 38 H 0.343 0.657 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.132 0.868 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 4.157 28.833 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.035 3.965 3 C -0.203 4.203 4 C -0.551 4.551 5 H 0.047 0.953 6 C -0.179 4.179 7 N -0.586 5.586 8 Si 0.758 3.242 9 H -0.214 1.214 10 H -0.244 1.244 11 H -0.125 1.125 12 C -0.029 4.029 13 N -0.295 5.295 14 C -0.036 4.036 15 H 0.115 0.885 16 C -0.218 4.218 17 C 0.011 3.989 18 H 0.126 0.874 19 O -0.220 6.220 20 C 0.066 3.934 21 C -0.242 4.242 22 C -0.105 4.105 23 C -0.186 4.186 24 C -0.102 4.102 25 C -0.191 4.191 26 C -0.061 4.061 27 C -0.165 4.165 28 C -0.191 4.191 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.163 0.837 44 H 0.168 0.832 45 H 0.150 0.850 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.588 3.952 28.595 28.910 hybrid contribution 1.082 0.371 -1.215 1.669 sum 2.670 4.323 27.380 27.847 Atomic orbital electron populations 1.22048 0.96668 0.99936 0.99544 1.18453 0.93358 0.92408 0.92233 1.22268 1.00314 0.97853 0.99888 1.21196 1.28205 1.14752 0.90956 0.95330 1.25782 0.95779 1.00665 0.95715 1.70144 1.50402 1.37352 1.00688 0.86647 0.78842 0.80945 0.77738 1.21361 1.24361 1.12549 1.21642 0.95349 0.97079 0.88869 1.60378 1.62636 1.06214 1.00287 1.22846 0.93520 0.98268 0.88927 0.88464 1.24216 0.99556 1.01691 0.96326 1.24222 0.98509 0.90630 0.85502 0.87358 1.86153 1.57617 1.47195 1.31014 1.19385 0.90630 0.95350 0.88041 1.21480 0.99755 1.00765 1.02212 1.21285 0.97505 0.99005 0.92749 1.21411 1.00832 0.96221 1.00092 1.21304 0.93695 0.97968 0.97192 1.20710 1.03573 1.01076 0.93788 1.22238 0.93583 0.97555 0.92723 1.21217 0.99306 0.94485 1.01467 1.21714 0.99698 0.96152 1.01515 0.92036 0.94997 0.94857 0.93776 0.95159 0.91456 0.92938 0.96875 0.92971 0.83583 0.90689 0.89351 0.84954 0.84005 0.83717 0.83150 0.85027 0.92737 0.91757 0.93175 0.92202 0.91960 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 7.55 71.98 0.54 -4.64 16 2 C 0.04 1.58 0.57 -52.93 -0.03 1.55 16 3 C -0.15 -5.72 7.48 71.98 0.54 -5.18 16 4 C -0.51 -28.49 8.61 25.60 0.22 -28.27 16 5 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 6 C 0.02 1.03 5.29 84.65 0.45 1.47 16 7 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 8 Si 0.93 44.28 22.95 68.60 1.57 45.86 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 11 H -0.20 -8.44 4.47 99.48 0.44 -7.99 16 12 C 0.10 3.68 4.43 86.30 0.38 4.07 16 13 N -0.66 -19.21 4.92 -488.85 -2.41 -21.62 16 14 C 0.08 1.81 3.63 45.44 0.16 1.98 16 15 H 0.10 2.36 7.82 -2.38 -0.02 2.35 16 16 C -0.18 -3.89 7.19 31.21 0.22 -3.66 16 17 C 0.07 1.38 3.11 31.21 0.10 1.48 16 18 H 0.11 1.94 5.79 -2.38 -0.01 1.93 16 19 O -0.31 -6.98 9.27 -92.46 -0.86 -7.84 16 20 C 0.11 2.36 6.68 22.51 0.15 2.51 16 21 C -0.22 -4.18 9.02 22.37 0.20 -3.98 16 22 C -0.09 -1.35 10.04 22.25 0.22 -1.13 16 23 C -0.17 -2.32 10.04 22.28 0.22 -2.10 16 24 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 25 C -0.17 -3.24 9.99 22.37 0.22 -3.02 16 26 C -0.06 -1.28 1.34 -51.65 -0.07 -1.35 16 27 C -0.11 -2.40 7.77 71.98 0.56 -1.84 16 28 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 29 H 0.06 2.21 7.81 -2.39 -0.02 2.19 16 30 H 0.03 1.39 3.85 -2.39 -0.01 1.38 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.03 1.25 2.65 -2.38 -0.01 1.24 16 34 H 0.07 2.16 6.57 -2.39 -0.02 2.14 16 35 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 38 H 0.34 9.55 6.17 -89.69 -0.55 8.99 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 2.04 7.33 -2.39 -0.02 2.02 16 41 H 0.13 2.23 5.90 -2.91 -0.02 2.21 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.55 7.83 -2.39 -0.02 1.53 16 48 H 0.05 1.15 7.22 -2.39 -0.02 1.13 16 49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 1.07 7.98 -2.39 -0.02 1.05 16 51 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -65.37 382.32 3.69 -61.68 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.09 Total: 26.20 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 4.99 Total: -45.05 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.11 Total: -80.85 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.86 Total: -7.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.57 Total: 45.86 kcal Total: -65.37 3.69 -61.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182261759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.534 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds