Wall clock time and date at job start Tue Mar 31 2020 12:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47517 * 2 1 4 4 C 1.53003 * 109.46998 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46888 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46983 * 179.97438 * 5 4 3 7 7 C 1.38370 * 119.84775 * 270.31423 * 6 5 4 8 8 C 1.37943 * 120.15337 * 180.28036 * 7 6 5 9 9 C 1.39643 * 119.84188 * 359.42379 * 8 7 6 10 10 C 1.47725 * 120.14869 * 180.29570 * 9 8 7 11 11 O 1.21591 * 120.00188 * 323.91590 * 10 9 8 12 12 N 1.34780 * 119.99841 * 143.90780 * 10 9 8 13 13 C 1.36864 * 119.99900 * 186.51566 * 12 10 9 14 14 H 1.08002 * 120.00070 * 134.90168 * 13 12 10 15 15 C 1.39049 * 120.00220 * 314.89990 * 13 12 10 16 16 N 1.31364 * 120.00024 * 338.80190 * 15 13 12 17 17 Si 1.86805 * 120.00195 * 158.79995 * 15 13 12 18 18 H 1.48493 * 109.47174 * 90.00171 * 17 15 13 19 19 H 1.48501 * 109.47216 * 210.00287 * 17 15 13 20 20 H 1.48510 * 109.46825 * 330.00049 * 17 15 13 21 21 C 1.46499 * 119.99891 * 6.52299 * 12 10 9 22 22 C 1.52991 * 109.47393 * 103.25740 * 21 12 10 23 23 C 1.53004 * 109.47152 * 179.97438 * 22 21 12 24 24 C 1.53005 * 109.47301 * 179.97438 * 23 22 21 25 25 C 1.39642 * 119.70152 * 0.27983 * 9 8 7 26 26 C 1.37937 * 119.84714 * 359.97438 * 25 9 8 27 27 H 1.09001 * 109.47608 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46898 * 299.99739 * 1 2 3 29 29 H 1.09002 * 109.47240 * 59.99424 * 1 2 3 30 30 H 1.09009 * 109.46540 * 239.99944 * 2 1 3 31 31 H 1.09002 * 109.47240 * 120.00576 * 2 1 3 32 32 H 1.08995 * 109.47081 * 60.00206 * 3 2 1 33 33 H 1.09002 * 109.47335 * 300.00517 * 3 2 1 34 34 H 1.08995 * 109.47274 * 60.00033 * 4 3 2 35 35 H 1.08999 * 109.46910 * 299.99396 * 4 3 2 36 36 H 1.08997 * 109.47644 * 59.99189 * 5 4 3 37 37 H 1.09007 * 109.46487 * 299.99502 * 5 4 3 38 38 H 1.08001 * 119.92640 * 0.02562 * 7 6 5 39 39 H 1.07994 * 120.07471 * 179.69827 * 8 7 6 40 40 H 0.97001 * 119.99548 * 185.04571 * 16 15 13 41 41 H 1.09002 * 109.46706 * 223.25576 * 21 12 10 42 42 H 1.08994 * 109.47088 * 343.25163 * 21 12 10 43 43 H 1.09002 * 109.47061 * 299.99619 * 22 21 12 44 44 H 1.08994 * 109.47474 * 59.99660 * 22 21 12 45 45 H 1.09002 * 109.46829 * 299.99764 * 23 22 21 46 46 H 1.08994 * 109.47206 * 59.99499 * 23 22 21 47 47 H 1.08995 * 109.46849 * 300.00035 * 24 23 22 48 48 H 1.09005 * 109.46988 * 59.99256 * 24 23 22 49 49 H 1.08990 * 109.47271 * 179.97438 * 24 23 22 50 50 H 1.07999 * 120.08026 * 180.02562 * 25 9 8 51 51 H 1.08002 * 119.92516 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.5871 2.8847 0.0000 7 6 6.2758 2.8775 1.2001 8 6 7.6552 2.8832 1.2075 9 6 8.3566 2.8841 0.0000 10 6 9.8338 2.8835 0.0000 11 8 10.4420 3.5027 0.8516 12 7 10.5074 2.1965 -0.9438 13 6 11.8694 2.0851 -0.8678 14 1 12.3432 1.1292 -1.0359 15 6 12.6432 3.2024 -0.5740 16 7 12.1601 4.4073 -0.7753 17 14 14.3697 2.9902 0.1069 18 1 15.3395 2.9217 -1.0155 19 1 14.7031 4.1447 0.9794 20 1 14.4389 1.7354 0.8983 21 6 9.7818 1.5693 -2.0511 22 6 9.9532 2.4128 -3.3160 23 6 9.1958 1.7573 -4.4726 24 6 9.3667 2.6012 -5.7374 25 6 7.6552 2.8851 -1.2075 26 6 6.2759 2.8847 -1.2002 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9286 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 3.7172 3.3982 0.8903 37 1 3.7165 3.3991 -0.8897 38 1 5.7321 2.8716 2.1333 39 1 8.1914 2.8825 2.1450 40 1 12.7241 5.1848 -0.6403 41 1 10.1784 0.5690 -2.2250 42 1 8.7233 1.5019 -1.8000 43 1 9.5566 3.4131 -3.1421 44 1 11.0117 2.4802 -3.5671 45 1 9.5928 0.7571 -4.6463 46 1 8.1373 1.6895 -4.2217 47 1 8.9695 3.6011 -5.5634 48 1 10.4253 2.6694 -5.9884 49 1 8.8276 2.1340 -6.5615 50 1 8.1914 2.8853 -2.1449 51 1 5.7321 2.8850 -2.1334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189192368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:13 Heat of formation + Delta-G solvation = -40.112347 kcal Electronic energy + Delta-G solvation = -26796.235764 eV Core-core repulsion = 23273.409737 eV Total energy + Delta-G solvation = -3522.826027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.19968 -39.35216 -37.21568 -36.96166 -35.16577 -34.26689 -33.50131 -31.88285 -30.94402 -29.66778 -27.78265 -26.43500 -24.59928 -23.68057 -23.53672 -22.05272 -21.82175 -21.74137 -21.17652 -18.92787 -17.66195 -17.25722 -16.84809 -16.68738 -16.12140 -15.94683 -15.74378 -15.34971 -15.10845 -14.73067 -14.57943 -14.45640 -14.33385 -14.14915 -14.01347 -13.64751 -13.51592 -13.23986 -13.10057 -12.86074 -12.74722 -12.70951 -12.60496 -12.42642 -12.28294 -12.05948 -12.00723 -11.88157 -11.75632 -11.66787 -11.50644 -11.40641 -11.34953 -11.25450 -10.82308 -10.14987 -9.77360 -9.44431 -9.14679 -8.24188 -6.00417 0.17579 0.49832 1.33221 1.41495 1.48803 2.24673 2.40955 2.97363 3.10087 3.23412 3.78935 3.93200 4.04690 4.06831 4.13657 4.15751 4.17084 4.23930 4.35676 4.39278 4.43202 4.45427 4.58927 4.63547 4.65664 4.72628 4.77978 4.85836 4.89463 4.97898 4.99593 5.03268 5.05603 5.13428 5.13867 5.15524 5.17643 5.22849 5.31793 5.36424 5.44056 5.45218 5.45842 5.48535 5.50836 5.60129 5.61096 5.67706 5.73868 6.09369 6.19164 6.98761 7.17010 7.62470 8.29883 8.84447 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003096 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.099218 B = 9040.525426 C =10280.200267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.073 4.073 6 C -0.070 4.070 7 C -0.120 4.120 8 C -0.096 4.096 9 C -0.134 4.134 10 C 0.490 3.510 11 O -0.593 6.593 12 N -0.454 5.454 13 C -0.371 4.371 14 H 0.081 0.919 15 C 0.026 3.974 16 N -0.861 5.861 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.293 1.293 20 H -0.268 1.268 21 C 0.080 3.920 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.149 4.149 25 C -0.119 4.119 26 C -0.118 4.118 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.105 0.895 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.075 0.925 50 H 0.145 0.855 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.887 -7.131 -5.176 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.148 4.148 5 C -0.110 4.110 6 C -0.070 4.070 7 C -0.137 4.137 8 C -0.115 4.115 9 C -0.137 4.137 10 C 0.280 3.720 11 O -0.476 6.476 12 N -0.173 5.173 13 C -0.498 4.498 14 H 0.099 0.901 15 C -0.182 4.182 16 N -0.495 5.495 17 Si 0.794 3.206 18 H -0.185 1.185 19 H -0.220 1.220 20 H -0.192 1.192 21 C -0.042 4.042 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.206 4.206 25 C -0.138 4.138 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.165 0.835 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.162 0.838 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.537 -6.654 -4.706 23.028 hybrid contribution 1.800 0.391 0.639 1.950 sum -19.737 -6.264 -4.067 21.103 Atomic orbital electron populations 1.21778 0.95504 1.01757 1.01967 1.21552 0.96175 0.96985 1.01862 1.21595 0.94318 0.96840 1.02516 1.21557 0.95757 0.95322 1.02214 1.20656 0.88170 0.98120 1.04093 1.20329 0.97266 0.97156 0.92271 1.21146 0.92133 1.01094 0.99368 1.21166 0.95253 0.98811 0.96320 1.20284 0.92993 1.04541 0.95885 1.18823 0.87251 0.83428 0.82513 1.90547 1.70628 1.45222 1.41249 1.43387 1.05706 1.48353 1.19883 1.19222 0.81762 0.94953 1.53865 0.90103 1.26118 1.02500 0.94414 0.95135 1.69949 1.37735 0.98753 1.43089 0.85332 0.78878 0.77597 0.78780 1.18494 1.21956 1.19221 1.22378 0.98239 0.96451 0.87122 1.21769 1.00326 0.98305 0.95018 1.21485 1.00589 0.99448 0.93678 1.21744 1.01434 0.99903 0.97513 1.22046 0.95694 0.98535 0.97494 1.21277 0.92513 1.00587 0.99221 0.92677 0.92656 0.92486 0.92170 0.92460 0.91682 0.91351 0.91924 0.92506 0.90055 0.89513 0.83539 0.87642 0.93134 0.92057 0.88022 0.94161 0.93965 0.91084 0.90305 0.93291 0.93801 0.90640 0.83802 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.89 16 2 C -0.13 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.12 -1.37 5.21 30.59 0.16 -1.21 16 4 C -0.11 -1.64 5.20 30.60 0.16 -1.48 16 5 C -0.07 -1.19 5.34 29.85 0.16 -1.03 16 6 C -0.07 -1.71 5.14 -19.80 -0.10 -1.81 16 7 C -0.12 -3.43 9.68 22.23 0.22 -3.22 16 8 C -0.10 -3.75 9.62 22.54 0.22 -3.53 16 9 C -0.13 -5.91 5.45 -20.09 -0.11 -6.02 16 10 C 0.49 27.44 6.83 86.75 0.59 28.03 16 11 O -0.59 -38.93 14.46 -4.00 -0.06 -38.99 16 12 N -0.45 -24.22 2.53 -638.97 -1.62 -25.83 16 13 C -0.37 -21.47 9.04 84.10 0.76 -20.71 16 14 H 0.08 4.48 7.92 -2.91 -0.02 4.46 16 15 C 0.03 1.53 4.29 84.96 0.36 1.90 16 16 N -0.86 -54.44 11.83 21.68 0.26 -54.19 16 17 Si 0.97 47.25 29.61 68.60 2.03 49.28 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.08 3.27 4.86 86.38 0.42 3.69 16 22 C -0.12 -4.33 4.51 30.59 0.14 -4.20 16 23 C -0.11 -2.95 5.92 30.60 0.18 -2.77 16 24 C -0.15 -3.49 9.91 71.98 0.71 -2.78 16 25 C -0.12 -4.23 7.38 22.54 0.17 -4.07 16 26 C -0.12 -3.13 9.68 22.23 0.22 -2.91 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 37 H 0.09 1.18 8.08 -2.38 -0.02 1.16 16 38 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.11 4.38 8.02 -2.91 -0.02 4.36 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.10 3.68 4.02 -2.39 -0.01 3.67 16 43 H 0.04 1.66 6.98 -2.39 -0.02 1.64 16 44 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.14 5.08 3.38 -2.91 -0.01 5.07 16 51 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -77.39 404.74 6.63 -70.76 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.87 Total: 23.33 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 5.14 Total: -24.37 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.36 Total: -80.02 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.06 Total: -38.99 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -77.39 6.63 -70.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189192368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds