Wall clock time and date at job start Tue Mar 31 2020 11:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99758 * 2 1 4 4 H 1.48498 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47198 * 300.00211 * 3 2 1 6 6 H 1.48500 * 109.47111 * 60.00088 * 3 2 1 7 7 C 1.37874 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00090 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47198 * 174.41484 * 9 7 2 11 11 C 1.46911 * 110.99690 * 66.31611 * 10 9 7 12 12 C 1.50704 * 109.46804 * 71.49381 * 11 10 9 13 13 C 1.38163 * 120.02745 * 259.71856 * 12 11 10 14 14 C 1.38241 * 120.05506 * 179.77328 * 13 12 11 15 15 C 1.38282 * 120.11060 * 0.51360 * 14 13 12 16 16 C 1.38125 * 120.05722 * 359.74271 * 15 14 13 17 17 C 1.38714 * 120.02611 * 80.00451 * 12 11 10 18 18 O 1.35900 * 120.05747 * 359.97438 * 17 12 11 19 19 C 1.46894 * 111.00413 * 302.35823 * 10 9 7 20 20 C 1.52989 * 109.46848 * 178.07509 * 19 10 9 21 21 C 1.52997 * 109.47361 * 164.02134 * 20 19 10 22 22 C 1.53018 * 109.46144 * 75.94862 * 21 20 19 23 23 C 1.52985 * 109.45658 * 284.05128 * 22 21 20 24 24 C 1.52985 * 109.50573 * 315.99577 * 23 22 21 25 25 C 1.53005 * 109.48172 * 112.93772 * 24 23 22 26 26 C 1.52981 * 109.46804 * 298.10441 * 19 10 9 27 27 H 0.96993 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46867 * 54.41792 * 9 7 2 29 29 H 1.09002 * 109.46929 * 294.42177 * 9 7 2 30 30 H 1.09000 * 109.46727 * 191.49135 * 11 10 9 31 31 H 1.08997 * 109.46699 * 311.49558 * 11 10 9 32 32 H 1.08007 * 119.96906 * 0.02708 * 13 12 11 33 33 H 1.08001 * 119.94389 * 180.25211 * 14 13 12 34 34 H 1.08004 * 119.97373 * 179.77075 * 15 14 13 35 35 H 1.07997 * 120.02575 * 180.02562 * 16 15 14 36 36 H 0.96699 * 113.99909 * 90.00019 * 18 17 12 37 37 H 1.09005 * 109.46245 * 58.09031 * 19 10 9 38 38 H 1.09000 * 109.47319 * 284.02051 * 20 19 10 39 39 H 1.09005 * 109.47240 * 44.01896 * 20 19 10 40 40 H 1.09003 * 109.47138 * 315.95219 * 21 20 19 41 41 H 1.08996 * 109.47469 * 195.94817 * 21 20 19 42 42 H 1.09002 * 109.47086 * 164.05796 * 22 21 20 43 43 H 1.08996 * 109.47483 * 44.04930 * 22 21 20 44 44 H 1.09002 * 109.46768 * 195.98518 * 23 22 21 45 45 H 1.09004 * 109.46205 * 76.00425 * 23 22 21 46 46 H 1.09000 * 109.46489 * 352.93877 * 24 23 22 47 47 H 1.08998 * 109.47284 * 232.94650 * 24 23 22 48 48 H 1.08997 * 109.47737 * 164.05741 * 25 24 23 49 49 H 1.09000 * 109.47672 * 44.03324 * 25 24 23 50 50 H 1.08998 * 109.46509 * 247.06437 * 26 19 10 51 51 H 1.09000 * 109.47154 * 7.06065 * 26 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2002 -3.6124 -0.1336 11 6 3.0636 -3.7136 1.0506 12 6 2.2578 -4.2232 2.2177 13 6 1.7879 -3.3407 3.1713 14 6 1.0446 -3.8069 4.2396 15 6 0.7785 -5.1583 4.3624 16 6 1.2504 -6.0453 3.4145 17 6 1.9922 -5.5793 2.3385 18 8 2.4577 -6.4499 1.4047 19 6 3.0000 -3.4777 -1.3584 20 6 4.0071 -4.6266 -1.4386 21 6 4.5552 -4.7258 -2.8635 22 6 5.5709 -3.6056 -3.0982 23 6 4.8316 -2.2819 -3.3025 24 6 3.6404 -2.5012 -4.2370 25 6 2.3380 -2.2992 -3.4597 26 6 2.0769 -3.5218 -2.5775 27 1 -0.4850 0.8400 0.0004 28 1 0.5520 -2.5150 -0.8355 29 1 0.7012 -2.6012 0.9361 30 1 3.8822 -4.4035 0.8454 31 1 3.4684 -2.7304 1.2902 32 1 1.9980 -2.2853 3.0798 33 1 0.6748 -3.1150 4.9818 34 1 0.2007 -5.5206 5.1999 35 1 1.0419 -7.1006 3.5107 36 1 3.3351 -6.8057 1.6014 37 1 3.5337 -2.5274 -1.3410 38 1 4.8276 -4.4395 -0.7459 39 1 3.5136 -5.5616 -1.1732 40 1 3.7358 -4.6283 -3.5757 41 1 5.0417 -5.6917 -2.9993 42 1 6.1629 -3.8318 -3.9850 43 1 6.2289 -3.5245 -2.2330 44 1 5.5097 -1.5514 -3.7437 45 1 4.4756 -1.9126 -2.3407 46 1 3.6725 -3.5155 -4.6347 47 1 3.6873 -1.7871 -5.0592 48 1 1.5125 -2.1735 -4.1602 49 1 2.4224 -1.4108 -2.8339 50 1 2.2719 -4.4298 -3.1481 51 1 1.0382 -3.5163 -2.2472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203556952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:53 Heat of formation + Delta-G solvation = -31.423265 kcal Electronic energy + Delta-G solvation = -28928.453631 eV Core-core repulsion = 25406.004391 eV Total energy + Delta-G solvation = -3522.449241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08532 -40.25513 -37.55450 -37.25732 -34.66420 -33.72889 -33.12767 -31.53283 -30.62580 -28.89101 -27.19971 -26.64999 -25.74092 -23.56491 -23.35432 -22.67614 -21.81525 -20.54711 -20.22804 -19.06433 -18.22239 -17.34551 -16.92373 -16.77055 -16.42678 -16.07216 -15.97100 -15.34652 -15.03799 -14.92073 -14.84575 -14.56533 -14.51669 -14.18826 -13.79522 -13.45376 -13.24270 -13.14660 -12.94739 -12.84747 -12.81946 -12.69939 -12.51832 -12.31922 -12.07332 -11.87598 -11.84160 -11.67765 -11.60169 -11.45021 -11.35134 -11.09487 -10.96315 -10.78006 -10.60691 -10.52416 -9.66474 -9.35161 -8.76783 -8.06345 -6.25140 0.46320 0.51153 1.30513 1.33568 1.42765 2.36836 2.81193 3.15644 3.47008 3.58194 3.84100 4.01754 4.06146 4.09412 4.15371 4.27164 4.35686 4.38644 4.40330 4.45154 4.49757 4.52976 4.61948 4.75982 4.79854 4.88346 4.94379 5.02763 5.05787 5.10112 5.15906 5.18426 5.19645 5.24330 5.25658 5.30415 5.38474 5.39793 5.43455 5.53785 5.55292 5.58818 5.63288 5.65877 5.76261 5.78309 5.79911 5.90216 6.07377 6.17902 6.42159 6.76568 6.98170 7.05348 7.44054 8.92995 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.006412 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.316611 B = 4365.554636 C = 6509.235127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.018 3.982 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.208 3.792 10 N -0.526 5.526 11 C 0.106 3.894 12 C -0.108 4.108 13 C -0.109 4.109 14 C -0.141 4.141 15 C -0.108 4.108 16 C -0.156 4.156 17 C 0.117 3.883 18 O -0.494 6.494 19 C 0.089 3.911 20 C -0.104 4.104 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.103 4.103 27 H 0.260 0.740 28 H 0.003 0.997 29 H -0.003 1.003 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.399 0.601 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.038 0.962 50 H 0.082 0.918 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 -12.199 0.290 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.081 3.919 10 N -0.249 5.249 11 C -0.021 4.021 12 C -0.109 4.109 13 C -0.128 4.128 14 C -0.159 4.159 15 C -0.126 4.126 16 C -0.175 4.175 17 C 0.072 3.928 18 O -0.305 6.305 19 C -0.019 4.019 20 C -0.142 4.142 21 C -0.169 4.169 22 C -0.147 4.147 23 C -0.171 4.171 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.015 0.985 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.119 0.881 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.256 0.744 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.100 0.900 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.686 -12.415 -0.043 15.151 hybrid contribution 0.638 2.435 0.477 2.562 sum 9.323 -9.980 0.434 13.664 Atomic orbital electron populations 1.70076 1.07326 1.27126 1.51944 1.25604 0.95300 1.01910 0.95234 0.85815 0.79308 0.80882 0.77608 1.19196 1.20742 1.20757 1.21797 0.92705 0.92629 1.49507 0.93193 1.19297 0.91469 0.86546 0.94565 1.62553 1.17442 1.43628 1.01291 1.20737 0.94267 0.98144 0.88977 1.20307 1.00644 0.93770 0.96168 1.21095 0.98029 0.98855 0.94826 1.21333 0.99330 0.96861 0.98419 1.21282 0.99386 0.92390 0.99501 1.21628 1.00534 1.01425 0.93875 1.18328 0.97692 0.87712 0.89055 1.84849 1.38822 1.60676 1.46166 1.21804 0.93212 0.97675 0.89162 1.21693 0.97007 0.98082 0.97406 1.22032 0.99561 0.98714 0.96584 1.21569 0.97416 0.94041 1.01644 1.21876 0.97234 0.98334 0.99661 1.21734 0.93250 1.02604 0.97442 1.21615 0.97820 0.97995 0.97938 1.21682 0.98560 0.98019 0.95745 0.93069 0.97922 0.98484 0.89446 0.96318 0.88132 0.84821 0.82885 0.83442 0.74372 0.94064 0.92774 0.91424 0.89790 0.90591 0.90654 0.92568 0.92197 0.93294 0.89520 0.92195 0.93258 0.94321 0.89975 0.94844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.60 13.29 21.45 0.28 -55.32 16 2 C 0.02 1.04 5.46 84.65 0.46 1.50 16 3 Si 0.94 44.54 29.54 68.60 2.03 46.56 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 7 C -0.53 -28.85 7.28 25.60 0.19 -28.67 16 8 H 0.05 2.74 5.94 -2.91 -0.02 2.72 16 9 C 0.21 11.05 4.66 85.56 0.40 11.45 16 10 N -0.53 -22.73 4.48 -880.11 -3.94 -26.67 16 11 C 0.11 4.16 4.44 85.56 0.38 4.54 16 12 C -0.11 -4.02 4.79 -19.77 -0.09 -4.12 16 13 C -0.11 -4.16 8.67 22.25 0.19 -3.97 16 14 C -0.14 -4.43 10.04 22.28 0.22 -4.20 16 15 C -0.11 -2.84 10.04 22.25 0.22 -2.61 16 16 C -0.16 -4.26 9.99 22.37 0.22 -4.03 16 17 C 0.12 3.74 6.68 22.51 0.15 3.89 16 18 O -0.49 -13.87 12.74 -92.42 -1.18 -15.05 16 19 C 0.09 3.36 1.21 44.91 0.05 3.42 16 20 C -0.10 -3.04 4.03 30.59 0.12 -2.91 16 21 C -0.13 -3.10 5.33 30.60 0.16 -2.93 16 22 C -0.11 -2.51 5.71 30.60 0.17 -2.34 16 23 C -0.13 -3.76 5.48 30.58 0.17 -3.59 16 24 C -0.11 -3.15 5.47 30.59 0.17 -2.98 16 25 C -0.12 -4.19 5.59 30.60 0.17 -4.02 16 26 C -0.10 -3.84 4.81 30.59 0.15 -3.69 16 27 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.00 0.16 6.31 -2.39 -0.02 0.15 16 29 H 0.00 -0.17 6.54 -2.39 -0.02 -0.19 16 30 H 0.09 2.92 5.50 -2.39 -0.01 2.91 16 31 H 0.02 0.82 6.40 -2.39 -0.02 0.81 16 32 H 0.10 4.28 8.03 -2.91 -0.02 4.26 16 33 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 36 H 0.40 6.95 9.06 -74.06 -0.67 6.28 16 37 H 0.04 1.77 2.92 -2.38 -0.01 1.76 16 38 H 0.05 1.52 6.66 -2.39 -0.02 1.51 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.08 2.04 2.83 -2.39 -0.01 2.04 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.30 7.82 -2.39 -0.02 1.28 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.73 4.69 -2.38 -0.01 1.72 16 46 H 0.09 2.07 5.47 -2.39 -0.01 2.06 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.04 1.70 7.35 -2.39 -0.02 1.68 16 50 H 0.08 2.61 5.47 -2.39 -0.01 2.59 16 51 H 0.03 1.48 6.08 -2.39 -0.01 1.47 16 Total: -1.00 -66.95 369.44 0.98 -65.97 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.27 Total: 29.77 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.51 Total: -45.27 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.66 Total: -81.99 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.18 Total: -15.05 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.95 0.98 -65.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203556952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.546 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds