Wall clock time and date at job start Tue Mar 31 2020 11:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00380 * 2 1 4 4 C 1.38752 * 120.05404 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94415 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05632 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94623 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46980 * 116.02595 * 7 6 5 9 9 C 1.46898 * 111.00193 * 158.29984 * 8 7 6 10 10 C 1.50694 * 109.47209 * 202.68347 * 9 8 7 11 11 H 1.08000 * 120.00025 * 5.55689 * 10 9 8 12 12 C 1.37877 * 119.99960 * 185.56586 * 10 9 8 13 13 N 1.31520 * 120.00112 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00196 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47227 * 90.00036 * 14 12 10 16 16 H 1.48498 * 109.47292 * 210.00678 * 14 12 10 17 17 H 1.48509 * 109.46916 * 330.00223 * 14 12 10 18 18 C 1.46903 * 110.99844 * 282.25383 * 8 7 6 19 19 C 1.55236 * 110.57918 * 180.66304 * 18 8 7 20 20 C 1.54883 * 102.59022 * 203.33614 * 19 18 8 21 21 C 1.54265 * 104.31121 * 37.93189 * 20 19 18 22 22 C 1.53875 * 106.60118 * 336.32617 * 21 20 19 23 23 C 1.38250 * 120.10830 * 0.25815 * 6 5 4 24 24 C 1.50705 * 119.96984 * 179.72317 * 23 6 5 25 25 C 1.38167 * 120.05576 * 359.44966 * 23 6 5 26 26 C 1.50693 * 120.02741 * 180.25094 * 25 23 6 27 27 H 1.08999 * 109.47762 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47020 * 300.00200 * 1 2 3 29 29 H 1.09005 * 109.46713 * 59.99465 * 1 2 3 30 30 H 1.07997 * 120.02922 * 359.95098 * 4 3 2 31 31 H 1.08004 * 119.97353 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46994 * 356.03400 * 7 6 5 33 33 H 1.08997 * 109.47745 * 236.02517 * 7 6 5 34 34 H 1.09006 * 109.46950 * 322.67899 * 9 8 7 35 35 H 1.08994 * 109.47192 * 82.67464 * 9 8 7 36 36 H 0.96998 * 119.99912 * 179.97438 * 13 12 10 37 37 H 1.08995 * 110.43486 * 303.24574 * 18 8 7 38 38 H 1.09009 * 110.89631 * 85.04554 * 19 18 8 39 39 H 1.08995 * 110.77003 * 321.57134 * 19 18 8 40 40 H 1.09002 * 110.48995 * 279.18815 * 20 19 18 41 41 H 1.08998 * 110.48688 * 156.67533 * 20 19 18 42 42 H 1.09012 * 110.03320 * 95.60929 * 21 20 19 43 43 H 1.09002 * 110.03853 * 216.99097 * 21 20 19 44 44 H 1.09002 * 110.03593 * 119.27878 * 22 21 20 45 45 H 1.08997 * 110.02951 * 240.66651 * 22 21 20 46 46 H 1.09006 * 109.46991 * 94.88824 * 24 23 6 47 47 H 1.08998 * 109.47072 * 214.89138 * 24 23 6 48 48 H 1.08993 * 109.46949 * 334.89060 * 24 23 6 49 49 H 1.09000 * 109.47527 * 270.31935 * 26 25 23 50 50 H 1.09003 * 109.47248 * 30.31955 * 26 25 23 51 51 H 1.09001 * 109.47519 * 150.31572 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0005 7 6 3.9863 5.0183 0.0005 8 7 4.7506 5.1784 1.2449 9 6 5.8097 6.1840 1.0866 10 6 6.8867 5.9451 2.1131 11 1 6.8392 5.0768 2.7536 12 6 7.9327 6.8351 2.2348 13 7 8.8725 6.6269 3.1310 14 14 8.0152 8.3366 1.1267 15 1 7.3034 9.4684 1.7729 16 1 9.4352 8.7085 0.9018 17 1 7.3725 8.0266 -0.1757 18 6 3.8651 5.5186 2.3665 19 6 4.6842 5.7018 3.6724 20 6 3.6267 5.4414 4.7736 21 6 2.7612 4.2965 4.2081 22 6 2.9128 4.3455 2.6776 23 6 4.0561 2.5169 -0.0059 24 6 5.5609 2.5979 -0.0128 25 6 3.4312 1.2846 -0.0004 26 6 4.2537 0.0220 -0.0017 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2129 2.3203 0.0002 31 1 1.3342 4.5114 0.0019 32 1 3.2378 5.8076 -0.0701 33 1 4.6626 5.0816 -0.8519 34 1 6.2372 6.1071 0.0868 35 1 5.3890 7.1798 1.2262 36 1 9.6085 7.2528 3.2163 37 1 3.2974 6.4218 2.1428 38 1 5.0769 6.7160 3.7460 39 1 5.4896 4.9695 3.7293 40 1 3.0205 6.3321 4.9387 41 1 4.1095 5.1325 5.7007 42 1 3.1154 3.3380 4.5879 43 1 1.7176 4.4451 4.4856 44 1 3.3406 3.4110 2.3146 45 1 1.9425 4.5176 2.2117 46 1 5.9333 2.5274 1.0093 47 1 5.9663 1.7772 -0.6046 48 1 5.8716 3.5477 -0.4479 49 1 4.4519 -0.2815 -1.0297 50 1 5.1978 0.2028 0.5122 51 1 3.7064 -0.7688 0.5115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203720079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:04 Heat of formation + Delta-G solvation = -15.117414 kcal Electronic energy + Delta-G solvation = -28526.139472 eV Core-core repulsion = 25004.397306 eV Total energy + Delta-G solvation = -3521.742166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.36389 -38.70872 -37.29949 -34.82907 -33.28892 -32.56526 -31.28522 -28.85679 -27.79707 -27.42262 -27.38179 -26.51754 -25.74249 -23.77845 -21.12942 -20.67113 -20.24405 -19.75669 -19.10036 -17.48646 -16.75498 -16.47049 -15.77732 -15.42297 -15.01920 -14.73404 -14.23014 -14.05492 -14.00456 -13.63695 -13.50657 -13.04640 -12.90041 -12.65762 -12.64487 -12.40568 -12.20832 -12.12236 -11.91983 -11.88411 -11.57328 -11.30418 -11.18951 -11.04670 -10.87112 -10.69724 -10.45938 -10.42938 -10.28492 -10.12983 -10.06921 -9.97928 -9.83955 -9.67965 -8.93683 -8.51056 -8.27442 -7.72140 -7.34599 -6.00385 -3.94769 1.57513 1.67085 3.28614 3.32496 3.37279 3.38707 3.91776 4.44639 4.75779 4.88926 4.97849 5.03729 5.08006 5.18451 5.23896 5.29585 5.32527 5.36532 5.46730 5.49622 5.56391 5.66534 5.74051 5.85285 5.89300 5.99141 6.03314 6.09280 6.11629 6.14613 6.21774 6.23867 6.33960 6.40793 6.42314 6.47421 6.52837 6.56403 6.60867 6.66645 6.76009 6.79767 6.86230 6.98474 7.07270 7.08774 7.19668 7.38893 7.53326 7.70748 7.96494 8.13969 8.71104 9.11493 9.61698 11.11875 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.004255 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.340688 B = 6579.264369 C = 7246.888796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.117 3.883 4 C -0.215 4.215 5 C -0.080 4.080 6 C -0.093 4.093 7 C 0.092 3.908 8 N -0.511 5.511 9 C 0.161 3.839 10 C -0.495 4.495 11 H 0.090 0.910 12 C 0.067 3.933 13 N -0.900 5.900 14 Si 0.868 3.132 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.270 1.270 18 C 0.092 3.908 19 C -0.096 4.096 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.016 4.016 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.102 4.102 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.023 0.977 35 H -0.015 1.015 36 H 0.262 0.738 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -9.499 -5.463 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.094 4.094 7 C -0.036 4.036 8 N -0.234 5.234 9 C 0.035 3.965 10 C -0.533 4.533 11 H 0.108 0.892 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.696 3.304 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.195 1.195 18 C -0.016 4.016 19 C -0.133 4.133 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.017 4.017 24 C -0.161 4.161 25 C -0.124 4.124 26 C -0.159 4.159 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.003 0.997 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.349 -10.049 -5.296 19.095 hybrid contribution -0.780 1.997 -0.713 2.259 sum -16.129 -8.052 -6.009 19.003 Atomic orbital electron populations 1.22964 0.79143 1.03321 1.01105 1.86026 1.20672 1.27337 1.89164 1.18723 0.91713 0.83785 0.98496 1.20977 0.99221 0.92333 1.10890 1.20714 0.93987 0.96551 0.98624 1.19652 0.92595 0.95205 1.01903 1.21001 0.96088 0.92042 0.94502 1.62102 1.11246 1.48666 1.01408 1.20241 0.90117 0.88271 0.97861 1.21149 1.04289 1.10165 1.17740 0.89222 1.24869 0.95740 0.97532 0.95199 1.69880 1.12394 1.37197 1.34525 0.86987 0.77212 0.84270 0.81979 1.20598 1.21392 1.19462 1.22431 0.92508 0.94401 0.92303 1.22733 0.96549 1.03512 0.90511 1.22451 0.97945 0.97394 0.99200 1.22088 0.98628 0.98849 0.96218 1.22415 0.97921 1.00113 0.94764 1.19481 0.96663 0.90446 0.95092 1.20764 0.89804 1.02189 1.03349 1.19055 0.90244 0.95748 1.07373 1.20576 0.99207 0.94383 1.01713 0.88734 0.92929 0.93032 0.86294 0.86624 0.95215 0.90498 0.95943 0.99705 0.92843 0.95601 0.91326 0.88733 0.92991 0.92331 0.92490 0.93285 0.90447 0.93270 0.89702 0.92926 0.90581 0.91972 0.91272 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.01 9.54 -19.40 -0.19 -4.19 16 3 C 0.12 1.63 6.66 -39.22 -0.26 1.37 16 4 C -0.22 -2.78 9.04 -39.43 -0.36 -3.14 16 5 C -0.08 -1.10 7.36 -39.60 -0.29 -1.39 16 6 C -0.09 -1.42 3.16 -104.60 -0.33 -1.75 16 7 C 0.09 1.53 4.30 -4.97 -0.02 1.51 16 8 N -0.51 -9.89 3.39 -227.31 -0.77 -10.66 16 9 C 0.16 3.66 3.70 -4.98 -0.02 3.64 16 10 C -0.50 -12.99 7.48 -34.44 -0.26 -13.24 16 11 H 0.09 2.56 6.01 -52.49 -0.32 2.24 16 12 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 13 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 14 Si 0.87 20.98 27.36 -169.99 -4.65 16.33 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.29 6.71 56.52 0.38 -5.91 16 18 C 0.09 1.71 2.41 -65.86 -0.16 1.55 16 19 C -0.10 -1.90 4.53 -24.55 -0.11 -2.01 16 20 C -0.13 -2.17 6.82 -25.08 -0.17 -2.34 16 21 C -0.12 -1.83 6.80 -25.61 -0.17 -2.00 16 22 C -0.11 -1.86 4.53 -25.61 -0.12 -1.98 16 23 C -0.02 -0.25 5.24 -104.64 -0.55 -0.80 16 24 C -0.10 -1.65 8.12 36.01 0.29 -1.36 16 25 C -0.12 -1.80 5.89 -104.48 -0.62 -2.42 16 26 C -0.10 -1.30 8.99 36.00 0.32 -0.97 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 31 H 0.12 1.43 7.93 -52.48 -0.42 1.01 16 32 H 0.03 0.48 7.63 -51.93 -0.40 0.08 16 33 H 0.08 1.28 6.65 -51.93 -0.35 0.94 16 34 H 0.02 0.52 6.95 -51.93 -0.36 0.16 16 35 H -0.01 -0.35 7.07 -51.93 -0.37 -0.71 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.03 0.49 8.04 -51.93 -0.42 0.07 16 38 H 0.07 1.51 7.64 -51.92 -0.40 1.12 16 39 H 0.09 2.15 5.87 -51.93 -0.30 1.84 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.37 6.04 -51.93 -0.31 1.06 16 45 H 0.05 0.75 6.52 -51.93 -0.34 0.41 16 46 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.05 0.72 7.00 -51.93 -0.36 0.36 16 48 H 0.08 1.29 6.22 -51.93 -0.32 0.97 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 0.86 6.82 -51.93 -0.35 0.50 16 51 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -28.64 376.33 -9.73 -38.37 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.65 Total: 2.60 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -1.92 Total: -22.33 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.00 Total: -36.45 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.19 Total: -4.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.65 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.64 -9.73 -38.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203720079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.251 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds