Wall clock time and date at job start Tue Mar 31 2020 11:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00380 * 2 1 4 4 C 1.38752 * 120.05404 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94415 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05632 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94623 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46980 * 116.02595 * 7 6 5 9 9 C 1.46898 * 111.00193 * 158.29984 * 8 7 6 10 10 C 1.50694 * 109.47209 * 202.68347 * 9 8 7 11 11 H 1.08000 * 120.00025 * 5.55689 * 10 9 8 12 12 C 1.37877 * 119.99960 * 185.56586 * 10 9 8 13 13 N 1.31520 * 120.00112 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00196 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47227 * 90.00036 * 14 12 10 16 16 H 1.48498 * 109.47292 * 210.00678 * 14 12 10 17 17 H 1.48509 * 109.46916 * 330.00223 * 14 12 10 18 18 C 1.46903 * 110.99844 * 282.25383 * 8 7 6 19 19 C 1.55236 * 110.57918 * 180.66304 * 18 8 7 20 20 C 1.54883 * 102.59022 * 203.33614 * 19 18 8 21 21 C 1.54265 * 104.31121 * 37.93189 * 20 19 18 22 22 C 1.53875 * 106.60118 * 336.32617 * 21 20 19 23 23 C 1.38250 * 120.10830 * 0.25815 * 6 5 4 24 24 C 1.50705 * 119.96984 * 179.72317 * 23 6 5 25 25 C 1.38167 * 120.05576 * 359.44966 * 23 6 5 26 26 C 1.50693 * 120.02741 * 180.25094 * 25 23 6 27 27 H 1.08999 * 109.47762 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47020 * 300.00200 * 1 2 3 29 29 H 1.09005 * 109.46713 * 59.99465 * 1 2 3 30 30 H 1.07997 * 120.02922 * 359.95098 * 4 3 2 31 31 H 1.08004 * 119.97353 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46994 * 356.03400 * 7 6 5 33 33 H 1.08997 * 109.47745 * 236.02517 * 7 6 5 34 34 H 1.09006 * 109.46950 * 322.67899 * 9 8 7 35 35 H 1.08994 * 109.47192 * 82.67464 * 9 8 7 36 36 H 0.96998 * 119.99912 * 179.97438 * 13 12 10 37 37 H 1.08995 * 110.43486 * 303.24574 * 18 8 7 38 38 H 1.09009 * 110.89631 * 85.04554 * 19 18 8 39 39 H 1.08995 * 110.77003 * 321.57134 * 19 18 8 40 40 H 1.09002 * 110.48995 * 279.18815 * 20 19 18 41 41 H 1.08998 * 110.48688 * 156.67533 * 20 19 18 42 42 H 1.09012 * 110.03320 * 95.60929 * 21 20 19 43 43 H 1.09002 * 110.03853 * 216.99097 * 21 20 19 44 44 H 1.09002 * 110.03593 * 119.27878 * 22 21 20 45 45 H 1.08997 * 110.02951 * 240.66651 * 22 21 20 46 46 H 1.09006 * 109.46991 * 94.88824 * 24 23 6 47 47 H 1.08998 * 109.47072 * 214.89138 * 24 23 6 48 48 H 1.08993 * 109.46949 * 334.89060 * 24 23 6 49 49 H 1.09000 * 109.47527 * 270.31935 * 26 25 23 50 50 H 1.09003 * 109.47248 * 30.31955 * 26 25 23 51 51 H 1.09001 * 109.47519 * 150.31572 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6757 0.0005 7 6 3.9863 5.0183 0.0005 8 7 4.7506 5.1784 1.2449 9 6 5.8097 6.1840 1.0866 10 6 6.8867 5.9451 2.1131 11 1 6.8392 5.0768 2.7536 12 6 7.9327 6.8351 2.2348 13 7 8.8725 6.6269 3.1310 14 14 8.0152 8.3366 1.1267 15 1 7.3034 9.4684 1.7729 16 1 9.4352 8.7085 0.9018 17 1 7.3725 8.0266 -0.1757 18 6 3.8651 5.5186 2.3665 19 6 4.6842 5.7018 3.6724 20 6 3.6267 5.4414 4.7736 21 6 2.7612 4.2965 4.2081 22 6 2.9128 4.3455 2.6776 23 6 4.0561 2.5169 -0.0059 24 6 5.5609 2.5979 -0.0128 25 6 3.4312 1.2846 -0.0004 26 6 4.2537 0.0220 -0.0017 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2129 2.3203 0.0002 31 1 1.3342 4.5114 0.0019 32 1 3.2378 5.8076 -0.0701 33 1 4.6626 5.0816 -0.8519 34 1 6.2372 6.1071 0.0868 35 1 5.3890 7.1798 1.2262 36 1 9.6085 7.2528 3.2163 37 1 3.2974 6.4218 2.1428 38 1 5.0769 6.7160 3.7460 39 1 5.4896 4.9695 3.7293 40 1 3.0205 6.3321 4.9387 41 1 4.1095 5.1325 5.7007 42 1 3.1154 3.3380 4.5879 43 1 1.7176 4.4451 4.4856 44 1 3.3406 3.4110 2.3146 45 1 1.9425 4.5176 2.2117 46 1 5.9333 2.5274 1.0093 47 1 5.9663 1.7772 -0.6046 48 1 5.8716 3.5477 -0.4479 49 1 4.4519 -0.2815 -1.0297 50 1 5.1978 0.2028 0.5122 51 1 3.7064 -0.7688 0.5115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203720079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:03 Heat of formation + Delta-G solvation = -29.721368 kcal Electronic energy + Delta-G solvation = -28526.772747 eV Core-core repulsion = 25004.397306 eV Total energy + Delta-G solvation = -3522.375441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43999 -39.98834 -38.44957 -36.30411 -34.70653 -34.19096 -32.60947 -30.38802 -28.97555 -28.93279 -28.37263 -27.89122 -26.79931 -25.23581 -22.93078 -21.75079 -21.37422 -21.19724 -20.56334 -18.72664 -18.44073 -17.59225 -16.95007 -16.63794 -16.41265 -16.06648 -15.83089 -15.56891 -15.08933 -14.79494 -14.73567 -14.51785 -14.20549 -14.12234 -13.98165 -13.81238 -13.54823 -13.42380 -13.13568 -12.93801 -12.82466 -12.68957 -12.51902 -12.45923 -12.34411 -12.11547 -11.93733 -11.81761 -11.65560 -11.60614 -11.49992 -11.43731 -11.22056 -11.17909 -10.90019 -10.64768 -9.37221 -8.92634 -8.77730 -8.15789 -6.13295 0.50401 0.57560 1.34750 1.37377 1.45973 2.39926 2.48503 2.80177 3.16857 3.31820 3.81431 3.93539 3.96129 3.96976 4.06698 4.22910 4.29791 4.39069 4.43932 4.46161 4.53154 4.55656 4.58247 4.66203 4.73356 4.78871 4.79737 4.86007 4.86676 4.87820 4.92023 4.96723 4.99245 5.02982 5.03782 5.06144 5.17963 5.20161 5.31195 5.33595 5.44087 5.50865 5.55478 5.57019 5.63540 5.65713 5.74487 5.93226 5.98494 6.15805 6.57405 6.58562 6.76402 6.93508 7.46362 8.99631 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.004255 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.340688 B = 6579.264369 C = 7246.888796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.105 4.105 7 C 0.094 3.906 8 N -0.519 5.519 9 C 0.171 3.829 10 C -0.482 4.482 11 H 0.054 0.946 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.929 3.071 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.253 1.253 18 C 0.092 3.908 19 C -0.095 4.095 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.101 4.101 23 C -0.031 4.031 24 C -0.095 4.095 25 C -0.138 4.138 26 C -0.099 4.099 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.023 0.977 35 H -0.018 1.018 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 -9.782 -6.691 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.096 4.096 6 C -0.106 4.106 7 C -0.033 4.033 8 N -0.242 5.242 9 C 0.044 3.956 10 C -0.520 4.520 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.591 5.591 14 Si 0.755 3.245 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.177 1.177 18 C -0.016 4.016 19 C -0.133 4.133 20 C -0.163 4.163 21 C -0.153 4.153 22 C -0.139 4.139 23 C -0.032 4.032 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.156 4.156 27 H 0.134 0.866 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.000 1.000 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.041 -10.349 -6.539 22.636 hybrid contribution 0.278 1.939 -0.302 1.982 sum -18.762 -8.410 -6.841 21.669 Atomic orbital electron populations 1.23286 0.76875 1.05244 1.02032 1.86017 1.23008 1.26708 1.88851 1.18849 0.91602 0.84780 0.97749 1.21261 1.00629 0.91473 1.09372 1.20894 0.93159 0.97765 0.97814 1.19537 0.93485 0.94051 1.03502 1.20996 0.96031 0.93557 0.92718 1.61998 1.11689 1.47317 1.03227 1.19986 0.90317 0.88986 0.96294 1.21306 1.05000 1.08447 1.17289 0.92792 1.25636 0.95559 1.00742 0.96746 1.70034 1.13473 1.38711 1.36872 0.85980 0.77192 0.80575 0.80762 1.20117 1.21416 1.17654 1.22475 0.92398 0.95760 0.91004 1.22522 0.96866 1.00278 0.93659 1.22391 0.97147 0.98846 0.97876 1.22076 0.99940 0.98071 0.95177 1.22288 0.97878 0.98059 0.95646 1.19443 0.96041 0.91289 0.96408 1.20599 0.90961 1.01857 1.01730 1.19238 0.91271 0.95789 1.07577 1.20561 0.98816 0.93891 1.02305 0.86552 0.92085 0.91860 0.83444 0.84726 0.93905 0.90963 0.95887 0.99991 0.92992 0.95153 0.94487 0.92603 0.91273 0.92230 0.92588 0.90353 0.91968 0.91183 0.92414 0.91322 0.92309 0.90992 0.91745 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.42 9.54 -92.34 -0.88 -8.30 16 3 C 0.12 2.92 6.66 22.51 0.15 3.07 16 4 C -0.21 -4.63 9.04 22.37 0.20 -4.43 16 5 C -0.08 -1.89 7.36 22.26 0.16 -1.72 16 6 C -0.10 -3.07 3.16 -19.85 -0.06 -3.13 16 7 C 0.09 3.07 4.30 85.55 0.37 3.44 16 8 N -0.52 -20.33 3.39 -873.08 -2.96 -23.30 16 9 C 0.17 7.91 3.70 85.56 0.32 8.23 16 10 C -0.48 -26.51 7.48 25.60 0.19 -26.32 16 11 H 0.05 3.32 6.01 -2.91 -0.02 3.30 16 12 C 0.01 0.54 5.47 84.65 0.46 1.00 16 13 N -0.95 -58.59 13.96 21.45 0.30 -58.30 16 14 Si 0.93 44.02 27.36 68.60 1.88 45.90 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.25 -11.17 6.71 99.48 0.67 -10.50 16 18 C 0.09 3.37 2.41 46.11 0.11 3.48 16 19 C -0.10 -3.94 4.53 32.00 0.15 -3.79 16 20 C -0.12 -3.99 6.82 31.67 0.22 -3.78 16 21 C -0.11 -3.24 6.80 31.32 0.21 -3.02 16 22 C -0.10 -3.10 4.53 31.32 0.14 -2.95 16 23 C -0.03 -0.96 5.24 -19.88 -0.10 -1.06 16 24 C -0.09 -3.11 8.12 71.24 0.58 -2.53 16 25 C -0.14 -3.88 5.89 -19.77 -0.12 -3.99 16 26 C -0.10 -2.45 8.99 71.23 0.64 -1.81 16 27 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 29 H 0.06 0.70 7.66 -2.38 -0.02 0.68 16 30 H 0.15 2.39 6.30 -2.91 -0.02 2.37 16 31 H 0.13 2.74 7.93 -2.91 -0.02 2.72 16 32 H 0.04 1.28 7.63 -2.39 -0.02 1.26 16 33 H 0.07 2.39 6.65 -2.39 -0.02 2.37 16 34 H 0.02 1.07 6.95 -2.38 -0.02 1.05 16 35 H -0.02 -0.82 7.07 -2.39 -0.02 -0.84 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.03 1.10 8.04 -2.39 -0.02 1.08 16 38 H 0.04 1.71 7.64 -2.38 -0.02 1.69 16 39 H 0.06 2.73 5.87 -2.39 -0.01 2.71 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 2.14 6.04 -2.39 -0.01 2.12 16 45 H 0.07 1.86 6.52 -2.39 -0.02 1.85 16 46 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.07 1.93 7.00 -2.39 -0.02 1.92 16 48 H 0.06 2.08 6.22 -2.39 -0.01 2.07 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.06 1.61 6.82 -2.39 -0.02 1.59 16 51 H 0.07 1.59 7.53 -2.39 -0.02 1.57 16 Total: -1.00 -64.71 376.33 3.93 -60.79 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.86 Total: 21.16 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 4.73 Total: -37.95 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.66 Total: -81.59 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.88 Total: -8.30 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -64.71 3.93 -60.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203720079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.066 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds