Wall clock time and date at job start Tue Mar 31 2020 11:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00166 * 2 1 4 4 H 1.48497 * 109.46915 * 90.00500 * 3 2 1 5 5 H 1.48500 * 109.47132 * 210.00366 * 3 2 1 6 6 H 1.48501 * 109.47210 * 330.00281 * 3 2 1 7 7 C 1.37881 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99756 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99896 * 179.97438 * 7 2 1 10 10 N 1.46908 * 109.47016 * 176.56291 * 9 7 2 11 11 C 1.46898 * 110.99855 * 164.29525 * 10 9 7 12 12 C 1.50698 * 109.47485 * 283.86080 * 11 10 9 13 13 C 1.38281 * 119.97619 * 89.99881 * 12 11 10 14 14 C 1.38247 * 120.11576 * 180.02562 * 13 12 11 15 15 C 1.38163 * 120.05124 * 359.95480 * 14 13 12 16 16 C 1.38709 * 119.94743 * 0.02846 * 15 14 13 17 17 O 1.35902 * 120.05666 * 180.02562 * 16 15 14 18 18 C 1.38131 * 119.96881 * 269.72817 * 12 11 10 19 19 C 1.46899 * 110.99626 * 288.24598 * 10 9 7 20 20 C 1.53008 * 109.47433 * 289.27124 * 19 10 9 21 21 C 1.52996 * 109.46147 * 164.05102 * 20 19 10 22 22 C 1.52980 * 109.50703 * 315.98523 * 21 20 19 23 23 C 1.53005 * 109.47230 * 112.93572 * 22 21 20 24 24 C 1.52999 * 109.43223 * 284.04738 * 23 22 21 25 25 C 1.52982 * 109.49029 * 75.95958 * 24 23 22 26 26 C 1.53001 * 109.50556 * 247.06512 * 25 24 23 27 27 H 0.96995 * 120.00035 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47653 * 296.55858 * 9 7 2 29 29 H 1.09000 * 109.47223 * 56.56205 * 9 7 2 30 30 H 1.09001 * 109.47265 * 43.85933 * 11 10 9 31 31 H 1.09004 * 109.46900 * 163.85536 * 11 10 9 32 32 H 1.08004 * 119.94230 * 359.97438 * 13 12 11 33 33 H 1.07999 * 119.97559 * 179.97438 * 14 13 12 34 34 H 1.08007 * 120.02936 * 180.02562 * 15 14 13 35 35 H 0.96704 * 114.00117 * 89.99446 * 17 16 15 36 36 H 1.07997 * 120.02926 * 359.97438 * 18 12 11 37 37 H 1.09005 * 109.47156 * 49.27502 * 19 10 9 38 38 H 1.09002 * 109.47246 * 284.04124 * 20 19 10 39 39 H 1.08992 * 109.47547 * 44.04744 * 20 19 10 40 40 H 1.09002 * 109.46086 * 195.97703 * 21 20 19 41 41 H 1.08992 * 109.45778 * 75.99275 * 21 20 19 42 42 H 1.09003 * 109.47181 * 352.93798 * 22 21 20 43 43 H 1.09002 * 109.47321 * 232.93734 * 22 21 20 44 44 H 1.08995 * 109.47993 * 164.05279 * 23 22 21 45 45 H 1.09009 * 109.47273 * 44.03011 * 23 22 21 46 46 H 1.09003 * 109.46807 * 315.95234 * 24 23 22 47 47 H 1.09003 * 109.46586 * 195.96427 * 24 23 22 48 48 H 1.08999 * 109.46601 * 127.05375 * 25 24 23 49 49 H 1.08997 * 109.46370 * 7.07124 * 25 24 23 50 50 H 1.09000 * 109.47258 * 284.01472 * 26 25 24 51 51 H 1.08996 * 109.47452 * 164.00593 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5767 0.0814 11 6 5.4213 -2.6550 -0.2863 12 6 5.5592 -2.5492 -1.7832 13 6 5.7120 -1.3097 -2.3771 14 6 5.8382 -1.2093 -3.7501 15 6 5.8129 -2.3478 -4.5324 16 6 5.6601 -3.5923 -3.9392 17 8 5.6354 -4.7137 -4.7065 18 6 5.5384 -3.6908 -2.5605 19 6 3.7723 -3.1371 1.4199 20 6 4.7138 -2.4657 2.4219 21 6 4.2233 -2.7399 3.8449 22 6 2.7069 -2.5485 3.9083 23 6 2.0330 -3.8972 4.1690 24 6 2.0366 -4.7251 2.8823 25 6 3.4379 -5.2900 2.6427 26 6 4.0432 -4.6429 1.3954 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.7344 -0.9203 29 1 3.8752 -0.6280 0.8564 30 1 5.9649 -1.8375 0.1873 31 1 5.8317 -3.6071 0.0500 32 1 5.7319 -0.4186 -1.7673 33 1 5.9570 -0.2401 -4.2116 34 1 5.9120 -2.2690 -5.6050 35 1 6.5055 -5.1097 -4.8525 36 1 5.4239 -4.6590 -2.0958 37 1 2.7387 -2.9587 1.7166 38 1 5.7199 -2.8675 2.3006 39 1 4.7279 -1.3906 2.2432 40 1 4.7060 -2.0479 4.5350 41 1 4.4722 -3.7638 4.1237 42 1 2.3520 -2.1421 2.9612 43 1 2.4613 -1.8577 4.7149 44 1 1.0053 -3.7334 4.4930 45 1 2.5786 -4.4318 4.9467 46 1 1.7515 -4.0919 2.0421 47 1 1.3253 -5.5457 2.9764 48 1 3.3750 -6.3685 2.4983 49 1 4.0685 -5.0752 3.5055 50 1 3.5915 -5.0789 0.5043 51 1 5.1188 -4.8184 1.3805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203861008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:05 Heat of formation + Delta-G solvation = -14.140010 kcal Electronic energy + Delta-G solvation = -28445.979120 eV Core-core repulsion = 24924.279338 eV Total energy + Delta-G solvation = -3521.699782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88870 -39.21188 -36.94091 -35.63568 -32.68015 -32.43308 -31.85019 -30.62430 -29.46162 -27.79196 -25.93538 -25.53168 -24.03680 -22.40727 -21.68079 -21.39901 -20.57208 -20.15665 -18.40651 -17.68510 -16.71988 -16.13726 -15.93523 -15.50498 -15.21312 -14.73778 -14.31686 -14.15448 -13.83187 -13.77619 -13.56044 -13.35951 -13.10301 -12.92930 -12.52266 -12.38791 -12.23421 -11.99779 -11.76194 -11.49811 -11.32858 -11.24328 -11.03059 -10.89424 -10.81903 -10.67422 -10.60780 -10.35534 -10.27884 -10.03357 -9.98819 -9.82254 -9.40467 -9.30230 -9.22482 -8.57428 -8.51646 -8.30474 -7.29610 -6.02646 -3.98217 1.51448 1.61894 3.26775 3.35420 3.35785 3.87172 4.33054 4.42888 4.83739 4.97118 5.10190 5.14759 5.20520 5.28924 5.30641 5.37041 5.38921 5.53896 5.56023 5.58779 5.61441 5.65525 5.67640 5.78362 5.86374 5.94724 6.02783 6.13567 6.14582 6.22451 6.25149 6.26220 6.31530 6.34484 6.41899 6.50025 6.55093 6.59192 6.64161 6.66194 6.68615 6.73955 6.82252 6.90390 6.93635 7.06032 7.07504 7.19944 7.68021 7.79847 7.94868 8.10253 8.69694 9.07901 9.60047 11.10614 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009623 B = 0.005702 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.970317 B = 4909.442159 C = 6770.764442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.287 1.287 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.155 3.845 10 N -0.513 5.513 11 C 0.085 3.915 12 C -0.042 4.042 13 C -0.115 4.115 14 C -0.106 4.106 15 C -0.153 4.153 16 C 0.096 3.904 17 O -0.500 6.500 18 C -0.125 4.125 19 C 0.072 3.928 20 C -0.151 4.151 21 C -0.117 4.117 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.110 4.110 27 H 0.262 0.738 28 H 0.031 0.969 29 H -0.012 1.012 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.383 0.617 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 -7.772 1.507 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.098 0.902 9 C 0.029 3.971 10 N -0.235 5.235 11 C -0.043 4.043 12 C -0.042 4.042 13 C -0.134 4.134 14 C -0.124 4.124 15 C -0.172 4.172 16 C 0.052 3.948 17 O -0.309 6.309 18 C -0.144 4.144 19 C -0.036 4.036 20 C -0.190 4.190 21 C -0.155 4.155 22 C -0.174 4.174 23 C -0.150 4.150 24 C -0.170 4.170 25 C -0.159 4.159 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.006 0.994 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.237 0.763 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.588 -7.820 1.146 14.864 hybrid contribution 1.284 1.497 0.494 2.033 sum 13.872 -6.323 1.640 15.333 Atomic orbital electron populations 1.69885 1.06020 1.26628 1.51314 1.24857 0.94632 0.98526 0.95095 0.86973 0.80471 0.84614 0.78378 1.20413 1.19304 1.21259 1.20989 0.88682 0.94520 1.49753 0.90191 1.20321 0.97166 0.84264 0.95309 1.62235 1.12606 1.23116 1.25567 1.21083 0.92090 1.00684 0.90456 1.19741 0.96083 0.92360 0.96062 1.21132 1.00037 0.97371 0.94842 1.20940 0.99837 0.97908 0.93696 1.21282 1.03620 0.92297 0.99984 1.18427 1.01339 0.85807 0.89208 1.84865 1.34085 1.40702 1.71255 1.21196 1.01662 0.99100 0.92397 1.22333 1.02136 0.92491 0.86619 1.22328 0.99075 1.01537 0.96048 1.21742 0.96134 1.01151 0.96501 1.21904 0.95020 0.96990 1.03498 1.21637 1.00136 0.96114 0.97121 1.21865 0.96530 0.99583 0.99065 1.21802 0.96796 0.98832 0.98478 1.21686 0.99331 0.95781 0.98034 0.92788 0.95118 0.99441 0.94640 0.90777 0.86167 0.86047 0.86065 0.76284 0.85722 0.85819 0.93058 0.91852 0.93316 0.91431 0.88901 0.92964 0.92536 0.92764 0.89516 0.92901 0.92950 0.91485 0.91289 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.32 27.40 -169.99 -4.66 16.66 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.30 6.64 56.52 0.38 -5.93 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.50 -13.80 8.95 -34.44 -0.31 -14.11 16 8 H 0.08 2.43 7.92 -52.49 -0.42 2.01 16 9 C 0.16 3.61 3.51 -4.97 -0.02 3.59 16 10 N -0.51 -10.11 4.31 -229.50 -0.99 -11.10 16 11 C 0.08 1.40 3.86 -4.98 -0.02 1.38 16 12 C -0.04 -0.70 5.17 -104.65 -0.54 -1.24 16 13 C -0.12 -1.90 8.29 -39.56 -0.33 -2.23 16 14 C -0.11 -1.56 10.04 -39.61 -0.40 -1.96 16 15 C -0.15 -2.19 9.99 -39.43 -0.39 -2.58 16 16 C 0.10 1.43 6.70 -39.22 -0.26 1.17 16 17 O -0.50 -6.51 13.50 -19.43 -0.26 -6.78 16 18 C -0.12 -1.95 9.64 -39.43 -0.38 -2.33 16 19 C 0.07 1.25 1.49 -67.70 -0.10 1.15 16 20 C -0.15 -2.38 4.04 -26.73 -0.11 -2.49 16 21 C -0.12 -1.66 5.48 -26.74 -0.15 -1.81 16 22 C -0.14 -2.13 5.47 -26.74 -0.15 -2.28 16 23 C -0.11 -1.56 5.59 -26.73 -0.15 -1.71 16 24 C -0.13 -1.94 5.47 -26.74 -0.15 -2.08 16 25 C -0.12 -1.60 5.48 -26.74 -0.15 -1.74 16 26 C -0.11 -1.64 4.59 -26.72 -0.12 -1.76 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.03 0.74 4.89 -51.93 -0.25 0.48 16 29 H -0.01 -0.28 5.39 -51.93 -0.28 -0.56 16 30 H 0.04 0.58 7.55 -51.93 -0.39 0.19 16 31 H 0.07 1.08 6.15 -51.93 -0.32 0.77 16 32 H 0.12 1.98 7.47 -52.48 -0.39 1.59 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 35 H 0.38 2.84 9.06 45.56 0.41 3.26 16 36 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 2.47 1.84 -51.93 -0.10 2.38 16 38 H 0.05 0.73 7.35 -51.93 -0.38 0.35 16 39 H 0.06 1.13 6.16 -51.93 -0.32 0.81 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.86 4.69 -51.93 -0.24 0.62 16 42 H 0.09 1.79 5.47 -51.93 -0.28 1.50 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.66 7.47 -51.92 -0.39 0.27 16 46 H 0.09 1.54 5.47 -51.93 -0.28 1.25 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.82 4.69 -51.93 -0.24 0.58 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.05 0.67 6.66 -51.93 -0.35 0.32 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -30.91 368.84 -10.58 -41.50 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.19 Total: 9.71 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -3.81 Total: -29.12 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.22 Total: -37.53 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.26 Total: -6.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.66 Total: 16.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.91 -10.58 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203861008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.356 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds