Wall clock time and date at job start Tue Mar 31 2020 11:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00166 * 2 1 4 4 H 1.48497 * 109.46915 * 90.00500 * 3 2 1 5 5 H 1.48500 * 109.47132 * 210.00366 * 3 2 1 6 6 H 1.48501 * 109.47210 * 330.00281 * 3 2 1 7 7 C 1.37881 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99756 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99896 * 179.97438 * 7 2 1 10 10 N 1.46908 * 109.47016 * 176.56291 * 9 7 2 11 11 C 1.46898 * 110.99855 * 164.29525 * 10 9 7 12 12 C 1.50698 * 109.47485 * 283.86080 * 11 10 9 13 13 C 1.38281 * 119.97619 * 89.99881 * 12 11 10 14 14 C 1.38247 * 120.11576 * 180.02562 * 13 12 11 15 15 C 1.38163 * 120.05124 * 359.95480 * 14 13 12 16 16 C 1.38709 * 119.94743 * 0.02846 * 15 14 13 17 17 O 1.35902 * 120.05666 * 180.02562 * 16 15 14 18 18 C 1.38131 * 119.96881 * 269.72817 * 12 11 10 19 19 C 1.46899 * 110.99626 * 288.24598 * 10 9 7 20 20 C 1.53008 * 109.47433 * 289.27124 * 19 10 9 21 21 C 1.52996 * 109.46147 * 164.05102 * 20 19 10 22 22 C 1.52980 * 109.50703 * 315.98523 * 21 20 19 23 23 C 1.53005 * 109.47230 * 112.93572 * 22 21 20 24 24 C 1.52999 * 109.43223 * 284.04738 * 23 22 21 25 25 C 1.52982 * 109.49029 * 75.95958 * 24 23 22 26 26 C 1.53001 * 109.50556 * 247.06512 * 25 24 23 27 27 H 0.96995 * 120.00035 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47653 * 296.55858 * 9 7 2 29 29 H 1.09000 * 109.47223 * 56.56205 * 9 7 2 30 30 H 1.09001 * 109.47265 * 43.85933 * 11 10 9 31 31 H 1.09004 * 109.46900 * 163.85536 * 11 10 9 32 32 H 1.08004 * 119.94230 * 359.97438 * 13 12 11 33 33 H 1.07999 * 119.97559 * 179.97438 * 14 13 12 34 34 H 1.08007 * 120.02936 * 180.02562 * 15 14 13 35 35 H 0.96704 * 114.00117 * 89.99446 * 17 16 15 36 36 H 1.07997 * 120.02926 * 359.97438 * 18 12 11 37 37 H 1.09005 * 109.47156 * 49.27502 * 19 10 9 38 38 H 1.09002 * 109.47246 * 284.04124 * 20 19 10 39 39 H 1.08992 * 109.47547 * 44.04744 * 20 19 10 40 40 H 1.09002 * 109.46086 * 195.97703 * 21 20 19 41 41 H 1.08992 * 109.45778 * 75.99275 * 21 20 19 42 42 H 1.09003 * 109.47181 * 352.93798 * 22 21 20 43 43 H 1.09002 * 109.47321 * 232.93734 * 22 21 20 44 44 H 1.08995 * 109.47993 * 164.05279 * 23 22 21 45 45 H 1.09009 * 109.47273 * 44.03011 * 23 22 21 46 46 H 1.09003 * 109.46807 * 315.95234 * 24 23 22 47 47 H 1.09003 * 109.46586 * 195.96427 * 24 23 22 48 48 H 1.08999 * 109.46601 * 127.05375 * 25 24 23 49 49 H 1.08997 * 109.46370 * 7.07124 * 25 24 23 50 50 H 1.09000 * 109.47258 * 284.01472 * 26 25 24 51 51 H 1.08996 * 109.47452 * 164.00593 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5767 0.0814 11 6 5.4213 -2.6550 -0.2863 12 6 5.5592 -2.5492 -1.7832 13 6 5.7120 -1.3097 -2.3771 14 6 5.8382 -1.2093 -3.7501 15 6 5.8129 -2.3478 -4.5324 16 6 5.6601 -3.5923 -3.9392 17 8 5.6354 -4.7137 -4.7065 18 6 5.5384 -3.6908 -2.5605 19 6 3.7723 -3.1371 1.4199 20 6 4.7138 -2.4657 2.4219 21 6 4.2233 -2.7399 3.8449 22 6 2.7069 -2.5485 3.9083 23 6 2.0330 -3.8972 4.1690 24 6 2.0366 -4.7251 2.8823 25 6 3.4379 -5.2900 2.6427 26 6 4.0432 -4.6429 1.3954 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.7344 -0.9203 29 1 3.8752 -0.6280 0.8564 30 1 5.9649 -1.8375 0.1873 31 1 5.8317 -3.6071 0.0500 32 1 5.7319 -0.4186 -1.7673 33 1 5.9570 -0.2401 -4.2116 34 1 5.9120 -2.2690 -5.6050 35 1 6.5055 -5.1097 -4.8525 36 1 5.4239 -4.6590 -2.0958 37 1 2.7387 -2.9587 1.7166 38 1 5.7199 -2.8675 2.3006 39 1 4.7279 -1.3906 2.2432 40 1 4.7060 -2.0479 4.5350 41 1 4.4722 -3.7638 4.1237 42 1 2.3520 -2.1421 2.9612 43 1 2.4613 -1.8577 4.7149 44 1 1.0053 -3.7334 4.4930 45 1 2.5786 -4.4318 4.9467 46 1 1.7515 -4.0919 2.0421 47 1 1.3253 -5.5457 2.9764 48 1 3.3750 -6.3685 2.4983 49 1 4.0685 -5.0752 3.5055 50 1 3.5915 -5.0789 0.5043 51 1 5.1188 -4.8184 1.3805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203861008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:04 Heat of formation + Delta-G solvation = -33.570994 kcal Electronic energy + Delta-G solvation = -28446.821711 eV Core-core repulsion = 24924.279338 eV Total energy + Delta-G solvation = -3522.542373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16243 -40.37608 -38.11354 -36.93811 -34.73260 -33.65300 -33.05789 -32.10097 -30.64844 -29.52060 -27.16962 -26.79108 -25.61581 -23.63582 -23.03126 -22.83380 -21.82330 -21.41720 -19.70399 -18.87415 -18.74655 -17.38263 -17.24213 -16.77545 -16.45382 -16.22854 -15.85509 -15.52560 -15.10525 -15.02004 -14.89721 -14.60686 -14.54967 -14.38397 -14.07011 -13.76048 -13.48555 -13.37436 -13.21946 -12.77578 -12.62396 -12.56858 -12.48028 -12.45108 -12.18094 -11.99419 -11.88692 -11.81907 -11.62566 -11.55492 -11.45646 -11.18541 -11.17294 -10.76233 -10.62559 -10.49686 -9.72978 -9.48535 -8.82329 -8.24985 -6.24608 0.35408 0.45096 1.29446 1.31433 1.41276 2.33548 2.70367 3.09378 3.29333 3.46169 3.76722 3.92352 3.99067 4.02688 4.08712 4.22310 4.23743 4.32610 4.34894 4.38610 4.42537 4.46565 4.47835 4.53943 4.65267 4.72846 4.83125 4.86310 4.92019 5.01389 5.04515 5.08154 5.09739 5.12417 5.13625 5.23158 5.25296 5.33334 5.34864 5.40875 5.48993 5.49612 5.49991 5.56017 5.64112 5.70760 5.76793 5.81533 5.97174 6.11545 6.55976 6.74428 6.81448 6.92624 7.37609 8.91996 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009623 B = 0.005702 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.970317 B = 4909.442159 C = 6770.764442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.249 1.249 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.033 0.967 9 C 0.171 3.829 10 N -0.531 5.531 11 C 0.090 3.910 12 C -0.059 4.059 13 C -0.138 4.138 14 C -0.108 4.108 15 C -0.156 4.156 16 C 0.097 3.903 17 O -0.508 6.508 18 C -0.137 4.137 19 C 0.068 3.932 20 C -0.145 4.145 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.108 4.108 24 C -0.133 4.133 25 C -0.113 4.113 26 C -0.103 4.103 27 H 0.263 0.737 28 H 0.027 0.973 29 H -0.012 1.012 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.408 0.592 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.049 0.951 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.634 -8.601 1.932 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.186 4.186 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.173 1.173 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.044 3.956 10 N -0.253 5.253 11 C -0.037 4.037 12 C -0.060 4.060 13 C -0.156 4.156 14 C -0.126 4.126 15 C -0.175 4.175 16 C 0.053 3.947 17 O -0.321 6.321 18 C -0.156 4.156 19 C -0.039 4.039 20 C -0.184 4.184 21 C -0.148 4.148 22 C -0.174 4.174 23 C -0.145 4.145 24 C -0.170 4.170 25 C -0.151 4.151 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.005 0.995 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.267 0.733 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.068 0.932 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.629 -8.679 1.568 17.946 hybrid contribution 0.291 1.624 0.282 1.674 sum 15.920 -7.055 1.850 17.511 Atomic orbital electron populations 1.70048 1.07944 1.27624 1.53341 1.25705 0.95408 1.02506 0.94932 0.85927 0.79767 0.79655 0.78974 1.19458 1.17275 1.21013 1.21181 0.91154 0.92701 1.48514 0.94830 1.19973 0.93998 0.86760 0.94839 1.62101 1.15082 1.20684 1.27409 1.21103 0.89914 1.01885 0.90799 1.19840 0.97073 0.92931 0.96167 1.21246 1.01396 0.97166 0.95826 1.21229 0.98932 0.99267 0.93130 1.21577 1.02835 0.91850 1.01214 1.18541 1.00425 0.86668 0.89091 1.84796 1.36410 1.40203 1.70717 1.21329 1.02146 0.99090 0.93044 1.22335 1.01166 0.94399 0.85997 1.22245 0.99781 0.99761 0.96576 1.21723 0.94545 1.02921 0.95613 1.21846 0.96637 0.97868 1.01049 1.21623 1.00138 0.95305 0.97447 1.21813 0.98085 0.99231 0.97860 1.21773 0.95556 0.99618 0.98132 1.21616 1.00659 0.93551 0.98244 0.92780 0.95493 0.99469 0.94323 0.88610 0.86780 0.83850 0.83725 0.73313 0.85132 0.88878 0.90737 0.94395 0.91983 0.89050 0.93467 0.92797 0.93174 0.89759 0.93774 0.91977 0.91008 0.89608 0.93237 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 2 C 0.01 0.67 5.47 84.66 0.46 1.13 16 3 Si 0.93 44.90 27.40 68.60 1.88 46.78 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.25 -11.13 6.64 99.48 0.66 -10.47 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.50 -28.94 8.95 25.60 0.23 -28.71 16 8 H 0.03 2.21 7.92 -2.91 -0.02 2.19 16 9 C 0.17 8.18 3.51 85.55 0.30 8.48 16 10 N -0.53 -21.32 4.31 -880.00 -3.80 -25.11 16 11 C 0.09 2.92 3.86 85.56 0.33 3.25 16 12 C -0.06 -1.94 5.17 -19.88 -0.10 -2.04 16 13 C -0.14 -4.45 8.29 22.28 0.18 -4.26 16 14 C -0.11 -3.01 10.04 22.25 0.22 -2.79 16 15 C -0.16 -4.14 9.99 22.36 0.22 -3.92 16 16 C 0.10 2.72 6.70 22.51 0.15 2.87 16 17 O -0.51 -12.13 13.50 -92.44 -1.25 -13.38 16 18 C -0.14 -4.16 9.64 22.37 0.22 -3.94 16 19 C 0.07 2.41 1.49 44.92 0.07 2.48 16 20 C -0.14 -4.40 4.04 30.60 0.12 -4.27 16 21 C -0.11 -2.90 5.48 30.59 0.17 -2.73 16 22 C -0.14 -4.29 5.47 30.59 0.17 -4.12 16 23 C -0.11 -2.92 5.59 30.60 0.17 -2.74 16 24 C -0.13 -3.86 5.47 30.59 0.17 -3.69 16 25 C -0.11 -2.73 5.48 30.59 0.17 -2.56 16 26 C -0.10 -2.93 4.59 30.60 0.14 -2.78 16 27 H 0.26 15.71 8.31 -92.71 -0.77 14.93 16 28 H 0.03 1.31 4.89 -2.39 -0.01 1.30 16 29 H -0.01 -0.58 5.39 -2.39 -0.01 -0.59 16 30 H 0.04 1.22 7.55 -2.39 -0.02 1.20 16 31 H 0.10 2.61 6.15 -2.38 -0.01 2.60 16 32 H 0.11 3.72 7.47 -2.91 -0.02 3.70 16 33 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.41 4.98 9.06 -74.05 -0.67 4.31 16 36 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.09 3.97 1.84 -2.38 0.00 3.96 16 38 H 0.07 1.90 7.35 -2.39 -0.02 1.89 16 39 H 0.04 1.34 6.16 -2.39 -0.01 1.32 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.97 4.69 -2.39 -0.01 1.95 16 42 H 0.05 1.94 5.47 -2.39 -0.01 1.93 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.80 7.47 -2.38 -0.02 1.78 16 46 H 0.04 1.69 5.47 -2.39 -0.01 1.67 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.76 4.69 -2.39 -0.01 1.75 16 50 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 1.73 6.66 -2.39 -0.02 1.71 16 Total: -1.00 -71.16 368.84 0.75 -70.41 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.22 Total: 31.58 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 3.39 Total: -50.36 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.50 Total: -85.04 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.25 Total: -13.38 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -71.16 0.75 -70.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203861008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.837 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds