Wall clock time and date at job start Tue Mar 31 2020 11:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00471 * 2 1 4 4 H 1.48497 * 109.47233 * 89.99692 * 3 2 1 5 5 H 1.48503 * 109.47163 * 210.00219 * 3 2 1 6 6 H 1.48498 * 109.46866 * 329.99931 * 3 2 1 7 7 C 1.37882 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00243 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47110 * 176.55808 * 9 7 2 11 11 C 1.46898 * 110.99875 * 164.29914 * 10 9 7 12 12 C 1.50704 * 109.46886 * 283.85996 * 11 10 9 13 13 C 1.38258 * 119.94326 * 269.72559 * 12 11 10 14 14 C 1.38148 * 120.05609 * 179.72780 * 13 12 11 15 15 C 1.38726 * 119.94182 * 0.54477 * 14 13 12 16 16 O 1.35903 * 120.05945 * 179.74628 * 15 14 13 17 17 C 1.38730 * 119.88979 * 359.73239 * 15 14 13 18 18 C 1.38138 * 119.94509 * 359.97438 * 17 15 14 19 19 C 1.46899 * 110.99808 * 288.24799 * 10 9 7 20 20 C 1.53006 * 109.47706 * 289.27208 * 19 10 9 21 21 C 1.52991 * 109.46484 * 164.04751 * 20 19 10 22 22 C 1.52980 * 109.50815 * 315.99074 * 21 20 19 23 23 C 1.53005 * 109.47230 * 112.93231 * 22 21 20 24 24 C 1.53007 * 109.43364 * 284.04293 * 23 22 21 25 25 C 1.52990 * 109.48167 * 75.96057 * 24 23 22 26 26 C 1.52996 * 109.50123 * 247.06315 * 25 24 23 27 27 H 0.97003 * 119.99890 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47209 * 296.55796 * 9 7 2 29 29 H 1.09000 * 109.46752 * 56.55809 * 9 7 2 30 30 H 1.09005 * 109.47504 * 43.85795 * 11 10 9 31 31 H 1.08994 * 109.47514 * 163.85932 * 11 10 9 32 32 H 1.08005 * 119.97342 * 359.97438 * 13 12 11 33 33 H 1.08001 * 120.03092 * 180.27468 * 14 13 12 34 34 H 0.96694 * 114.00428 * 269.98539 * 16 15 14 35 35 H 1.08006 * 120.03002 * 179.97438 * 17 15 14 36 36 H 1.07997 * 119.97694 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.47156 * 49.27844 * 19 10 9 38 38 H 1.08999 * 109.47604 * 284.04806 * 20 19 10 39 39 H 1.09002 * 109.47120 * 44.04803 * 20 19 10 40 40 H 1.08997 * 109.46619 * 195.97665 * 21 20 19 41 41 H 1.09001 * 109.45495 * 75.99595 * 21 20 19 42 42 H 1.09003 * 109.47181 * 352.93458 * 22 21 20 43 43 H 1.09002 * 109.47321 * 232.93393 * 22 21 20 44 44 H 1.08995 * 109.47993 * 164.05279 * 23 22 21 45 45 H 1.08999 * 109.47800 * 44.03031 * 23 22 21 46 46 H 1.08997 * 109.46585 * 315.95580 * 24 23 22 47 47 H 1.08994 * 109.46571 * 195.95903 * 24 23 22 48 48 H 1.08999 * 109.46320 * 127.05536 * 25 24 23 49 49 H 1.08997 * 109.46784 * 7.07204 * 25 24 23 50 50 H 1.08998 * 109.47769 * 284.01438 * 26 25 24 51 51 H 1.09005 * 109.47250 * 164.01032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5768 0.0815 11 6 5.4212 -2.6551 -0.2861 12 6 5.5590 -2.5494 -1.7831 13 6 5.5382 -3.6926 -2.5605 14 6 5.6587 -3.5979 -3.9334 15 6 5.8121 -2.3554 -4.5310 16 8 5.9361 -2.2600 -5.8810 17 6 5.8385 -1.2103 -3.7483 18 6 5.7115 -1.3098 -2.3764 19 6 3.7722 -3.1371 1.4200 20 6 4.7136 -2.4658 2.4220 21 6 4.2231 -2.7398 3.8450 22 6 2.7066 -2.5484 3.9084 23 6 2.0327 -3.8971 4.1690 24 6 2.0363 -4.7251 2.8824 25 6 3.4378 -5.2899 2.6430 26 6 4.0430 -4.6429 1.3956 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.7345 -0.9203 29 1 3.8751 -0.6280 0.8564 30 1 5.9648 -1.8376 0.1874 31 1 5.8316 -3.6072 0.0502 32 1 5.4236 -4.6601 -2.0944 33 1 5.6380 -4.4908 -4.5407 34 1 6.8491 -2.3041 -6.1963 35 1 5.9582 -0.2419 -4.2112 36 1 5.7315 -0.4187 -1.7666 37 1 2.7386 -2.9587 1.7167 38 1 5.7197 -2.8674 2.3008 39 1 4.7277 -1.3906 2.2432 40 1 4.7057 -2.0479 4.5352 41 1 4.4719 -3.7637 4.1239 42 1 2.3518 -2.1420 2.9612 43 1 2.4610 -1.8575 4.7149 44 1 1.0050 -3.7333 4.4930 45 1 2.5782 -4.4316 4.9467 46 1 1.7513 -4.0919 2.0422 47 1 1.3251 -5.5457 2.9766 48 1 3.3749 -6.3685 2.4986 49 1 4.0683 -5.0752 3.5058 50 1 3.5914 -5.0790 0.5046 51 1 5.1187 -4.8184 1.3808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204093609.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:57 Heat of formation + Delta-G solvation = -14.289691 kcal Electronic energy + Delta-G solvation = -28360.903617 eV Core-core repulsion = 24839.197344 eV Total energy + Delta-G solvation = -3521.706273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88151 -39.22427 -37.01766 -35.56220 -32.66274 -32.43617 -31.50899 -30.74967 -30.05151 -27.60510 -25.71393 -25.50101 -23.93527 -22.59518 -21.66013 -21.39750 -20.56162 -20.14721 -18.28501 -18.22677 -16.73436 -16.04048 -15.65508 -15.49793 -15.17205 -14.69899 -14.27178 -14.14218 -13.83720 -13.78019 -13.48959 -13.35224 -13.19352 -12.94675 -12.80329 -12.40727 -12.23708 -11.87961 -11.70651 -11.57385 -11.46611 -11.25194 -10.97098 -10.85534 -10.77844 -10.67236 -10.60879 -10.33308 -10.24227 -10.06837 -9.99972 -9.81906 -9.40734 -9.29703 -9.22786 -8.69769 -8.52893 -8.20367 -7.29298 -6.02680 -3.98193 1.49183 1.63788 3.27080 3.35843 3.36275 3.86081 4.35163 4.43134 4.83414 4.96778 5.08475 5.17394 5.20533 5.24699 5.30313 5.32273 5.37560 5.53805 5.56749 5.58408 5.62311 5.65534 5.67932 5.83109 5.90017 5.95100 6.01975 6.10473 6.15743 6.22252 6.24468 6.27805 6.31369 6.33841 6.41420 6.49607 6.54695 6.56804 6.58963 6.65064 6.68035 6.73515 6.82168 6.92731 6.94377 7.06258 7.07948 7.19750 7.68106 7.77874 7.94951 8.10527 8.69634 9.07660 9.60160 11.10556 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.005324 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.090046 B = 5257.625115 C = 7019.519307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.287 1.287 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.156 3.844 10 N -0.513 5.513 11 C 0.086 3.914 12 C -0.064 4.064 13 C -0.086 4.086 14 C -0.147 4.147 15 C 0.091 3.909 16 O -0.501 6.501 17 C -0.145 4.145 18 C -0.092 4.092 19 C 0.071 3.929 20 C -0.151 4.151 21 C -0.117 4.117 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.110 4.110 27 H 0.262 0.738 28 H 0.030 0.970 29 H -0.012 1.012 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.382 0.618 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.610 -8.061 1.615 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.212 1.212 7 C -0.539 4.539 8 H 0.098 0.902 9 C 0.029 3.971 10 N -0.235 5.235 11 C -0.042 4.042 12 C -0.065 4.065 13 C -0.104 4.104 14 C -0.166 4.166 15 C 0.046 3.954 16 O -0.310 6.310 17 C -0.163 4.163 18 C -0.111 4.111 19 C -0.036 4.036 20 C -0.190 4.190 21 C -0.155 4.155 22 C -0.174 4.174 23 C -0.150 4.150 24 C -0.170 4.170 25 C -0.159 4.159 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.005 0.995 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.237 0.763 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.557 -8.168 1.282 15.035 hybrid contribution 1.295 1.600 0.457 2.109 sum 13.852 -6.567 1.740 15.428 Atomic orbital electron populations 1.69885 1.06017 1.26631 1.51307 1.24856 0.94634 0.98531 0.95088 0.86975 0.80484 0.84637 0.78353 1.20418 1.19325 1.21249 1.20982 0.88676 0.94497 1.49766 0.90197 1.20314 0.97162 0.84297 0.95281 1.62240 1.12703 1.23086 1.25502 1.21066 0.91977 1.00630 0.90563 1.19896 0.97563 0.92767 0.96240 1.20828 0.98550 0.98424 0.92630 1.21305 1.03299 0.96823 0.95144 1.18418 1.02083 0.92506 0.82346 1.84855 1.31822 1.95892 1.18446 1.21318 1.02938 0.98150 0.93908 1.20981 0.98502 0.97505 0.94087 1.22334 1.02128 0.92491 0.86665 1.22325 0.99079 1.01539 0.96035 1.21742 0.96125 1.01144 0.96515 1.21904 0.95028 0.96986 1.03504 1.21638 1.00136 0.96118 0.97125 1.21866 0.96526 0.99573 0.99069 1.21804 0.96797 0.98816 0.98504 1.21683 0.99341 0.95777 0.98003 0.92786 0.95169 0.99455 0.94786 0.90783 0.85837 0.85945 0.76306 0.85956 0.86029 0.85837 0.93052 0.91870 0.93326 0.91436 0.88893 0.92970 0.92542 0.92766 0.89511 0.92913 0.92961 0.91486 0.91299 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.42 27.40 -169.99 -4.66 16.76 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.35 6.64 56.52 0.38 -5.98 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.50 -13.76 8.95 -34.44 -0.31 -14.07 16 8 H 0.08 2.41 7.92 -52.49 -0.42 2.00 16 9 C 0.16 3.60 3.51 -4.98 -0.02 3.59 16 10 N -0.51 -10.00 4.31 -229.51 -0.99 -10.99 16 11 C 0.09 1.40 3.86 -4.98 -0.02 1.38 16 12 C -0.06 -1.05 5.18 -104.60 -0.54 -1.59 16 13 C -0.09 -1.28 9.69 -39.61 -0.38 -1.66 16 14 C -0.15 -2.10 9.99 -39.43 -0.39 -2.50 16 15 C 0.09 1.34 6.70 -39.22 -0.26 1.08 16 16 O -0.50 -6.49 13.50 -19.43 -0.26 -6.76 16 17 C -0.14 -2.24 9.99 -39.44 -0.39 -2.63 16 18 C -0.09 -1.53 8.28 -39.61 -0.33 -1.86 16 19 C 0.07 1.23 1.49 -67.70 -0.10 1.13 16 20 C -0.15 -2.36 4.04 -26.73 -0.11 -2.47 16 21 C -0.12 -1.65 5.48 -26.75 -0.15 -1.80 16 22 C -0.14 -2.13 5.47 -26.74 -0.15 -2.27 16 23 C -0.11 -1.55 5.59 -26.72 -0.15 -1.70 16 24 C -0.13 -1.91 5.47 -26.73 -0.15 -2.06 16 25 C -0.12 -1.57 5.48 -26.74 -0.15 -1.72 16 26 C -0.11 -1.60 4.59 -26.73 -0.12 -1.72 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 28 H 0.03 0.73 4.89 -51.93 -0.25 0.47 16 29 H -0.01 -0.28 5.39 -51.93 -0.28 -0.56 16 30 H 0.03 0.55 7.55 -51.93 -0.39 0.16 16 31 H 0.07 1.06 6.15 -51.93 -0.32 0.74 16 32 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.38 2.83 9.06 45.56 0.41 3.24 16 35 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.12 2.02 7.47 -52.49 -0.39 1.63 16 37 H 0.12 2.44 1.84 -51.93 -0.10 2.35 16 38 H 0.05 0.73 7.35 -51.93 -0.38 0.34 16 39 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.85 4.69 -51.93 -0.24 0.61 16 42 H 0.09 1.78 5.47 -51.93 -0.28 1.50 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.66 7.47 -51.93 -0.39 0.27 16 46 H 0.09 1.52 5.47 -51.93 -0.28 1.24 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.81 4.69 -51.93 -0.24 0.57 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.05 0.65 6.66 -51.93 -0.35 0.31 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -30.86 368.83 -10.58 -41.44 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.19 Total: 9.40 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -3.81 Total: -28.97 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.22 Total: -37.43 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.26 Total: -6.76 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.66 Total: 16.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.86 -10.58 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204093609.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.149 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds