Wall clock time and date at job start Tue Mar 31 2020 11:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.53684 * 2 1 4 4 C 1.53042 * 109.50342 * 239.89833 * 2 1 3 5 5 N 1.46839 * 109.52473 * 180.87891 * 4 2 1 6 6 C 1.46905 * 111.00233 * 185.84259 * 5 4 2 7 7 C 1.50692 * 109.47103 * 190.00050 * 6 5 4 8 8 C 1.38234 * 120.00286 * 269.72279 * 7 6 5 9 9 C 1.38235 * 120.00308 * 179.74764 * 8 7 6 10 10 C 1.38231 * 119.99644 * 0.54883 * 9 8 7 11 11 C 1.38234 * 120.00429 * 359.70701 * 10 9 8 12 12 C 1.38233 * 120.00230 * 90.00013 * 7 6 5 13 13 C 1.46847 * 111.20019 * 61.74341 * 5 4 2 14 14 C 1.53045 * 109.57555 * 298.29343 * 13 5 4 15 15 C 1.53118 * 109.27813 * 59.07865 * 14 13 5 16 16 H 1.08999 * 109.52014 * 62.37578 * 15 14 13 17 17 O 1.42899 * 109.52550 * 182.50726 * 15 14 13 18 18 C 1.42905 * 113.99778 * 269.87636 * 17 15 14 19 19 C 1.52999 * 109.46728 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.46573 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00167 * 359.72054 * 20 19 18 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47487 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47233 * 120.00158 * 24 22 20 27 27 H 1.48508 * 109.46883 * 239.99963 * 24 22 20 28 28 H 1.08997 * 109.47044 * 299.89995 * 1 2 3 29 29 H 1.09004 * 109.47624 * 59.90173 * 1 2 3 30 30 H 1.09009 * 109.47396 * 179.90305 * 1 2 3 31 31 H 1.09001 * 109.47321 * 180.10337 * 3 2 1 32 32 H 1.09010 * 109.46457 * 300.09673 * 3 2 1 33 33 H 1.08990 * 109.47206 * 60.09723 * 3 2 1 34 34 H 1.08996 * 109.46268 * 300.90303 * 4 2 1 35 35 H 1.09006 * 109.45894 * 60.87319 * 4 2 1 36 36 H 1.09001 * 109.46608 * 310.00003 * 6 5 4 37 37 H 1.08994 * 109.47098 * 69.99654 * 6 5 4 38 38 H 1.08011 * 119.99750 * 0.02562 * 8 7 6 39 39 H 1.08005 * 120.00189 * 180.27412 * 9 8 7 40 40 H 1.08004 * 120.00053 * 179.72337 * 10 9 8 41 41 H 1.08000 * 120.00222 * 179.97438 * 11 10 9 42 42 H 1.08008 * 119.99995 * 0.02562 * 12 7 6 43 43 H 1.09003 * 109.46150 * 58.27378 * 13 5 4 44 44 H 1.09002 * 109.46290 * 178.25070 * 13 5 4 45 45 H 1.09006 * 109.45012 * 299.17145 * 14 13 5 46 46 H 1.08994 * 109.55628 * 179.05389 * 14 13 5 47 47 H 1.09000 * 109.47187 * 59.99767 * 18 17 15 48 48 H 1.09001 * 109.46558 * 299.99719 * 18 17 15 49 49 H 1.09000 * 109.47486 * 59.99938 * 19 18 17 50 50 H 1.09001 * 109.47362 * 299.99215 * 19 18 17 51 51 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2481 5 7 3.5091 -0.7422 -1.2379 6 6 4.0372 -1.3060 -2.4875 7 6 5.5197 -1.5371 -2.3473 8 6 6.4108 -0.5402 -2.6978 9 6 7.7706 -0.7503 -2.5643 10 6 8.2395 -1.9614 -2.0910 11 6 7.3486 -2.9603 -1.7455 12 6 5.9887 -2.7480 -1.8737 13 6 4.0229 -1.4730 -0.0725 14 6 3.5711 -0.7734 1.2115 15 6 2.0412 -0.7238 1.2487 16 1 1.6443 -1.7388 1.2695 17 8 1.6144 -0.0200 2.4169 18 6 1.4181 -0.8556 3.5595 19 6 0.9640 -0.0007 4.7444 20 6 0.7564 -0.8819 5.9491 21 1 0.9264 -1.9459 5.8757 22 6 0.3442 -0.3304 7.1437 23 7 0.1318 0.9645 7.2317 24 14 0.0875 -1.4226 8.6372 25 1 0.3911 -2.8312 8.2785 26 1 0.9903 -0.9845 9.7319 27 1 -1.3236 -1.3203 9.0886 28 1 -0.3633 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0017 31 1 3.1316 1.4407 -0.0019 32 1 1.6774 1.9566 -0.8892 33 1 1.6803 1.9556 0.8908 34 1 1.6646 -1.7465 -1.2544 35 1 1.6906 -0.2022 -2.1390 36 1 3.5400 -2.2530 -2.6974 37 1 3.8537 -0.6101 -3.3061 38 1 6.0445 0.4046 -3.0718 39 1 8.4667 0.0302 -2.8340 40 1 9.3021 -2.1272 -1.9909 41 1 7.7151 -3.9067 -1.3761 42 1 5.2926 -3.5288 -1.6044 43 1 3.6374 -2.4926 -0.0843 44 1 5.1121 -1.4961 -0.1094 45 1 3.9687 0.2414 1.2311 46 1 3.9385 -1.3255 2.0765 47 1 2.3539 -1.3556 3.8091 48 1 0.6554 -1.6019 3.3370 49 1 0.0281 0.4990 4.4944 50 1 1.7263 0.7459 4.9670 51 1 -0.1585 1.3523 8.0720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:37 Heat of formation + Delta-G solvation = -35.213589 kcal Electronic energy + Delta-G solvation = -27094.437822 eV Core-core repulsion = 23571.824220 eV Total energy + Delta-G solvation = -3522.613601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33477 -39.18046 -36.85589 -34.74809 -33.10675 -32.15285 -31.13720 -30.96208 -29.60201 -26.98234 -26.56562 -25.95298 -24.54500 -22.88304 -22.74040 -22.00238 -20.81356 -20.65797 -18.41137 -16.96852 -16.69575 -16.08655 -15.69128 -15.60154 -15.31568 -14.93729 -14.80159 -14.61368 -14.41532 -14.00328 -13.64998 -13.37020 -13.12989 -13.05734 -12.93098 -12.63958 -12.30113 -12.18780 -11.85081 -11.73644 -11.58616 -11.55743 -11.34456 -11.18801 -11.05343 -11.01821 -10.89276 -10.68552 -10.57827 -10.34062 -10.03714 -9.96500 -9.41509 -9.15995 -9.13318 -9.04310 -8.71230 -8.35070 -8.33569 -6.01813 -4.05082 1.07792 1.17695 3.30387 3.37433 3.41344 3.44311 3.95257 4.24929 4.45134 4.50330 4.60337 4.74065 4.78306 4.85502 4.94757 5.04012 5.11000 5.23483 5.25527 5.33476 5.34313 5.40734 5.43447 5.47589 5.51111 5.61439 5.71171 5.75307 5.78596 5.81471 5.93720 6.01280 6.02095 6.17758 6.21781 6.24721 6.28292 6.30584 6.32124 6.37625 6.42611 6.49012 6.56645 6.75044 6.76286 6.92382 6.98472 7.00601 7.59940 7.82552 7.87449 8.16922 8.38996 9.01889 9.58535 11.09874 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.002655 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.807571 B =10544.912479 C =11544.767299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.126 4.126 4 C 0.068 3.932 5 N -0.528 5.528 6 C 0.093 3.907 7 C -0.081 4.081 8 C -0.099 4.099 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.114 4.114 13 C 0.056 3.944 14 C -0.140 4.140 15 C 0.100 3.900 16 H 0.047 0.953 17 O -0.377 6.377 18 C 0.070 3.930 19 C 0.027 3.973 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.059 3.941 23 N -0.891 5.891 24 Si 0.895 3.105 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.028 0.972 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.023 0.977 50 H 0.024 0.976 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.510 -5.278 -23.823 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 C -0.183 4.183 4 C -0.059 4.059 5 N -0.252 5.252 6 C -0.034 4.034 7 C -0.081 4.081 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.132 4.132 13 C -0.071 4.071 14 C -0.178 4.178 15 C 0.041 3.959 16 H 0.065 0.935 17 O -0.296 6.296 18 C -0.006 4.006 19 C -0.011 4.011 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.143 4.143 23 N -0.530 5.530 24 Si 0.722 3.278 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.042 0.958 50 H 0.042 0.958 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.566 -4.461 -23.657 26.708 hybrid contribution -0.350 -1.787 0.906 2.033 sum 11.216 -6.248 -22.751 26.124 Atomic orbital electron populations 1.21797 0.93991 1.01454 1.02463 1.20608 0.95465 0.97000 0.92443 1.21675 1.01739 0.93840 1.01067 1.22171 0.86541 0.98706 0.98515 1.62049 1.08030 1.53637 1.01456 1.21074 0.90544 0.98593 0.93178 1.19761 0.95162 0.94049 0.99120 1.21045 0.92843 0.98560 0.99285 1.21170 0.95616 0.97318 0.99839 1.21161 0.99632 0.93804 0.99389 1.21121 0.93248 0.99301 1.00294 1.21096 0.95708 0.96940 0.99505 1.22185 1.00485 0.94542 0.89937 1.22143 0.96996 1.02465 0.96234 1.21960 0.92772 0.94554 0.86636 0.93492 1.87961 1.87589 1.35325 1.18724 1.22875 0.97670 0.94021 0.86027 1.19049 0.97245 0.95296 0.89461 1.21099 1.45994 0.94010 0.94943 0.92624 1.24992 0.95395 0.95027 0.98889 1.69991 1.46356 1.10510 1.26113 0.86496 0.77812 0.80697 0.82753 1.19739 1.20910 1.20931 0.90925 0.92977 0.93352 0.91633 0.93812 0.91959 0.94986 0.90416 0.94116 0.89821 0.85837 0.86099 0.86241 0.86148 0.86408 0.95334 0.90003 0.90008 0.91400 0.94994 0.95040 0.95845 0.95788 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.36 37.16 0.31 -1.52 16 2 C -0.05 -0.73 0.60 -154.43 -0.09 -0.82 16 3 C -0.13 -1.74 7.87 37.16 0.29 -1.44 16 4 C 0.07 0.76 4.14 -3.84 -0.02 0.74 16 5 N -0.53 -5.78 4.08 -236.11 -0.96 -6.74 16 6 C 0.09 0.85 5.43 -4.98 -0.03 0.82 16 7 C -0.08 -0.75 4.12 -104.63 -0.43 -1.18 16 8 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 9 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 10 C -0.12 -1.00 10.05 -39.59 -0.40 -1.39 16 11 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 12 C -0.11 -1.03 7.79 -39.58 -0.31 -1.34 16 13 C 0.06 0.67 4.57 -3.83 -0.02 0.65 16 14 C -0.14 -2.03 5.36 -26.65 -0.14 -2.17 16 15 C 0.10 1.57 1.76 -26.61 -0.05 1.52 16 16 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 17 O -0.38 -7.55 8.67 -35.23 -0.31 -7.85 16 18 C 0.07 1.55 5.69 37.16 0.21 1.76 16 19 C 0.03 0.72 5.34 -27.88 -0.15 0.57 16 20 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 24 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 28 H 0.07 1.13 7.76 -51.93 -0.40 0.72 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.92 6.02 -51.93 -0.31 0.61 16 32 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.99 7.63 -51.93 -0.40 0.60 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.04 0.35 8.02 -51.93 -0.42 -0.06 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.98 5.64 -51.93 -0.29 0.68 16 45 H 0.08 1.26 6.59 -51.93 -0.34 0.92 16 46 H 0.07 1.02 7.95 -51.93 -0.41 0.60 16 47 H 0.03 0.69 7.95 -51.93 -0.41 0.27 16 48 H 0.03 0.68 8.09 -51.93 -0.42 0.26 16 49 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -30.77 395.33 -11.27 -42.04 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -9.27 Total: -2.07 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.41 Total: -21.66 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.23 Total: -33.15 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.31 Total: -7.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.77 -11.27 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.830 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds