Wall clock time and date at job start Tue Mar 31 2020 11:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.53684 * 2 1 4 4 C 1.53042 * 109.50342 * 239.89833 * 2 1 3 5 5 N 1.46839 * 109.52473 * 180.87891 * 4 2 1 6 6 C 1.46905 * 111.00233 * 185.84259 * 5 4 2 7 7 C 1.50692 * 109.47103 * 190.00050 * 6 5 4 8 8 C 1.38234 * 120.00286 * 269.72279 * 7 6 5 9 9 C 1.38235 * 120.00308 * 179.74764 * 8 7 6 10 10 C 1.38231 * 119.99644 * 0.54883 * 9 8 7 11 11 C 1.38234 * 120.00429 * 359.70701 * 10 9 8 12 12 C 1.38233 * 120.00230 * 90.00013 * 7 6 5 13 13 C 1.46847 * 111.20019 * 61.74341 * 5 4 2 14 14 C 1.53045 * 109.57555 * 298.29343 * 13 5 4 15 15 C 1.53118 * 109.27813 * 59.07865 * 14 13 5 16 16 H 1.08999 * 109.52014 * 62.37578 * 15 14 13 17 17 O 1.42899 * 109.52550 * 182.50726 * 15 14 13 18 18 C 1.42905 * 113.99778 * 269.87636 * 17 15 14 19 19 C 1.52999 * 109.46728 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.46573 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00167 * 359.72054 * 20 19 18 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47487 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47233 * 120.00158 * 24 22 20 27 27 H 1.48508 * 109.46883 * 239.99963 * 24 22 20 28 28 H 1.08997 * 109.47044 * 299.89995 * 1 2 3 29 29 H 1.09004 * 109.47624 * 59.90173 * 1 2 3 30 30 H 1.09009 * 109.47396 * 179.90305 * 1 2 3 31 31 H 1.09001 * 109.47321 * 180.10337 * 3 2 1 32 32 H 1.09010 * 109.46457 * 300.09673 * 3 2 1 33 33 H 1.08990 * 109.47206 * 60.09723 * 3 2 1 34 34 H 1.08996 * 109.46268 * 300.90303 * 4 2 1 35 35 H 1.09006 * 109.45894 * 60.87319 * 4 2 1 36 36 H 1.09001 * 109.46608 * 310.00003 * 6 5 4 37 37 H 1.08994 * 109.47098 * 69.99654 * 6 5 4 38 38 H 1.08011 * 119.99750 * 0.02562 * 8 7 6 39 39 H 1.08005 * 120.00189 * 180.27412 * 9 8 7 40 40 H 1.08004 * 120.00053 * 179.72337 * 10 9 8 41 41 H 1.08000 * 120.00222 * 179.97438 * 11 10 9 42 42 H 1.08008 * 119.99995 * 0.02562 * 12 7 6 43 43 H 1.09003 * 109.46150 * 58.27378 * 13 5 4 44 44 H 1.09002 * 109.46290 * 178.25070 * 13 5 4 45 45 H 1.09006 * 109.45012 * 299.17145 * 14 13 5 46 46 H 1.08994 * 109.55628 * 179.05389 * 14 13 5 47 47 H 1.09000 * 109.47187 * 59.99767 * 18 17 15 48 48 H 1.09001 * 109.46558 * 299.99719 * 18 17 15 49 49 H 1.09000 * 109.47486 * 59.99938 * 19 18 17 50 50 H 1.09001 * 109.47362 * 299.99215 * 19 18 17 51 51 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2481 5 7 3.5091 -0.7422 -1.2379 6 6 4.0372 -1.3060 -2.4875 7 6 5.5197 -1.5371 -2.3473 8 6 6.4108 -0.5402 -2.6978 9 6 7.7706 -0.7503 -2.5643 10 6 8.2395 -1.9614 -2.0910 11 6 7.3486 -2.9603 -1.7455 12 6 5.9887 -2.7480 -1.8737 13 6 4.0229 -1.4730 -0.0725 14 6 3.5711 -0.7734 1.2115 15 6 2.0412 -0.7238 1.2487 16 1 1.6443 -1.7388 1.2695 17 8 1.6144 -0.0200 2.4169 18 6 1.4181 -0.8556 3.5595 19 6 0.9640 -0.0007 4.7444 20 6 0.7564 -0.8819 5.9491 21 1 0.9264 -1.9459 5.8757 22 6 0.3442 -0.3304 7.1437 23 7 0.1318 0.9645 7.2317 24 14 0.0875 -1.4226 8.6372 25 1 0.3911 -2.8312 8.2785 26 1 0.9903 -0.9845 9.7319 27 1 -1.3236 -1.3203 9.0886 28 1 -0.3633 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0017 31 1 3.1316 1.4407 -0.0019 32 1 1.6774 1.9566 -0.8892 33 1 1.6803 1.9556 0.8908 34 1 1.6646 -1.7465 -1.2544 35 1 1.6906 -0.2022 -2.1390 36 1 3.5400 -2.2530 -2.6974 37 1 3.8537 -0.6101 -3.3061 38 1 6.0445 0.4046 -3.0718 39 1 8.4667 0.0302 -2.8340 40 1 9.3021 -2.1272 -1.9909 41 1 7.7151 -3.9067 -1.3761 42 1 5.2926 -3.5288 -1.6044 43 1 3.6374 -2.4926 -0.0843 44 1 5.1121 -1.4961 -0.1094 45 1 3.9687 0.2414 1.2311 46 1 3.9385 -1.3255 2.0765 47 1 2.3539 -1.3556 3.8091 48 1 0.6554 -1.6019 3.3370 49 1 0.0281 0.4990 4.4944 50 1 1.7263 0.7459 4.9670 51 1 -0.1585 1.3523 8.0720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:37 Heat of formation + Delta-G solvation = -51.010294 kcal Electronic energy + Delta-G solvation = -27095.122818 eV Core-core repulsion = 23571.824220 eV Total energy + Delta-G solvation = -3523.298598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28718 -40.02637 -38.18164 -35.92761 -35.13879 -33.15824 -32.16033 -31.74993 -31.32591 -28.09673 -27.42966 -27.20560 -26.33817 -23.88069 -23.52934 -22.92559 -22.74729 -21.44885 -19.57067 -18.66711 -17.60696 -17.39187 -16.88317 -16.62500 -16.50737 -16.32927 -16.12947 -15.72668 -15.43819 -15.08986 -14.74892 -14.44019 -14.30063 -14.20781 -14.03073 -13.81894 -13.49992 -13.32081 -13.15085 -12.88609 -12.80375 -12.75267 -12.69204 -12.59110 -12.49083 -12.21593 -12.13987 -11.86123 -11.82538 -11.67156 -11.48300 -11.42420 -11.24398 -11.13158 -10.63799 -10.22420 -9.76093 -9.68542 -9.17096 -8.24704 -6.37861 0.43829 0.54541 1.39472 1.40669 1.54105 2.36460 2.73192 2.90245 3.09012 3.17432 3.64992 3.73935 3.87754 3.96720 4.03187 4.16068 4.19436 4.24723 4.29330 4.35053 4.40185 4.41724 4.44813 4.47655 4.62285 4.64993 4.66313 4.75160 4.80229 4.83483 4.88665 4.91002 4.93803 4.99109 5.07187 5.14694 5.16261 5.19859 5.21824 5.33914 5.36722 5.45732 5.57479 5.58562 5.61071 5.66760 5.72989 5.73827 6.09274 6.10197 6.12159 6.18234 6.50860 6.78289 7.31942 8.88593 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.002655 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.807571 B =10544.912479 C =11544.767299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C -0.119 4.119 4 C 0.075 3.925 5 N -0.534 5.534 6 C 0.097 3.903 7 C -0.092 4.092 8 C -0.110 4.110 9 C -0.130 4.130 10 C -0.129 4.129 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.068 3.932 14 C -0.137 4.137 15 C 0.092 3.908 16 H 0.050 0.950 17 O -0.395 6.395 18 C 0.089 3.911 19 C 0.032 3.968 20 C -0.544 4.544 21 H 0.065 0.935 22 C 0.000 4.000 23 N -0.932 5.932 24 Si 0.974 3.026 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.034 0.966 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.039 0.961 49 H -0.007 1.007 50 H -0.008 1.008 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.028 -7.015 -25.151 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C -0.176 4.176 4 C -0.053 4.053 5 N -0.258 5.258 6 C -0.030 4.030 7 C -0.092 4.092 8 C -0.129 4.129 9 C -0.148 4.148 10 C -0.147 4.147 11 C -0.149 4.149 12 C -0.143 4.143 13 C -0.059 4.059 14 C -0.175 4.175 15 C 0.034 3.966 16 H 0.068 0.932 17 O -0.314 6.314 18 C 0.013 3.987 19 C -0.005 4.005 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.198 4.198 23 N -0.571 5.571 24 Si 0.797 3.203 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.201 1.201 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.052 0.948 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.011 0.989 50 H 0.010 0.990 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.093 -6.205 -25.013 28.467 hybrid contribution -0.462 -1.179 1.254 1.782 sum 11.631 -7.384 -23.759 27.465 Atomic orbital electron populations 1.21761 0.93806 1.01792 1.02064 1.20637 0.95646 0.96665 0.92422 1.21593 1.01342 0.94190 1.00501 1.22114 0.86592 0.98961 0.97605 1.62007 1.07993 1.53940 1.01900 1.21101 0.90365 0.99226 0.92271 1.19857 0.95382 0.94332 0.99665 1.21238 0.93260 0.98883 0.99502 1.21443 0.95826 0.97926 0.99616 1.21455 1.00662 0.93684 0.98921 1.21385 0.93252 1.00098 1.00198 1.21249 0.96192 0.97127 0.99719 1.22011 1.00493 0.94400 0.89042 1.22077 0.95913 1.01869 0.97616 1.22279 0.93728 0.94718 0.85864 0.93218 1.87934 1.88059 1.35972 1.19477 1.22422 0.97901 0.92982 0.85431 1.18890 0.94814 0.95083 0.91738 1.21490 1.46315 0.94628 0.95788 0.91663 1.26043 0.94668 0.96569 1.02527 1.70134 1.46998 1.12685 1.27331 0.85273 0.77975 0.78968 0.78053 1.18278 1.20171 1.20138 0.94132 0.90531 0.92658 0.92090 0.91718 0.95088 0.94258 0.88275 0.93306 0.88558 0.85175 0.84542 0.84521 0.84760 0.85920 0.94752 0.89895 0.91414 0.92403 0.94366 0.94256 0.98868 0.98986 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.36 71.98 0.60 -2.87 16 2 C -0.05 -1.37 0.60 -52.13 -0.03 -1.40 16 3 C -0.12 -3.25 7.87 71.98 0.57 -2.68 16 4 C 0.07 1.46 4.14 86.33 0.36 1.82 16 5 N -0.53 -10.58 4.08 -900.92 -3.68 -14.26 16 6 C 0.10 1.52 5.43 85.55 0.46 1.98 16 7 C -0.09 -1.56 4.12 -19.87 -0.08 -1.64 16 8 C -0.11 -1.81 9.70 22.27 0.22 -1.60 16 9 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 10 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 11 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 12 C -0.12 -2.06 7.79 22.27 0.17 -1.88 16 13 C 0.07 1.54 4.57 86.33 0.39 1.93 16 14 C -0.14 -3.94 5.36 30.65 0.16 -3.78 16 15 C 0.09 2.89 1.76 30.67 0.05 2.94 16 16 H 0.05 1.54 7.79 -2.39 -0.02 1.52 16 17 O -0.39 -16.40 8.67 -148.98 -1.29 -17.69 16 18 C 0.09 4.04 5.69 71.98 0.41 4.45 16 19 C 0.03 1.82 5.34 29.85 0.16 1.97 16 20 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 21 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 22 C 0.00 0.00 5.46 84.66 0.46 0.47 16 23 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 24 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 H 0.04 1.28 7.76 -2.39 -0.02 1.26 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 1.71 6.02 -2.39 -0.01 1.69 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.03 1.02 7.63 -2.39 -0.02 1.00 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 1.57 8.12 -2.38 -0.02 1.55 16 36 H 0.05 0.70 8.02 -2.39 -0.02 0.68 16 37 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 38 H 0.13 1.87 8.06 -2.90 -0.02 1.85 16 39 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.12 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 1.88 5.64 -2.39 -0.01 1.87 16 45 H 0.07 2.13 6.59 -2.38 -0.02 2.12 16 46 H 0.06 1.75 7.95 -2.39 -0.02 1.73 16 47 H 0.04 1.67 7.95 -2.39 -0.02 1.65 16 48 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 49 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 51 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -67.87 395.33 3.02 -64.85 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.86 Total: 15.47 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.82 Total: -37.15 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -3.39 Total: -72.15 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.29 Total: -17.69 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.87 3.02 -64.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -67.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds