Wall clock time and date at job start Tue Mar 31 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.48861 * 2 1 4 4 C 1.53095 * 109.47571 * 120.02531 * 2 1 3 5 5 C 1.53183 * 109.15860 * 177.59199 * 4 2 1 6 6 H 1.09004 * 109.54323 * 62.97786 * 5 4 2 7 7 C 1.53000 * 109.54122 * 183.15685 * 5 4 2 8 8 N 1.46904 * 109.46912 * 184.85588 * 7 5 4 9 9 C 1.46902 * 110.99857 * 200.33602 * 8 7 5 10 10 C 1.50693 * 109.47077 * 63.38057 * 9 8 7 11 11 H 1.08002 * 120.00063 * 5.24431 * 10 9 8 12 12 C 1.37883 * 120.00155 * 185.25071 * 10 9 8 13 13 N 1.31515 * 119.99696 * 354.90164 * 12 10 9 14 14 Si 1.86796 * 120.00064 * 174.90093 * 12 10 9 15 15 H 1.48502 * 109.47106 * 94.99325 * 14 12 10 16 16 H 1.48497 * 109.47120 * 214.99288 * 14 12 10 17 17 H 1.48499 * 109.47264 * 334.99651 * 14 12 10 18 18 C 1.46900 * 111.00078 * 76.38702 * 8 7 5 19 19 C 1.50695 * 109.47143 * 189.99837 * 18 8 7 20 20 C 1.38238 * 119.99740 * 89.99783 * 19 18 8 21 21 C 1.38236 * 119.99850 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99895 * 359.96144 * 21 20 19 23 23 C 1.38233 * 119.99962 * 0.27147 * 22 21 20 24 24 C 1.38227 * 120.00012 * 269.97103 * 19 18 8 25 25 C 1.53180 * 109.03823 * 303.02022 * 5 4 2 26 26 C 1.53099 * 109.15944 * 56.98207 * 25 5 4 27 27 O 1.42895 * 109.48090 * 239.97039 * 2 1 3 28 28 H 1.09006 * 109.47439 * 299.97397 * 1 2 3 29 29 H 1.09004 * 109.47050 * 59.97057 * 1 2 3 30 30 H 1.08995 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46881 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47643 * 300.02568 * 3 2 1 33 33 H 1.09001 * 109.47042 * 60.02882 * 3 2 1 34 34 H 1.09004 * 109.52242 * 57.69243 * 4 2 1 35 35 H 1.09001 * 109.57765 * 297.52941 * 4 2 1 36 36 H 1.08998 * 109.47671 * 64.85532 * 7 5 4 37 37 H 1.08999 * 109.47062 * 304.85455 * 7 5 4 38 38 H 1.08996 * 109.47152 * 183.38460 * 9 8 7 39 39 H 1.09002 * 109.46925 * 303.38392 * 9 8 7 40 40 H 0.96996 * 119.99338 * 180.02562 * 13 12 10 41 41 H 1.08995 * 109.47542 * 69.99412 * 18 8 7 42 42 H 1.09003 * 109.46716 * 309.99773 * 18 8 7 43 43 H 1.08001 * 120.00309 * 359.97438 * 20 19 18 44 44 H 1.07994 * 120.00257 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.99944 * 180.02562 * 22 21 20 46 46 H 1.08006 * 119.99906 * 179.73407 * 23 22 21 47 47 H 1.08001 * 120.00195 * 0.02562 * 24 19 18 48 48 H 1.08995 * 109.52265 * 176.88961 * 25 5 4 49 49 H 1.09005 * 109.52153 * 297.07736 * 25 5 4 50 50 H 1.08999 * 109.47552 * 182.41013 * 26 25 5 51 51 H 1.09000 * 109.49043 * 62.38251 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0404 -0.7222 1.2497 5 6 3.5710 -0.7708 1.2123 6 1 3.9689 0.2435 1.2425 7 6 4.0876 -1.5594 2.4173 8 7 5.5554 -1.5069 2.4442 9 6 6.1067 -2.6021 3.2533 10 6 5.7509 -3.9225 2.6204 11 1 5.2471 -3.9453 1.6653 12 6 6.0684 -5.1017 3.2605 13 7 6.7695 -5.0778 4.3730 14 14 5.5028 -6.7331 2.5478 15 1 6.5853 -7.3092 1.7101 16 1 5.1800 -7.6708 3.6530 17 1 4.2936 -6.5162 1.7135 18 6 6.0267 -0.2036 2.9314 19 6 7.5143 -0.0949 2.7160 20 6 8.0051 0.4289 1.5346 21 6 9.3696 0.5292 1.3373 22 6 10.2433 0.1064 2.3217 23 6 9.7524 -0.4218 3.5010 24 6 8.3879 -0.5183 3.7000 25 6 4.0176 -1.4601 -0.0807 26 6 3.4307 -0.7093 -1.2790 27 8 2.0065 -0.6742 -1.1663 28 1 -0.3634 0.5134 0.8902 29 1 -0.3633 0.5143 -0.8898 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1304 1.4420 -0.0005 32 1 1.6769 1.9565 -0.8897 33 1 1.6777 1.9561 0.8903 34 1 1.6442 -1.7375 1.2710 35 1 1.7147 -0.1852 2.1405 36 1 3.7626 -2.5969 2.3391 37 1 3.6916 -1.1228 3.3341 38 1 7.1910 -2.5047 3.3059 39 1 5.6886 -2.5568 4.2589 40 1 6.9932 -5.9074 4.8231 41 1 5.8059 -0.1117 3.9948 42 1 5.5213 0.5928 2.3852 43 1 7.3225 0.7598 0.7658 44 1 9.7531 0.9380 0.4142 45 1 11.3093 0.1852 2.1677 46 1 10.4351 -0.7561 4.2683 47 1 8.0044 -0.9275 4.6230 48 1 5.1058 -1.4498 -0.1419 49 1 3.6612 -2.4902 -0.0862 50 1 3.7100 -1.2203 -2.2003 51 1 3.8193 0.3090 -1.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207350331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:22 Heat of formation + Delta-G solvation = -49.153809 kcal Electronic energy + Delta-G solvation = -27927.472231 eV Core-core repulsion = 24404.254136 eV Total energy + Delta-G solvation = -3523.218095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06949 -40.20629 -38.20602 -35.12952 -34.55276 -34.29172 -32.26818 -31.69381 -29.76840 -29.02003 -28.15157 -27.17102 -25.78527 -24.17497 -23.45729 -22.96525 -22.03504 -20.95545 -20.03647 -18.50922 -17.62713 -17.12918 -16.95258 -16.61719 -16.39553 -16.04163 -15.89720 -15.67310 -15.31071 -15.16513 -14.81836 -14.52727 -14.19208 -13.93517 -13.87355 -13.65133 -13.41640 -13.32214 -13.06549 -12.98608 -12.89724 -12.73503 -12.67800 -12.53960 -12.46909 -12.42646 -12.07345 -11.94585 -11.82666 -11.72726 -11.58706 -11.26533 -11.19462 -10.82879 -10.57674 -10.22058 -9.69242 -9.56818 -8.94185 -8.20243 -6.26822 0.54040 0.60743 1.37006 1.37287 1.48997 2.38197 2.89211 2.93338 3.12901 3.41251 3.83457 3.91463 3.93542 3.97833 4.04769 4.08305 4.23350 4.23964 4.33151 4.40092 4.44624 4.49141 4.53655 4.65836 4.69375 4.70766 4.74521 4.79017 4.85141 4.87034 4.91417 4.96649 4.99004 5.06036 5.14240 5.18444 5.20061 5.24864 5.28890 5.31284 5.39131 5.44474 5.47023 5.61235 5.65291 5.67270 5.69387 5.84056 6.09691 6.22360 6.37625 6.45541 6.66718 6.89849 7.41207 8.90902 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008398 B = 0.005254 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.370279 B = 5328.111809 C = 7764.520155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.108 3.892 3 C -0.174 4.174 4 C -0.135 4.135 5 C -0.068 4.068 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.524 5.524 9 C 0.208 3.792 10 C -0.515 4.515 11 H 0.060 0.940 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.957 3.043 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.093 3.907 19 C -0.081 4.081 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.132 4.132 26 C 0.063 3.937 27 O -0.395 6.395 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.019 0.981 39 H -0.048 1.048 40 H 0.262 0.738 41 H 0.018 0.982 42 H 0.097 0.903 43 H 0.136 0.864 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.127 0.873 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.040 0.960 50 H 0.095 0.905 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 15.714 -8.319 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 C -0.231 4.231 4 C -0.173 4.173 5 C -0.087 4.087 6 H 0.099 0.901 7 C -0.058 4.058 8 N -0.248 5.248 9 C 0.082 3.918 10 C -0.553 4.553 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.782 3.218 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.034 4.034 19 C -0.082 4.082 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.170 4.170 26 C -0.013 4.013 27 O -0.315 6.315 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.037 0.963 39 H -0.030 1.030 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.115 0.885 43 H 0.154 0.846 44 H 0.167 0.833 45 H 0.163 0.837 46 H 0.145 0.855 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.114 0.886 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.419 15.458 -8.792 18.324 hybrid contribution -0.076 -1.440 1.531 2.104 sum -4.495 14.018 -7.261 16.414 Atomic orbital electron populations 1.21773 0.91612 1.02561 1.03340 1.21594 0.95347 0.91679 0.84455 1.22407 1.02008 0.95334 1.03388 1.22214 0.95111 1.01057 0.98934 1.21101 0.94571 0.99111 0.93883 0.90093 1.22030 0.87440 1.00150 0.96198 1.62050 1.07896 1.01615 1.53219 1.19416 0.94627 0.88851 0.88928 1.21430 1.37227 0.91199 1.05450 0.92221 1.25789 0.95269 1.02766 0.95485 1.70091 1.39441 1.28239 1.19441 0.85552 0.78874 0.79312 0.78032 1.20111 1.20752 1.19090 1.21091 0.91973 0.93014 0.97337 1.19852 0.95017 0.98374 0.94934 1.21175 0.96265 0.99192 0.95985 1.21452 0.92940 1.00034 0.99855 1.21416 1.00938 0.98842 0.93395 1.21307 0.94758 1.00159 0.99037 1.21112 0.94598 0.99635 0.99219 1.21983 1.01418 0.98783 0.94809 1.22637 0.80502 1.00096 0.98054 1.87907 1.21768 1.78036 1.43748 0.89517 0.91352 0.92826 0.92012 0.91395 0.90314 0.92829 0.90040 0.92594 0.96264 0.96347 1.03038 0.92926 0.96403 0.88532 0.84648 0.83300 0.83680 0.85465 0.88774 0.90959 0.94118 0.88649 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.85 71.98 0.64 -1.89 16 2 C 0.11 2.42 1.11 -10.76 -0.01 2.40 16 3 C -0.17 -3.13 7.93 71.98 0.57 -2.56 16 4 C -0.13 -3.46 4.21 30.69 0.13 -3.33 16 5 C -0.07 -1.99 2.02 -10.67 -0.02 -2.01 16 6 H 0.08 2.12 5.19 -2.38 -0.01 2.11 16 7 C 0.07 2.66 4.22 86.30 0.36 3.02 16 8 N -0.52 -21.95 3.97 -905.38 -3.59 -25.54 16 9 C 0.21 11.06 4.46 85.55 0.38 11.44 16 10 C -0.51 -29.34 8.07 25.60 0.21 -29.13 16 11 H 0.06 3.38 7.35 -2.91 -0.02 3.35 16 12 C 0.00 0.28 5.45 84.66 0.46 0.74 16 13 N -0.93 -56.71 13.29 21.45 0.29 -56.43 16 14 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 C 0.09 3.31 4.94 85.56 0.42 3.73 16 19 C -0.08 -2.87 4.90 -19.87 -0.10 -2.96 16 20 C -0.11 -3.18 9.70 22.27 0.22 -2.97 16 21 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 22 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 23 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 24 C -0.13 -4.75 7.87 22.27 0.18 -4.57 16 25 C -0.13 -4.07 5.27 30.69 0.16 -3.90 16 26 C 0.06 1.58 6.52 72.02 0.47 2.05 16 27 O -0.39 -10.59 10.24 -148.98 -1.52 -12.11 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.15 4.98 -2.39 -0.01 1.14 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 2.50 6.46 -2.39 -0.02 2.48 16 37 H 0.02 0.72 7.99 -2.39 -0.02 0.70 16 38 H 0.02 1.06 5.65 -2.39 -0.01 1.05 16 39 H -0.05 -2.84 8.14 -2.39 -0.02 -2.86 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 42 H 0.10 2.82 6.55 -2.39 -0.02 2.80 16 43 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 46 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.09 3.87 7.92 -2.91 -0.02 3.84 16 48 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 49 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.07 1.41 6.34 -2.39 -0.02 1.39 16 Total: -1.00 -66.92 390.36 2.81 -64.12 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.88 Total: 22.89 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 4.74 Total: -40.26 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.31 Total: -81.97 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.52 Total: -12.11 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -66.92 2.81 -64.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207350331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds