Wall clock time and date at job start Tue Mar 31 2020 11:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.49020 * 2 1 4 4 C 1.53089 * 109.48275 * 120.02790 * 2 1 3 5 5 C 1.53181 * 109.16157 * 62.37546 * 4 2 1 6 6 H 1.08993 * 109.54290 * 297.02279 * 5 4 2 7 7 C 1.53000 * 109.54295 * 176.84517 * 5 4 2 8 8 N 1.46900 * 109.47206 * 174.33283 * 7 5 4 9 9 C 1.46895 * 111.00022 * 160.49332 * 8 7 5 10 10 C 1.50696 * 109.47540 * 295.79959 * 9 8 7 11 11 H 1.08007 * 119.99859 * 355.21263 * 10 9 8 12 12 C 1.37873 * 120.00403 * 175.21120 * 10 9 8 13 13 N 1.31514 * 120.00201 * 5.13952 * 12 10 9 14 14 Si 1.86802 * 120.00062 * 185.14435 * 12 10 9 15 15 H 1.48501 * 109.47152 * 5.00099 * 14 12 10 16 16 H 1.48500 * 109.47339 * 125.00363 * 14 12 10 17 17 H 1.48503 * 109.46969 * 245.00254 * 14 12 10 18 18 C 1.46901 * 110.99969 * 284.44757 * 8 7 5 19 19 C 1.50701 * 109.47151 * 169.99451 * 18 8 7 20 20 C 1.38227 * 120.00341 * 269.72942 * 19 18 8 21 21 C 1.38239 * 119.99874 * 179.76300 * 20 19 18 22 22 C 1.38235 * 119.99976 * 0.51170 * 21 20 19 23 23 C 1.38228 * 119.99829 * 359.73978 * 22 21 20 24 24 C 1.38234 * 120.00385 * 0.02562 * 23 22 21 25 25 C 1.53177 * 109.03660 * 56.98278 * 5 4 2 26 26 C 1.53101 * 109.16209 * 303.01939 * 25 5 4 27 27 O 1.42899 * 109.41480 * 57.60880 * 26 25 5 28 28 H 1.09004 * 109.47720 * 299.96842 * 1 2 3 29 29 H 1.08996 * 109.47656 * 59.97076 * 1 2 3 30 30 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47394 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47162 * 300.03144 * 3 2 1 33 33 H 1.09006 * 109.47125 * 60.02668 * 3 2 1 34 34 H 1.08996 * 109.52252 * 302.47077 * 4 2 1 35 35 H 1.09002 * 109.57733 * 182.31542 * 4 2 1 36 36 H 1.09001 * 109.47183 * 54.33515 * 7 5 4 37 37 H 1.08994 * 109.47539 * 294.33477 * 7 5 4 38 38 H 1.08999 * 109.47004 * 55.80070 * 9 8 7 39 39 H 1.09005 * 109.47314 * 175.79943 * 9 8 7 40 40 H 0.96999 * 120.00639 * 179.97438 * 13 12 10 41 41 H 1.09004 * 109.46927 * 50.00414 * 18 8 7 42 42 H 1.08992 * 109.47606 * 289.99891 * 18 8 7 43 43 H 1.08004 * 120.00107 * 0.02562 * 20 19 18 44 44 H 1.07998 * 119.99979 * 180.23083 * 21 20 19 45 45 H 1.07999 * 119.99993 * 179.72215 * 22 21 20 46 46 H 1.08006 * 119.99820 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00422 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.52624 * 62.91948 * 25 5 4 49 49 H 1.08993 * 109.52443 * 183.11690 * 25 5 4 50 50 H 1.09001 * 109.47544 * 297.62776 * 26 25 5 51 51 H 1.08995 * 109.48872 * 177.59490 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 1.5757 -2.1813 1.2121 6 1 0.4868 -2.2180 1.2424 7 6 2.1468 -2.9315 2.4171 8 7 1.5926 -4.2914 2.4549 9 6 2.4262 -5.1768 3.2789 10 6 3.7861 -5.3196 2.6454 11 1 3.9844 -4.8676 1.6847 12 6 4.7771 -6.0270 3.2922 13 7 4.5080 -6.6619 4.4120 14 14 6.5023 -6.0836 2.5779 15 1 6.5751 -5.1968 1.3890 16 1 7.4765 -5.6227 3.5996 17 1 6.8267 -7.4762 2.1773 18 6 0.2036 -4.2807 2.9331 19 6 -0.4087 -5.6424 2.7282 20 6 -1.0665 -5.9340 1.5480 21 6 -1.6239 -7.1847 1.3582 22 6 -1.5325 -8.1403 2.3529 23 6 -0.8792 -7.8470 3.5351 24 6 -0.3176 -6.5979 3.7231 25 6 2.0765 -2.8322 -0.0809 26 6 1.5645 -2.0284 -1.2792 27 8 2.0065 -0.6742 -1.1665 28 1 -0.3635 0.5133 0.8903 29 1 -0.3634 0.5142 -0.8897 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1304 1.4420 -0.0005 32 1 1.6768 1.9565 -0.8897 33 1 1.6776 1.9562 0.8903 34 1 1.6420 -0.2357 2.1398 35 1 3.1297 -0.6873 1.2721 36 1 1.8795 -2.4046 3.3331 37 1 3.2321 -2.9837 2.3316 38 1 2.5330 -4.7507 4.2764 39 1 1.9544 -6.1568 3.3510 40 1 5.2051 -7.1599 4.8669 41 1 -0.3670 -3.5382 2.3752 42 1 0.1864 -4.0304 3.9937 43 1 -1.1414 -5.1861 0.7724 44 1 -2.1346 -7.4138 0.4346 45 1 -1.9719 -9.1160 2.2064 46 1 -0.8082 -8.5935 4.3125 47 1 0.1925 -6.3686 4.6470 48 1 3.1665 -2.8399 -0.0865 49 1 1.7037 -3.8546 -0.1422 50 1 0.4750 -2.0550 -1.2958 51 1 1.9529 -2.4620 -2.2006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207350332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:26 Heat of formation + Delta-G solvation = -33.817227 kcal Electronic energy + Delta-G solvation = -27922.642114 eV Core-core repulsion = 24400.089063 eV Total energy + Delta-G solvation = -3522.553051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.94681 -38.94201 -36.71515 -33.72105 -33.32538 -32.58445 -30.85012 -30.46447 -28.46500 -27.39455 -27.20879 -25.89038 -24.06397 -22.92096 -22.19366 -21.43239 -20.78286 -19.50858 -18.93371 -16.43222 -16.36485 -16.04062 -15.72935 -15.30737 -14.78258 -14.67102 -14.45600 -14.40100 -14.11921 -13.80809 -13.41744 -13.08429 -12.95759 -12.84510 -12.44497 -12.22749 -12.09768 -12.08433 -11.96780 -11.80404 -11.62934 -11.41583 -11.31823 -11.15121 -10.93831 -10.76062 -10.65857 -10.57029 -10.46244 -10.31450 -10.05735 -9.84545 -9.70993 -9.18679 -9.08848 -8.50121 -8.35830 -8.26800 -7.22787 -6.02467 -4.01718 1.79290 1.85003 3.30618 3.38581 3.43129 3.89952 4.17455 4.44427 4.72709 4.88088 4.99741 5.08863 5.16005 5.23930 5.30285 5.33655 5.35941 5.40726 5.49692 5.54592 5.56723 5.60660 5.64305 5.68516 5.75270 5.76145 5.84066 5.90990 5.96439 6.00816 6.06100 6.10458 6.15415 6.20117 6.26973 6.32761 6.43274 6.47968 6.51797 6.56253 6.75904 6.86403 6.89282 6.92150 7.11582 7.34333 7.35224 7.44802 7.46579 7.82753 8.11280 8.20531 8.55797 9.06026 9.61750 11.08546 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.005232 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.997727 B = 5350.713148 C = 7772.063344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.081 4.081 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.526 5.526 9 C 0.188 3.812 10 C -0.504 4.504 11 H 0.064 0.936 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.284 1.284 18 C 0.090 3.910 19 C -0.060 4.060 20 C -0.103 4.103 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.099 4.099 25 C -0.137 4.137 26 C 0.058 3.942 27 O -0.379 6.379 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.018 0.982 37 H 0.089 0.911 38 H -0.012 1.012 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.046 0.954 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 8.827 -6.178 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.074 3.926 3 C -0.194 4.194 4 C -0.176 4.176 5 C -0.100 4.100 6 H 0.082 0.918 7 C -0.061 4.061 8 N -0.250 5.250 9 C 0.063 3.937 10 C -0.542 4.542 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.038 4.038 19 C -0.060 4.060 20 C -0.122 4.122 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.174 4.174 26 C -0.019 4.019 27 O -0.298 6.298 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.006 0.994 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.065 0.935 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.377 8.630 -6.643 15.750 hybrid contribution 0.925 -0.148 0.818 1.244 sum -10.453 8.482 -5.825 14.667 Atomic orbital electron populations 1.22439 0.96203 1.02737 1.02134 1.21411 0.92748 0.92483 0.85997 1.21749 1.01963 0.93733 1.01969 1.22218 1.01976 0.96168 0.97204 1.21214 0.99654 0.92994 0.96102 0.91751 1.22042 1.01269 0.88556 0.94225 1.62105 0.99839 1.08846 1.54233 1.19842 0.91856 0.91901 0.90100 1.21177 0.95295 1.32715 1.05051 0.91812 1.24952 0.98930 0.95463 0.95112 1.69969 1.33211 1.32837 1.17630 0.86544 0.84582 0.77932 0.79003 1.19640 1.21191 1.21055 1.21041 0.92056 0.93002 0.97720 1.19780 0.96283 0.96081 0.93870 1.20899 0.98009 0.96691 0.96593 1.21012 1.00961 0.93942 0.98726 1.21011 1.00592 0.98922 0.94279 1.21062 0.98540 0.96744 0.97641 1.21124 0.97896 0.93337 0.99432 1.22072 1.01862 1.00296 0.93218 1.22658 0.98224 0.81944 0.99052 1.87914 1.73924 1.25078 1.42929 0.91821 0.92315 0.91655 0.91873 0.92209 0.91398 0.91552 0.91003 0.96366 0.89256 0.99440 0.94197 0.93092 0.91442 0.95256 0.86616 0.86796 0.86864 0.86585 0.86208 0.91338 0.89511 0.93534 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 7.93 37.15 0.29 -1.61 16 2 C 0.11 1.38 1.11 -90.58 -0.10 1.28 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.14 -1.83 4.21 -26.59 -0.11 -1.94 16 5 C -0.08 -1.20 2.02 -90.44 -0.18 -1.39 16 6 H 0.06 0.92 5.12 -51.93 -0.27 0.65 16 7 C 0.07 1.24 4.22 -3.82 -0.02 1.22 16 8 N -0.53 -10.64 4.00 -237.52 -0.95 -11.59 16 9 C 0.19 4.71 4.48 -4.98 -0.02 4.69 16 10 C -0.50 -13.79 8.10 -34.44 -0.28 -14.07 16 11 H 0.06 1.74 7.38 -52.48 -0.39 1.36 16 12 C 0.06 1.59 5.45 -17.82 -0.10 1.49 16 13 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 14 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.09 1.57 4.95 -4.97 -0.02 1.54 16 19 C -0.06 -1.04 4.90 -104.62 -0.51 -1.55 16 20 C -0.10 -1.62 9.70 -39.58 -0.38 -2.00 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 23 C -0.12 -1.95 10.05 -39.59 -0.40 -2.35 16 24 C -0.10 -1.77 7.87 -39.58 -0.31 -2.09 16 25 C -0.14 -2.12 5.28 -26.59 -0.14 -2.26 16 26 C 0.06 0.77 6.52 37.21 0.24 1.01 16 27 O -0.38 -5.41 10.24 -35.23 -0.36 -5.77 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.73 4.98 -51.93 -0.26 0.47 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 37 H 0.09 1.88 6.52 -51.93 -0.34 1.54 16 38 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 39 H 0.04 1.07 5.60 -51.93 -0.29 0.78 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 42 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 43 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 47 H 0.12 2.22 7.91 -52.49 -0.42 1.81 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.09 1.46 7.89 -51.93 -0.41 1.05 16 50 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 51 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -29.69 390.35 -11.14 -40.83 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.92 Total: 3.31 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -2.51 Total: -23.65 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.21 Total: -37.21 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.36 Total: -5.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.69 -11.14 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207350332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.012 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds