Wall clock time and date at job start Tue Mar 31 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.49020 * 2 1 4 4 C 1.53089 * 109.48275 * 120.02790 * 2 1 3 5 5 C 1.53181 * 109.16157 * 62.37546 * 4 2 1 6 6 H 1.08993 * 109.54290 * 297.02279 * 5 4 2 7 7 C 1.53000 * 109.54295 * 176.84517 * 5 4 2 8 8 N 1.46900 * 109.47206 * 174.33283 * 7 5 4 9 9 C 1.46895 * 111.00022 * 160.49332 * 8 7 5 10 10 C 1.50696 * 109.47540 * 295.79959 * 9 8 7 11 11 H 1.08007 * 119.99859 * 355.21263 * 10 9 8 12 12 C 1.37873 * 120.00403 * 175.21120 * 10 9 8 13 13 N 1.31514 * 120.00201 * 5.13952 * 12 10 9 14 14 Si 1.86802 * 120.00062 * 185.14435 * 12 10 9 15 15 H 1.48501 * 109.47152 * 5.00099 * 14 12 10 16 16 H 1.48500 * 109.47339 * 125.00363 * 14 12 10 17 17 H 1.48503 * 109.46969 * 245.00254 * 14 12 10 18 18 C 1.46901 * 110.99969 * 284.44757 * 8 7 5 19 19 C 1.50701 * 109.47151 * 169.99451 * 18 8 7 20 20 C 1.38227 * 120.00341 * 269.72942 * 19 18 8 21 21 C 1.38239 * 119.99874 * 179.76300 * 20 19 18 22 22 C 1.38235 * 119.99976 * 0.51170 * 21 20 19 23 23 C 1.38228 * 119.99829 * 359.73978 * 22 21 20 24 24 C 1.38234 * 120.00385 * 0.02562 * 23 22 21 25 25 C 1.53177 * 109.03660 * 56.98278 * 5 4 2 26 26 C 1.53101 * 109.16209 * 303.01939 * 25 5 4 27 27 O 1.42899 * 109.41480 * 57.60880 * 26 25 5 28 28 H 1.09004 * 109.47720 * 299.96842 * 1 2 3 29 29 H 1.08996 * 109.47656 * 59.97076 * 1 2 3 30 30 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47394 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47162 * 300.03144 * 3 2 1 33 33 H 1.09006 * 109.47125 * 60.02668 * 3 2 1 34 34 H 1.08996 * 109.52252 * 302.47077 * 4 2 1 35 35 H 1.09002 * 109.57733 * 182.31542 * 4 2 1 36 36 H 1.09001 * 109.47183 * 54.33515 * 7 5 4 37 37 H 1.08994 * 109.47539 * 294.33477 * 7 5 4 38 38 H 1.08999 * 109.47004 * 55.80070 * 9 8 7 39 39 H 1.09005 * 109.47314 * 175.79943 * 9 8 7 40 40 H 0.96999 * 120.00639 * 179.97438 * 13 12 10 41 41 H 1.09004 * 109.46927 * 50.00414 * 18 8 7 42 42 H 1.08992 * 109.47606 * 289.99891 * 18 8 7 43 43 H 1.08004 * 120.00107 * 0.02562 * 20 19 18 44 44 H 1.07998 * 119.99979 * 180.23083 * 21 20 19 45 45 H 1.07999 * 119.99993 * 179.72215 * 22 21 20 46 46 H 1.08006 * 119.99820 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00422 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.52624 * 62.91948 * 25 5 4 49 49 H 1.08993 * 109.52443 * 183.11690 * 25 5 4 50 50 H 1.09001 * 109.47544 * 297.62776 * 26 25 5 51 51 H 1.08995 * 109.48872 * 177.59490 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 1.5757 -2.1813 1.2121 6 1 0.4868 -2.2180 1.2424 7 6 2.1468 -2.9315 2.4171 8 7 1.5926 -4.2914 2.4549 9 6 2.4262 -5.1768 3.2789 10 6 3.7861 -5.3196 2.6454 11 1 3.9844 -4.8676 1.6847 12 6 4.7771 -6.0270 3.2922 13 7 4.5080 -6.6619 4.4120 14 14 6.5023 -6.0836 2.5779 15 1 6.5751 -5.1968 1.3890 16 1 7.4765 -5.6227 3.5996 17 1 6.8267 -7.4762 2.1773 18 6 0.2036 -4.2807 2.9331 19 6 -0.4087 -5.6424 2.7282 20 6 -1.0665 -5.9340 1.5480 21 6 -1.6239 -7.1847 1.3582 22 6 -1.5325 -8.1403 2.3529 23 6 -0.8792 -7.8470 3.5351 24 6 -0.3176 -6.5979 3.7231 25 6 2.0765 -2.8322 -0.0809 26 6 1.5645 -2.0284 -1.2792 27 8 2.0065 -0.6742 -1.1665 28 1 -0.3635 0.5133 0.8903 29 1 -0.3634 0.5142 -0.8897 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1304 1.4420 -0.0005 32 1 1.6768 1.9565 -0.8897 33 1 1.6776 1.9562 0.8903 34 1 1.6420 -0.2357 2.1398 35 1 3.1297 -0.6873 1.2721 36 1 1.8795 -2.4046 3.3331 37 1 3.2321 -2.9837 2.3316 38 1 2.5330 -4.7507 4.2764 39 1 1.9544 -6.1568 3.3510 40 1 5.2051 -7.1599 4.8669 41 1 -0.3670 -3.5382 2.3752 42 1 0.1864 -4.0304 3.9937 43 1 -1.1414 -5.1861 0.7724 44 1 -2.1346 -7.4138 0.4346 45 1 -1.9719 -9.1160 2.2064 46 1 -0.8082 -8.5935 4.3125 47 1 0.1925 -6.3686 4.6470 48 1 3.1665 -2.8399 -0.0865 49 1 1.7037 -3.8546 -0.1422 50 1 0.4750 -2.0550 -1.2958 51 1 1.9529 -2.4620 -2.2006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207350332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:25 Heat of formation + Delta-G solvation = -49.179206 kcal Electronic energy + Delta-G solvation = -27923.308259 eV Core-core repulsion = 24400.089063 eV Total energy + Delta-G solvation = -3523.219196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07252 -40.20651 -38.20644 -35.13409 -34.55170 -34.29219 -32.27076 -31.69381 -29.77104 -29.01852 -28.15184 -27.17285 -25.78877 -24.17647 -23.45686 -22.96461 -22.04112 -20.95319 -20.03783 -18.51397 -17.62725 -17.13076 -16.95345 -16.61579 -16.40129 -16.04671 -15.89454 -15.66892 -15.31274 -15.16565 -14.82122 -14.53185 -14.19275 -13.93772 -13.87291 -13.65052 -13.41623 -13.32101 -13.06530 -12.98630 -12.90002 -12.74019 -12.66724 -12.55251 -12.46689 -12.42711 -12.07539 -11.94911 -11.82555 -11.73146 -11.58323 -11.26506 -11.18690 -10.83088 -10.58159 -10.22191 -9.69173 -9.56758 -8.94254 -8.20227 -6.26854 0.54145 0.60754 1.36072 1.37365 1.49955 2.38229 2.89222 2.93233 3.12893 3.41140 3.83164 3.91280 3.93415 3.97789 4.04696 4.08098 4.23178 4.23915 4.33094 4.39930 4.44333 4.49081 4.53520 4.65777 4.69331 4.70609 4.74424 4.78900 4.85146 4.86994 4.91271 4.96565 4.98772 5.05863 5.14091 5.18239 5.20066 5.24859 5.28774 5.31085 5.38935 5.44180 5.46669 5.60867 5.65334 5.67333 5.69419 5.84059 6.09785 6.22403 6.37926 6.45385 6.66567 6.89907 7.41271 8.91014 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.005232 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.997727 B = 5350.713148 C = 7772.063344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.068 4.068 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.524 5.524 9 C 0.207 3.793 10 C -0.514 4.514 11 H 0.059 0.941 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.957 3.043 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.093 3.907 19 C -0.081 4.081 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.132 4.132 26 C 0.063 3.937 27 O -0.394 6.394 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.055 0.945 38 H -0.048 1.048 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.097 0.903 42 H 0.018 0.982 43 H 0.136 0.864 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.127 0.873 47 H 0.094 0.906 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 9.628 -8.413 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.069 3.931 3 C -0.193 4.193 4 C -0.173 4.173 5 C -0.087 4.087 6 H 0.099 0.901 7 C -0.058 4.058 8 N -0.248 5.248 9 C 0.081 3.919 10 C -0.552 4.552 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.782 3.218 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.034 4.034 19 C -0.082 4.082 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.170 4.170 26 C -0.013 4.013 27 O -0.314 6.314 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.074 0.926 38 H -0.031 1.031 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.036 0.964 43 H 0.154 0.846 44 H 0.167 0.833 45 H 0.163 0.837 46 H 0.145 0.855 47 H 0.112 0.888 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.999 9.449 -8.887 18.364 hybrid contribution 1.376 -0.418 1.541 2.108 sum -11.624 9.030 -7.346 16.450 Atomic orbital electron populations 1.22408 0.94479 1.02872 1.03391 1.21596 0.94094 0.92932 0.84453 1.21773 1.01442 0.92731 1.03338 1.22211 1.01009 0.95158 0.98933 1.21103 1.00222 0.93503 0.93863 0.90079 1.22026 0.99472 0.88080 0.96206 1.62045 1.00703 1.09168 1.52880 1.19428 0.91847 0.91783 0.88841 1.21450 0.96561 1.32286 1.04905 0.92245 1.25787 1.02940 0.95104 0.95495 1.70092 1.34505 1.33682 1.18965 0.85516 0.79689 0.78096 0.78456 1.18984 1.20558 1.20457 1.21093 0.90458 0.94427 0.97446 1.19854 0.97576 0.95843 0.94899 1.21174 0.97431 0.97977 0.96048 1.21453 0.99933 0.93068 0.99825 1.21415 0.99462 1.00414 0.93308 1.21305 0.98712 0.96193 0.99049 1.21113 0.99357 0.94941 0.99152 1.21986 1.00103 1.00107 0.94827 1.22635 0.99235 0.81370 0.98044 1.87909 1.74546 1.25243 1.43750 0.90316 0.91392 0.92018 0.92805 0.91357 0.89522 0.90053 0.92773 0.96292 0.92609 1.03055 0.96259 0.92927 0.88516 0.96392 0.84646 0.83300 0.83683 0.85466 0.88765 0.94084 0.90989 0.91619 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 7.93 71.98 0.57 -2.55 16 2 C 0.11 2.41 1.11 -10.77 -0.01 2.39 16 3 C -0.14 -2.51 8.85 71.98 0.64 -1.88 16 4 C -0.13 -3.44 4.21 30.68 0.13 -3.31 16 5 C -0.07 -1.99 2.02 -10.67 -0.02 -2.01 16 6 H 0.08 2.13 5.12 -2.39 -0.01 2.11 16 7 C 0.07 2.67 4.22 86.30 0.36 3.03 16 8 N -0.52 -21.96 4.00 -905.39 -3.63 -25.59 16 9 C 0.21 11.02 4.48 85.56 0.38 11.40 16 10 C -0.51 -29.30 8.10 25.60 0.21 -29.09 16 11 H 0.06 3.37 7.38 -2.91 -0.02 3.35 16 12 C 0.00 0.27 5.45 84.65 0.46 0.73 16 13 N -0.93 -56.72 13.29 21.45 0.29 -56.44 16 14 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 C 0.09 3.31 4.95 85.56 0.42 3.73 16 19 C -0.08 -2.87 4.90 -19.87 -0.10 -2.96 16 20 C -0.11 -3.19 9.70 22.27 0.22 -2.97 16 21 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 22 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 23 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 24 C -0.13 -4.75 7.87 22.27 0.18 -4.58 16 25 C -0.13 -4.06 5.28 30.69 0.16 -3.90 16 26 C 0.06 1.58 6.52 72.02 0.47 2.05 16 27 O -0.39 -10.55 10.24 -148.98 -1.52 -12.07 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.15 4.98 -2.38 -0.01 1.14 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 37 H 0.06 2.48 6.52 -2.39 -0.02 2.47 16 38 H -0.05 -2.85 8.14 -2.39 -0.02 -2.87 16 39 H 0.02 1.11 5.60 -2.38 -0.01 1.10 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.10 2.82 6.49 -2.38 -0.02 2.80 16 42 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 43 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.09 3.87 7.91 -2.91 -0.02 3.85 16 48 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 2.41 7.89 -2.39 -0.02 2.39 16 50 H 0.07 1.40 6.34 -2.39 -0.02 1.39 16 51 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -66.99 390.35 2.78 -64.22 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.88 Total: 22.80 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.74 Total: -40.27 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.34 Total: -82.03 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.52 Total: -12.07 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.99 2.78 -64.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207350332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.036 kcal (2) G-P(sol) polarization free energy of solvation -66.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds