Wall clock time and date at job start Tue Mar 31 2020 11:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99524 * 2 1 4 4 H 1.48500 * 109.47358 * 269.99940 * 3 2 1 5 5 H 1.48495 * 109.47329 * 30.00192 * 3 2 1 6 6 H 1.48498 * 109.46957 * 150.00138 * 3 2 1 7 7 C 1.37871 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00032 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00268 * 180.02562 * 7 2 1 10 10 C 1.53120 * 109.52402 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27940 * 177.62315 * 10 9 7 12 12 N 1.46844 * 109.52178 * 300.81941 * 11 10 9 13 13 C 1.46901 * 111.00526 * 185.84060 * 12 11 10 14 14 C 1.52992 * 109.47859 * 170.00090 * 13 12 11 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.42907 * 113.99838 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.46942 * 180.02562 * 18 17 16 20 20 C 1.38239 * 119.99907 * 269.72277 * 19 18 17 21 21 C 1.38231 * 120.00116 * 179.76807 * 20 19 18 22 22 C 1.38238 * 119.99772 * 0.51018 * 21 20 19 23 23 C 1.38238 * 120.00154 * 359.74491 * 22 21 20 24 24 C 1.38229 * 120.00162 * 90.00313 * 19 18 17 25 25 C 1.46848 * 111.20087 * 61.74385 * 12 11 10 26 26 C 1.53048 * 109.52064 * 298.25789 * 25 12 11 27 27 H 0.96996 * 120.00257 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.52647 * 59.87241 * 9 7 2 29 29 H 1.09004 * 109.50479 * 57.67903 * 10 9 7 30 30 H 1.08998 * 109.50625 * 297.56217 * 10 9 7 31 31 H 1.09003 * 109.46575 * 180.80459 * 11 10 9 32 32 H 1.08995 * 109.45502 * 60.82603 * 11 10 9 33 33 H 1.09002 * 109.46980 * 49.99749 * 13 12 11 34 34 H 1.09001 * 109.46628 * 290.00171 * 13 12 11 35 35 H 1.09002 * 109.47103 * 59.99734 * 14 13 12 36 36 H 1.08998 * 109.46862 * 300.00546 * 14 13 12 37 37 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 38 38 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 41 41 H 1.09004 * 109.46885 * 300.00332 * 18 17 16 42 42 H 1.08996 * 109.46933 * 60.00042 * 18 17 16 43 43 H 1.08004 * 120.00023 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00092 * 180.23298 * 21 20 19 45 45 H 1.08006 * 119.99867 * 179.72375 * 22 21 20 46 46 H 1.07998 * 119.99999 * 179.97438 * 23 22 21 47 47 H 1.08000 * 120.00222 * 359.97438 * 24 19 18 48 48 H 1.08996 * 109.46339 * 58.26808 * 25 12 11 49 49 H 1.08994 * 109.46869 * 178.24483 * 25 12 11 50 50 H 1.08998 * 109.49998 * 299.23732 * 26 25 12 51 51 H 1.08994 * 109.50211 * 179.11499 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0233 -2.6370 -0.0001 11 6 5.5526 -2.6309 -0.0594 12 7 5.9937 -1.9361 -1.2755 13 6 7.4507 -2.0308 -1.4370 14 6 7.8445 -1.5201 -2.8243 15 6 9.3621 -1.6182 -2.9921 16 6 9.7559 -1.1068 -4.3794 17 8 11.1733 -1.1990 -4.5362 18 6 11.6484 -0.7445 -5.8051 19 6 13.1476 -0.8868 -5.8604 20 6 13.9565 0.1562 -5.4495 21 6 15.3317 0.0239 -5.4957 22 6 15.8981 -1.1475 -5.9627 23 6 15.0892 -2.1885 -6.3786 24 6 13.7139 -2.0581 -6.3274 25 6 5.5542 -0.5349 -1.2757 26 6 4.0250 -0.4785 -1.2526 27 1 -0.4850 0.8400 -0.0004 28 1 3.8755 -0.6788 0.8891 29 1 3.6276 -3.1635 -0.8686 30 1 3.6966 -3.1392 0.9105 31 1 5.9197 -3.6571 -0.0740 32 1 5.9478 -2.1162 0.8164 33 1 7.7612 -3.0702 -1.3308 34 1 7.9408 -1.4254 -0.6744 35 1 7.5340 -0.4807 -2.9305 36 1 7.3544 -2.1253 -3.5869 37 1 9.6730 -2.6575 -2.8858 38 1 9.8518 -1.0125 -2.2296 39 1 9.2662 -1.7121 -5.1422 40 1 9.4451 -0.0676 -4.4853 41 1 11.1975 -1.3423 -6.5972 42 1 11.3772 0.3024 -5.9408 43 1 13.5141 1.0729 -5.0885 44 1 15.9637 0.8373 -5.1712 45 1 16.9726 -1.2492 -6.0030 46 1 15.5317 -3.1035 -6.7438 47 1 13.0820 -2.8714 -6.6523 48 1 5.9495 -0.0302 -0.3941 49 1 5.9224 -0.0388 -2.1736 50 1 3.6293 -0.9710 -2.1409 51 1 3.6994 0.5615 -1.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209259259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:54 Heat of formation + Delta-G solvation = -34.129928 kcal Electronic energy + Delta-G solvation = -25298.941900 eV Core-core repulsion = 21776.375289 eV Total energy + Delta-G solvation = -3522.566610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.76088 -38.70903 -38.01556 -35.27006 -33.35829 -32.21951 -31.31934 -31.29573 -30.21621 -28.20629 -26.33288 -25.27598 -22.97871 -22.80099 -22.64713 -21.80496 -21.34844 -20.51534 -18.80408 -17.31562 -16.74685 -16.66371 -16.62071 -15.93001 -15.59751 -15.55100 -14.80530 -14.51635 -14.36045 -14.01645 -13.83531 -13.74072 -13.24198 -13.16673 -13.01425 -12.79576 -12.65630 -12.45356 -12.09590 -11.86228 -11.75617 -11.53617 -11.41854 -11.32156 -11.12606 -11.03482 -10.80512 -10.62300 -10.51264 -10.04394 -9.91025 -9.85799 -9.57339 -9.31108 -9.23495 -9.03548 -8.88755 -8.48701 -7.91809 -6.03451 -4.01518 0.86654 1.01183 3.14401 3.28249 3.38588 3.40924 3.67735 4.24530 4.41211 4.43864 4.46475 4.61516 4.71935 4.74800 4.86233 4.88164 4.97981 5.11673 5.13554 5.17646 5.25370 5.27669 5.31609 5.44787 5.56690 5.58767 5.63953 5.67400 5.67983 5.74608 5.81308 5.91227 5.95334 6.04565 6.10773 6.13492 6.14796 6.19728 6.21709 6.28855 6.40482 6.48741 6.58175 6.77794 6.87413 6.89179 6.96585 7.25948 7.46906 7.56552 7.68072 7.82869 8.57778 9.01290 9.59755 11.10102 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.001736 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.343482 B =16129.546035 C =16658.330127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.535 5.535 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.062 3.938 17 O -0.383 6.383 18 C 0.102 3.898 19 C -0.089 4.089 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.099 4.099 25 C 0.053 3.947 26 C -0.116 4.116 27 H 0.262 0.738 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.023 0.977 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.286 -1.901 -12.632 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.071 4.071 12 N -0.260 5.260 13 C -0.071 4.071 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.014 4.014 17 O -0.303 6.303 18 C 0.026 3.974 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.074 4.074 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 30.007 -2.096 -12.874 32.719 hybrid contribution 0.603 1.544 0.446 1.717 sum 30.611 -0.552 -12.429 33.042 Atomic orbital electron populations 1.69904 1.06256 1.26791 1.51246 1.25025 0.94669 0.98983 0.94633 0.86848 0.79808 0.83721 0.77843 1.20593 1.22616 1.19286 1.21074 0.88901 0.94400 1.50332 0.90874 1.19184 0.96598 0.92052 0.92802 1.21495 0.91412 0.99248 1.01252 1.22176 0.98108 0.97243 0.89523 1.61922 1.10593 1.14850 1.38620 1.22034 0.88647 1.00640 0.95813 1.21519 0.93590 1.02099 0.98020 1.21471 0.96103 1.02268 0.95462 1.22565 0.80713 1.00027 0.98139 1.87954 1.22342 1.85873 1.34125 1.21291 0.90534 0.99051 0.86562 1.19636 0.94295 0.94721 1.00277 1.21098 0.93628 0.98713 0.98299 1.21168 0.94901 0.98022 1.00105 1.21219 0.99924 0.93661 0.98627 1.21169 0.93609 0.99054 1.00367 1.21093 0.95130 0.96740 0.98750 1.22239 0.98128 0.87837 0.99242 1.22011 0.91516 0.99848 1.02001 0.92781 0.96133 0.91803 0.92414 0.91875 0.95708 0.91091 0.95397 0.91670 0.90810 0.91096 0.91348 0.93091 0.93236 0.92403 0.92436 0.85910 0.85880 0.85999 0.85868 0.85884 0.95840 0.91783 0.91290 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.21 24.36 -169.99 -4.14 18.07 16 4 H -0.28 -6.77 6.89 56.52 0.39 -6.38 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 7 C -0.51 -14.42 9.15 -34.44 -0.32 -14.74 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.10 -1.94 5.32 -26.65 -0.14 -2.09 16 11 C 0.06 0.97 5.46 -3.83 -0.02 0.94 16 12 N -0.54 -8.84 4.66 -234.67 -1.09 -9.93 16 13 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 14 C -0.11 -1.29 5.14 -26.74 -0.14 -1.42 16 15 C -0.11 -1.14 5.58 -26.73 -0.15 -1.29 16 16 C 0.06 0.58 5.94 37.16 0.22 0.80 16 17 O -0.38 -4.07 10.33 -35.23 -0.36 -4.44 16 18 C 0.10 0.85 6.06 36.00 0.22 1.07 16 19 C -0.09 -0.78 5.51 -104.63 -0.58 -1.35 16 20 C -0.10 -0.80 9.70 -39.58 -0.38 -1.19 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 22 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16 25 C 0.05 0.96 5.29 -3.83 -0.02 0.94 16 26 C -0.12 -2.53 4.84 -26.65 -0.13 -2.66 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.93 8.02 -51.93 -0.42 0.52 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 34 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 35 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.03 6.21 -51.93 -0.32 0.71 16 50 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 51 H 0.05 1.08 3.38 -51.93 -0.18 0.90 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -31.55 395.35 -11.39 -42.94 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -9.24 Total: -2.31 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.29 Total: -23.16 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.32 Total: -37.07 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.36 Total: -4.44 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.55 -11.39 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209259259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.812 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds