Wall clock time and date at job start Tue Mar 31 2020 11:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99524 * 2 1 4 4 H 1.48500 * 109.47358 * 269.99940 * 3 2 1 5 5 H 1.48495 * 109.47329 * 30.00192 * 3 2 1 6 6 H 1.48498 * 109.46957 * 150.00138 * 3 2 1 7 7 C 1.37871 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00032 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00268 * 180.02562 * 7 2 1 10 10 C 1.53120 * 109.52402 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27940 * 177.62315 * 10 9 7 12 12 N 1.46844 * 109.52178 * 300.81941 * 11 10 9 13 13 C 1.46901 * 111.00526 * 185.84060 * 12 11 10 14 14 C 1.52992 * 109.47859 * 170.00090 * 13 12 11 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.42907 * 113.99838 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.46942 * 180.02562 * 18 17 16 20 20 C 1.38239 * 119.99907 * 269.72277 * 19 18 17 21 21 C 1.38231 * 120.00116 * 179.76807 * 20 19 18 22 22 C 1.38238 * 119.99772 * 0.51018 * 21 20 19 23 23 C 1.38238 * 120.00154 * 359.74491 * 22 21 20 24 24 C 1.38229 * 120.00162 * 90.00313 * 19 18 17 25 25 C 1.46848 * 111.20087 * 61.74385 * 12 11 10 26 26 C 1.53048 * 109.52064 * 298.25789 * 25 12 11 27 27 H 0.96996 * 120.00257 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.52647 * 59.87241 * 9 7 2 29 29 H 1.09004 * 109.50479 * 57.67903 * 10 9 7 30 30 H 1.08998 * 109.50625 * 297.56217 * 10 9 7 31 31 H 1.09003 * 109.46575 * 180.80459 * 11 10 9 32 32 H 1.08995 * 109.45502 * 60.82603 * 11 10 9 33 33 H 1.09002 * 109.46980 * 49.99749 * 13 12 11 34 34 H 1.09001 * 109.46628 * 290.00171 * 13 12 11 35 35 H 1.09002 * 109.47103 * 59.99734 * 14 13 12 36 36 H 1.08998 * 109.46862 * 300.00546 * 14 13 12 37 37 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 38 38 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 40 40 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 41 41 H 1.09004 * 109.46885 * 300.00332 * 18 17 16 42 42 H 1.08996 * 109.46933 * 60.00042 * 18 17 16 43 43 H 1.08004 * 120.00023 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00092 * 180.23298 * 21 20 19 45 45 H 1.08006 * 119.99867 * 179.72375 * 22 21 20 46 46 H 1.07998 * 119.99999 * 179.97438 * 23 22 21 47 47 H 1.08000 * 120.00222 * 359.97438 * 24 19 18 48 48 H 1.08996 * 109.46339 * 58.26808 * 25 12 11 49 49 H 1.08994 * 109.46869 * 178.24483 * 25 12 11 50 50 H 1.08998 * 109.49998 * 299.23732 * 26 25 12 51 51 H 1.08994 * 109.50211 * 179.11499 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0233 -2.6370 -0.0001 11 6 5.5526 -2.6309 -0.0594 12 7 5.9937 -1.9361 -1.2755 13 6 7.4507 -2.0308 -1.4370 14 6 7.8445 -1.5201 -2.8243 15 6 9.3621 -1.6182 -2.9921 16 6 9.7559 -1.1068 -4.3794 17 8 11.1733 -1.1990 -4.5362 18 6 11.6484 -0.7445 -5.8051 19 6 13.1476 -0.8868 -5.8604 20 6 13.9565 0.1562 -5.4495 21 6 15.3317 0.0239 -5.4957 22 6 15.8981 -1.1475 -5.9627 23 6 15.0892 -2.1885 -6.3786 24 6 13.7139 -2.0581 -6.3274 25 6 5.5542 -0.5349 -1.2757 26 6 4.0250 -0.4785 -1.2526 27 1 -0.4850 0.8400 -0.0004 28 1 3.8755 -0.6788 0.8891 29 1 3.6276 -3.1635 -0.8686 30 1 3.6966 -3.1392 0.9105 31 1 5.9197 -3.6571 -0.0740 32 1 5.9478 -2.1162 0.8164 33 1 7.7612 -3.0702 -1.3308 34 1 7.9408 -1.4254 -0.6744 35 1 7.5340 -0.4807 -2.9305 36 1 7.3544 -2.1253 -3.5869 37 1 9.6730 -2.6575 -2.8858 38 1 9.8518 -1.0125 -2.2296 39 1 9.2662 -1.7121 -5.1422 40 1 9.4451 -0.0676 -4.4853 41 1 11.1975 -1.3423 -6.5972 42 1 11.3772 0.3024 -5.9408 43 1 13.5141 1.0729 -5.0885 44 1 15.9637 0.8373 -5.1712 45 1 16.9726 -1.2492 -6.0030 46 1 15.5317 -3.1035 -6.7438 47 1 13.0820 -2.8714 -6.6523 48 1 5.9495 -0.0302 -0.3941 49 1 5.9224 -0.0388 -2.1736 50 1 3.6293 -0.9710 -2.1409 51 1 3.6994 0.5615 -1.2368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209259259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:53 Heat of formation + Delta-G solvation = -52.019767 kcal Electronic energy + Delta-G solvation = -25299.717661 eV Core-core repulsion = 21776.375289 eV Total energy + Delta-G solvation = -3523.342372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.31502 -40.06839 -38.74221 -36.55295 -34.82819 -33.44200 -32.56550 -31.80708 -31.72807 -29.36493 -27.41574 -26.46168 -24.20318 -24.02799 -23.49550 -22.73410 -22.24182 -21.56870 -20.46630 -18.82784 -17.85532 -17.43088 -17.32021 -17.25589 -16.38266 -16.33108 -16.04439 -15.76201 -15.45756 -15.15451 -15.01255 -14.81061 -14.64125 -14.28869 -14.19255 -13.75191 -13.66764 -13.53522 -13.35991 -13.27799 -12.84989 -12.64339 -12.49089 -12.32396 -12.15087 -12.09768 -11.91591 -11.81439 -11.78200 -11.68148 -11.58174 -11.26735 -10.95824 -10.77133 -10.59240 -10.58611 -9.84159 -9.77672 -9.19332 -8.29424 -6.32439 0.32342 0.48123 1.28763 1.34059 1.44755 2.32253 2.53159 2.94964 3.05813 3.18840 3.82262 3.89593 3.95033 4.05580 4.09417 4.13855 4.19120 4.23570 4.27919 4.31200 4.33680 4.40933 4.43704 4.45246 4.52528 4.63098 4.65295 4.68700 4.74219 4.74694 4.76343 4.84154 4.88963 4.91843 4.98311 5.05325 5.06611 5.13900 5.20147 5.27567 5.34868 5.41413 5.53321 5.53392 5.59643 5.65089 5.68311 5.78659 6.07904 6.19264 6.23403 6.30982 6.33530 6.74524 7.32745 8.87712 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.001736 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.343482 B =16129.546035 C =16658.330127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.250 1.250 7 C -0.517 4.517 8 H 0.031 0.969 9 C 0.011 3.989 10 C -0.093 4.093 11 C 0.065 3.935 12 N -0.545 5.545 13 C 0.058 3.942 14 C -0.107 4.107 15 C -0.107 4.107 16 C 0.061 3.939 17 O -0.403 6.403 18 C 0.100 3.900 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.114 4.114 25 C 0.061 3.939 26 C -0.114 4.114 27 H 0.265 0.735 28 H 0.015 0.985 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.129 0.871 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.130 0.870 48 H 0.025 0.975 49 H 0.087 0.913 50 H 0.055 0.945 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.717 -1.350 -13.296 36.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.049 0.951 9 C -0.008 4.008 10 C -0.131 4.131 11 C -0.063 4.063 12 N -0.270 5.270 13 C -0.070 4.070 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.015 4.015 17 O -0.323 6.323 18 C 0.024 3.976 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.067 4.067 26 C -0.152 4.152 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.147 0.853 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.160 0.840 47 H 0.148 0.852 48 H 0.044 0.956 49 H 0.106 0.894 50 H 0.074 0.926 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 33.466 -1.563 -13.546 36.137 hybrid contribution -0.496 1.256 0.648 1.498 sum 32.970 -0.307 -12.899 35.404 Atomic orbital electron populations 1.70059 1.08203 1.27916 1.53068 1.25906 0.95436 1.03049 0.94327 0.85799 0.78931 0.78666 0.78760 1.18988 1.22695 1.17422 1.21420 0.91707 0.92845 1.49563 0.95068 1.19160 0.93373 0.94689 0.93610 1.21402 0.94374 0.96721 1.00620 1.22073 0.95081 0.99066 0.90077 1.61888 1.13059 1.13799 1.38275 1.22124 0.86137 1.01809 0.96900 1.21428 0.94373 1.01759 0.96890 1.21358 0.95034 1.02307 0.95778 1.22581 0.80424 1.00507 0.97998 1.87916 1.22887 1.86192 1.35332 1.21397 0.90561 0.99648 0.85981 1.19820 0.94602 0.95330 1.01109 1.21309 0.94284 0.98997 0.98722 1.21468 0.94843 0.98840 0.99836 1.21560 1.01171 0.93362 0.97928 1.21477 0.93411 0.99983 1.00057 1.21312 0.95898 0.96899 0.99088 1.22110 0.94897 0.89162 1.00542 1.21865 0.94732 0.98542 1.00023 0.92652 0.96653 0.93078 0.92657 0.89201 0.95263 0.89712 0.94895 0.91867 0.90989 0.91013 0.91615 0.92373 0.92694 0.91496 0.91661 0.85334 0.84097 0.83837 0.84000 0.85179 0.95637 0.89438 0.92580 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 2 C 0.01 0.55 5.45 84.65 0.46 1.01 16 3 Si 0.95 45.83 24.36 68.60 1.67 47.50 16 4 H -0.26 -12.01 6.89 99.48 0.69 -11.32 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.25 -11.23 6.53 99.48 0.65 -10.58 16 7 C -0.52 -30.24 9.15 25.60 0.23 -30.00 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C 0.01 0.50 1.75 -11.46 -0.02 0.48 16 10 C -0.09 -3.73 5.32 30.65 0.16 -3.56 16 11 C 0.06 2.02 5.46 86.33 0.47 2.49 16 12 N -0.55 -16.42 4.66 -896.37 -4.17 -20.60 16 13 C 0.06 1.30 4.96 86.30 0.43 1.73 16 14 C -0.11 -2.07 5.14 30.59 0.16 -1.91 16 15 C -0.11 -1.83 5.58 30.59 0.17 -1.66 16 16 C 0.06 1.02 5.94 71.98 0.43 1.44 16 17 O -0.40 -7.97 10.33 -148.98 -1.54 -9.50 16 18 C 0.10 1.56 6.06 71.23 0.43 1.99 16 19 C -0.11 -1.80 5.51 -19.87 -0.11 -1.91 16 20 C -0.12 -1.76 9.70 22.27 0.22 -1.54 16 21 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 22 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 23 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 24 C -0.11 -1.71 9.70 22.27 0.22 -1.50 16 25 C 0.06 2.01 5.29 86.33 0.46 2.46 16 26 C -0.11 -4.82 4.84 30.65 0.15 -4.67 16 27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 29 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.36 8.02 -2.39 -0.02 2.34 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.71 7.99 -2.39 -0.02 1.70 16 34 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.06 1.26 6.43 -2.39 -0.02 1.25 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 42 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 43 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 45 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 46 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.09 2.50 6.21 -2.39 -0.01 2.49 16 50 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.04 1.63 3.38 -2.39 -0.01 1.62 16 Total: -1.00 -69.43 395.35 1.57 -67.86 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.79 Total: 14.38 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.52 Total: -39.26 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -3.87 Total: -80.98 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.54 Total: -9.50 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Total: -69.43 1.57 -67.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209259259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.844 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds