Wall clock time and date at job start Tue Mar 31 2020 11:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46864 * 300.00193 * 3 2 1 6 6 H 1.48507 * 109.46791 * 60.00260 * 3 2 1 7 7 C 1.37882 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99695 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.50284 * 60.07754 * 9 7 2 11 11 C 1.53117 * 109.50347 * 300.00092 * 9 7 2 12 12 C 1.53123 * 109.16210 * 182.40709 * 11 9 7 13 13 C 1.53042 * 109.27728 * 57.65195 * 12 11 9 14 14 N 1.46848 * 109.52370 * 300.82317 * 13 12 11 15 15 C 1.46894 * 110.99689 * 185.84168 * 14 13 12 16 16 C 1.52997 * 109.47515 * 66.04595 * 15 14 13 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47145 * 179.97438 * 18 17 16 20 20 C 1.42902 * 114.00186 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47205 * 179.97438 * 20 19 18 22 22 C 1.38236 * 120.00165 * 269.72414 * 21 20 19 23 23 C 1.38230 * 120.00142 * 179.76552 * 22 21 20 24 24 C 1.38236 * 120.00117 * 0.50831 * 23 22 21 25 25 C 1.38237 * 119.99652 * 359.74988 * 24 23 22 26 26 C 1.38235 * 120.00309 * 359.97438 * 25 24 23 27 27 C 1.46840 * 111.19645 * 61.74073 * 14 13 12 28 28 H 0.96999 * 119.99890 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52576 * 62.49806 * 11 9 7 30 30 H 1.09000 * 109.57623 * 302.34370 * 11 9 7 31 31 H 1.09003 * 109.50129 * 297.71637 * 12 11 9 32 32 H 1.08996 * 109.50098 * 177.59506 * 12 11 9 33 33 H 1.09003 * 109.45820 * 180.80706 * 13 12 11 34 34 H 1.08996 * 109.46011 * 60.83967 * 13 12 11 35 35 H 1.09002 * 109.47104 * 306.04327 * 15 14 13 36 36 H 1.08998 * 109.46828 * 186.05159 * 15 14 13 37 37 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 38 38 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 39 39 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 40 40 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 41 41 H 1.09001 * 109.47109 * 299.99380 * 18 17 16 42 42 H 1.09002 * 109.47508 * 59.99571 * 18 17 16 43 43 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 44 44 H 1.09000 * 109.47330 * 59.99777 * 20 19 18 45 45 H 1.08004 * 119.99419 * 0.02562 * 22 21 20 46 46 H 1.08003 * 120.00385 * 180.23345 * 23 22 21 47 47 H 1.08001 * 120.00159 * 179.72194 * 24 23 22 48 48 H 1.08000 * 119.99427 * 179.97438 * 25 24 23 49 49 H 1.07999 * 120.00313 * 179.97438 * 26 25 24 50 50 H 1.09008 * 109.46446 * 58.27301 * 27 14 13 51 51 H 1.09002 * 109.46391 * 178.24165 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5578 -0.8908 11 6 0.3710 -2.5813 1.2497 12 6 -0.3447 -3.9348 1.2725 13 6 0.6954 -5.0569 1.2399 14 7 1.5112 -4.9348 0.0251 15 6 2.4286 -6.0741 -0.1097 16 6 1.6222 -7.3538 -0.3399 17 6 2.5778 -8.5405 -0.4796 18 6 1.7714 -9.8201 -0.7105 19 8 2.6638 -10.9284 -0.8416 20 6 2.0088 -12.1794 -1.0609 21 6 3.0398 -13.2715 -1.1842 22 6 3.5588 -13.5953 -2.4238 23 6 4.5081 -14.5938 -2.5363 24 6 4.9308 -15.2756 -1.4106 25 6 4.4079 -14.9554 -0.1716 26 6 3.4627 -13.9531 -0.0583 27 6 2.2449 -3.6629 0.0038 28 1 -0.4850 0.8400 0.0004 29 1 -0.3669 -1.7793 1.2291 30 1 0.9915 -2.4823 2.1403 31 1 -0.9959 -4.0168 0.4022 32 1 -0.9398 -4.0164 2.1821 33 1 0.1886 -6.0220 1.2416 34 1 1.3375 -4.9825 2.1176 35 1 3.0185 -6.1753 0.8013 36 1 3.0940 -5.9065 -0.9566 37 1 1.0323 -7.2526 -1.2509 38 1 0.9569 -7.5212 0.5071 39 1 3.2434 -8.3733 -1.3264 40 1 3.1673 -8.6415 0.4315 41 1 1.1055 -9.9876 0.1361 42 1 1.1821 -9.7188 -1.6218 43 1 1.3484 -12.3958 -0.2211 44 1 1.4238 -12.1271 -1.9791 45 1 3.2256 -13.0653 -3.3039 46 1 4.9164 -14.8442 -3.5043 47 1 5.6692 -16.0588 -1.4990 48 1 4.7379 -15.4885 0.7078 49 1 3.0539 -13.7032 0.9095 50 1 2.8797 -3.5950 0.8873 51 1 2.8636 -3.6154 -0.8923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209259461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:13 Heat of formation + Delta-G solvation = -57.017929 kcal Electronic energy + Delta-G solvation = -25184.540434 eV Core-core repulsion = 21660.981325 eV Total energy + Delta-G solvation = -3523.559108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.30103 -39.92315 -38.72292 -36.41281 -34.78373 -33.29631 -32.45647 -31.79931 -31.66766 -28.85446 -26.92786 -26.76204 -24.87455 -23.48788 -23.37728 -22.83103 -22.23610 -21.54091 -20.34916 -18.42300 -17.84074 -17.40379 -17.30272 -16.84543 -16.41461 -16.30354 -16.18566 -15.67604 -15.31956 -15.08954 -14.88915 -14.64473 -14.37930 -14.26419 -14.11356 -13.73855 -13.57529 -13.46914 -13.17925 -12.87483 -12.85314 -12.66648 -12.58931 -12.39600 -12.28221 -11.92990 -11.89361 -11.85608 -11.77921 -11.70096 -11.41785 -11.36616 -10.79532 -10.64932 -10.57032 -10.37113 -9.83411 -9.76828 -9.12056 -8.08078 -6.22309 0.33158 0.48883 1.39945 1.41531 1.53007 2.42384 2.55033 3.01161 3.18685 3.25136 3.84114 3.90702 3.96665 4.08108 4.14448 4.21172 4.23950 4.28524 4.31041 4.33724 4.40281 4.42634 4.46762 4.57530 4.63061 4.64411 4.69990 4.73486 4.76047 4.80991 4.88998 4.92417 4.96517 5.04288 5.07189 5.13984 5.14691 5.19698 5.33025 5.41081 5.42506 5.53528 5.54115 5.60289 5.63939 5.65986 5.97461 6.08723 6.13183 6.21739 6.25472 6.39819 6.46830 6.90483 7.45554 8.96686 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034039 B = 0.001604 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.399686 B =17451.266345 C =17851.698546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.550 5.550 15 C 0.056 3.944 16 C -0.100 4.100 17 C -0.108 4.108 18 C 0.063 3.937 19 O -0.405 6.405 20 C 0.100 3.900 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.114 4.114 27 C 0.081 3.919 28 H 0.260 0.740 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.129 0.871 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.130 0.870 50 H 0.013 0.987 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -30.886 -0.896 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.032 3.968 10 H 0.015 0.985 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.063 4.063 14 N -0.274 5.274 15 C -0.072 4.072 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.013 4.013 19 O -0.325 6.325 20 C 0.024 3.976 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.132 4.132 27 C -0.046 4.046 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.147 0.853 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.160 0.840 49 H 0.148 0.852 50 H 0.031 0.969 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.565 -30.753 -1.286 31.116 hybrid contribution 0.599 1.393 0.595 1.629 sum 5.165 -29.360 -0.691 29.819 Atomic orbital electron populations 1.70042 1.07148 1.26999 1.51252 1.25722 0.95680 1.02313 0.94760 0.85559 0.79026 0.79734 0.77637 1.19265 1.20552 1.20556 1.21565 0.92973 0.92263 1.50776 0.93153 1.18607 0.93041 0.91318 0.93842 0.98455 1.21459 0.99093 0.96447 0.97235 1.21600 0.97585 0.94811 1.00938 1.22088 0.95132 0.99294 0.89811 1.61938 1.24808 1.02042 1.38629 1.22111 0.94324 0.90467 1.00254 1.21386 0.97813 0.91739 1.02891 1.21369 0.98390 0.92219 1.02685 1.22558 0.92298 0.85502 1.00909 1.87919 1.35035 1.15862 1.93671 1.21404 0.92899 0.81905 1.01374 1.19831 0.99533 0.97226 0.94271 1.21316 0.96978 0.97691 0.97318 1.21471 0.97363 0.96215 0.99946 1.21556 0.99871 1.00020 0.92593 1.21474 0.97010 0.97757 0.98735 1.21315 0.97498 0.96092 0.98339 1.21968 0.95309 0.89087 0.98253 0.93054 0.92369 0.96071 0.93001 0.91197 0.88854 0.95915 0.95191 0.91274 0.91171 0.91040 0.91611 0.91553 0.92185 0.92395 0.91407 0.91533 0.85279 0.84079 0.83844 0.84031 0.85193 0.96922 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.82 11.35 21.45 0.24 -53.57 16 2 C 0.01 0.79 5.30 84.66 0.45 1.24 16 3 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.54 -30.49 8.56 25.60 0.22 -30.27 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.65 2.26 -11.49 -0.03 2.62 16 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 11 C -0.10 -5.09 5.02 30.67 0.15 -4.94 16 12 C -0.11 -4.32 6.09 30.65 0.19 -4.13 16 13 C 0.06 2.15 5.29 86.33 0.46 2.61 16 14 N -0.55 -19.95 4.65 -896.38 -4.17 -24.13 16 15 C 0.06 1.60 4.96 86.30 0.43 2.03 16 16 C -0.10 -2.23 5.15 30.59 0.16 -2.07 16 17 C -0.11 -2.14 5.58 30.59 0.17 -1.97 16 18 C 0.06 1.13 5.94 71.98 0.43 1.55 16 19 O -0.40 -8.46 10.33 -148.98 -1.54 -10.00 16 20 C 0.10 1.62 6.06 71.24 0.43 2.05 16 21 C -0.11 -1.87 5.51 -19.87 -0.11 -1.98 16 22 C -0.11 -1.84 9.70 22.27 0.22 -1.62 16 23 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 24 C -0.12 -1.53 10.05 22.27 0.22 -1.31 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.11 -1.80 9.70 22.27 0.22 -1.59 16 27 C 0.08 3.56 4.68 86.33 0.40 3.96 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.06 3.21 6.15 -2.39 -0.01 3.19 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.54 6.22 -2.39 -0.01 2.52 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 36 H 0.07 1.98 7.98 -2.39 -0.02 1.96 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.48 6.44 -2.39 -0.02 1.46 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 44 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 45 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 49 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 50 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 51 H 0.05 2.40 8.01 -2.39 -0.02 2.38 16 Total: -1.00 -65.34 402.16 1.87 -63.47 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.86 Total: 14.76 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 4.45 Total: -36.91 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.93 Total: -77.70 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.54 Total: -10.00 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.34 1.87 -63.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209259461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.453 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds