Wall clock time and date at job start Tue Mar 31 2020 11:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00018 * 2 1 4 4 C 1.50693 * 119.99979 * 359.97391 * 3 2 1 5 5 C 1.38233 * 119.99848 * 180.02562 * 3 2 1 6 6 C 1.50696 * 119.99980 * 179.97438 * 5 3 2 7 7 C 1.38233 * 120.00305 * 359.95259 * 5 3 2 8 8 C 1.50699 * 120.00443 * 180.02562 * 7 5 3 9 9 O 1.42902 * 109.47027 * 89.99881 * 8 7 5 10 10 C 1.42904 * 113.99828 * 180.02562 * 9 8 7 11 11 C 1.53514 * 114.16878 * 209.99943 * 10 9 8 12 12 N 1.47482 * 87.93039 * 220.33055 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 23 23 C 1.38241 * 119.99754 * 0.27766 * 7 5 3 24 24 C 1.50704 * 119.99972 * 179.73223 * 23 7 5 25 25 C 1.38234 * 119.99845 * 359.51166 * 23 7 5 26 26 C 1.50703 * 120.00097 * 180.25353 * 25 23 7 27 27 H 1.09001 * 109.47241 * 90.00107 * 1 2 3 28 28 H 1.08999 * 109.47178 * 210.00666 * 1 2 3 29 29 H 1.09001 * 109.46914 * 330.00005 * 1 2 3 30 30 H 1.09008 * 109.47112 * 270.02340 * 4 3 2 31 31 H 1.08999 * 109.47581 * 30.02197 * 4 3 2 32 32 H 1.09005 * 109.47257 * 150.02574 * 4 3 2 33 33 H 1.09005 * 109.47473 * 269.97698 * 6 5 3 34 34 H 1.09004 * 109.47194 * 29.98051 * 6 5 3 35 35 H 1.09005 * 109.47263 * 149.97339 * 6 5 3 36 36 H 1.09005 * 109.46925 * 330.00330 * 8 7 5 37 37 H 1.08995 * 109.47321 * 210.00173 * 8 7 5 38 38 H 1.08999 * 113.38480 * 343.08219 * 10 9 8 39 39 H 1.08994 * 113.47382 * 105.55899 * 11 10 9 40 40 H 1.09003 * 113.47448 * 335.09807 * 11 10 9 41 41 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 42 42 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 44 44 H 1.08999 * 113.47664 * 87.75895 * 22 12 11 45 45 H 1.08994 * 113.47488 * 218.22090 * 22 12 11 46 46 H 1.08999 * 109.47551 * 89.99527 * 24 23 7 47 47 H 1.08995 * 109.46890 * 209.99769 * 24 23 7 48 48 H 1.08999 * 109.46834 * 329.99384 * 24 23 7 49 49 H 1.08995 * 109.46888 * 270.21507 * 26 25 23 50 50 H 1.09003 * 109.46790 * 30.21404 * 26 25 23 51 51 H 1.08993 * 109.47311 * 150.21137 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 1.4447 2.5022 -0.0006 5 6 3.5805 1.1971 -0.0005 6 6 4.3340 2.5022 -0.0011 7 6 4.2717 0.0000 -0.0001 8 6 5.7787 -0.0001 -0.0001 9 8 6.2550 0.0004 1.3472 10 6 7.6796 0.0010 1.4600 11 6 8.2106 -0.6988 2.7190 12 7 9.2075 0.3820 2.8343 13 6 9.3686 0.8026 4.2325 14 6 10.5563 1.7231 4.3465 15 1 11.1335 1.9713 3.4681 16 6 10.9055 2.2494 5.5722 17 7 10.2024 1.9476 6.6418 18 14 12.3773 3.3910 5.7133 19 1 12.1607 4.5859 4.8584 20 1 12.5403 3.8161 7.1268 21 1 13.6013 2.6783 5.2669 22 6 8.2569 1.2585 2.1249 23 6 3.5805 -1.1972 -0.0049 24 6 4.3340 -2.5023 -0.0105 25 6 2.1981 -1.1972 0.0000 26 6 1.4446 -2.5023 0.0006 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.2631 2.8164 -1.0285 31 1 0.4922 2.3722 0.5132 32 1 2.0338 3.2621 0.5129 33 1 4.5157 2.8164 -1.0289 34 1 3.7450 3.2621 0.5125 35 1 5.2865 2.3721 0.5128 36 1 6.1420 0.8898 -0.5142 37 1 6.1420 -0.8902 -0.5136 38 1 8.1865 -0.2902 0.5401 39 1 8.6505 -1.6759 2.5197 40 1 7.4940 -0.7180 3.5401 41 1 9.5273 -0.0746 4.8599 42 1 8.4704 1.3260 4.5603 43 1 10.4484 2.3175 7.5041 44 1 7.5527 1.7617 2.7875 45 1 8.7361 1.9401 1.4222 46 1 4.5160 -2.8213 1.0158 47 1 3.7448 -3.2598 -0.5273 48 1 5.2862 -2.3698 -0.5241 49 1 1.2626 -2.8171 -1.0269 50 1 2.0339 -3.2618 0.5144 51 1 0.4924 -2.3718 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223321690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:51 Heat of formation + Delta-G solvation = -18.475858 kcal Electronic energy + Delta-G solvation = -26718.700917 eV Core-core repulsion = 23196.813118 eV Total energy + Delta-G solvation = -3521.887799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40690 -40.90903 -38.04309 -35.89611 -35.32297 -34.86288 -31.21106 -30.62424 -30.18180 -29.22589 -27.75832 -27.04046 -26.67942 -25.07104 -24.87107 -23.44760 -21.08084 -20.43472 -20.42125 -18.68038 -18.01447 -17.97178 -17.00336 -16.39628 -16.16784 -15.98929 -15.71570 -15.30045 -14.99253 -14.81692 -14.58905 -14.33985 -14.16848 -14.06225 -13.94231 -13.78694 -13.68912 -13.55181 -13.42156 -13.31198 -13.19874 -12.95752 -12.84933 -12.76821 -12.53122 -12.48614 -12.26602 -12.12745 -11.93453 -11.82591 -11.63201 -11.54881 -11.43657 -11.23411 -10.64301 -10.38087 -9.78191 -9.28107 -9.12463 -8.25166 -6.36618 0.32455 0.44785 1.38500 1.42774 1.50948 2.36590 2.45323 2.97547 3.06837 3.38610 3.46662 3.75697 3.80556 3.92709 3.98616 4.04542 4.09742 4.17748 4.34020 4.40524 4.42802 4.49802 4.55476 4.59697 4.62986 4.64610 4.67691 4.69832 4.70700 4.72779 4.74416 4.80736 4.82411 4.84962 4.91609 4.94959 5.01258 5.03813 5.07859 5.12693 5.13711 5.24351 5.45791 5.51543 5.52793 5.68023 5.68585 5.71725 5.83395 6.02707 6.19341 6.28163 6.37414 6.77137 7.33004 8.86316 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.002536 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.276840 B =11040.512784 C =11670.070421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.109 4.109 4 C -0.115 4.115 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.113 4.113 8 C 0.098 3.902 9 O -0.380 6.380 10 C 0.083 3.917 11 C -0.007 4.007 12 N -0.477 5.477 13 C 0.178 3.822 14 C -0.529 4.529 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.975 3.025 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.010 4.010 23 C -0.080 4.080 24 C -0.115 4.115 25 C -0.108 4.108 26 C -0.113 4.113 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.001 0.999 42 H -0.025 1.025 43 H 0.266 0.734 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 -5.504 -19.289 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.109 4.109 4 C -0.171 4.171 5 C -0.081 4.081 6 C -0.175 4.175 7 C -0.113 4.113 8 C 0.023 3.977 9 O -0.299 6.299 10 C 0.025 3.975 11 C -0.136 4.136 12 N -0.201 5.201 13 C 0.051 3.949 14 C -0.567 4.567 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.140 4.140 23 C -0.080 4.080 24 C -0.171 4.171 25 C -0.108 4.108 26 C -0.169 4.169 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.019 0.981 42 H -0.007 1.007 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.579 -5.563 -19.157 28.661 hybrid contribution 0.289 0.779 1.056 1.343 sum -20.290 -4.784 -18.101 27.609 Atomic orbital electron populations 1.20961 0.89428 1.03686 1.03170 1.19953 0.97329 0.91829 0.99605 1.19852 0.92759 0.96274 1.02057 1.20925 1.00081 0.93138 1.03004 1.19828 0.93779 0.95160 0.99380 1.20913 0.99783 0.94015 1.02821 1.19440 0.94189 0.93111 1.04574 1.21502 0.90653 1.01773 0.83806 1.88052 1.20368 1.94343 1.27114 1.23710 0.80734 0.94922 0.98183 1.24093 0.93884 0.98327 0.97268 1.68846 1.30975 1.05605 1.14653 1.19900 0.95326 0.94382 0.85329 1.21387 1.12978 1.27950 0.94354 0.92004 1.26008 1.00308 0.98443 0.95122 1.70086 1.41602 1.46049 0.99839 0.85356 0.78810 0.78752 0.77222 1.19128 1.20549 1.19077 1.24266 0.94028 0.97415 0.98246 1.19858 0.93731 0.95203 0.99178 1.20887 1.00087 0.93676 1.02492 1.19881 0.92813 0.96227 1.01921 1.20885 1.00061 0.92945 1.03027 0.90029 0.90385 0.90586 0.90177 0.90244 0.91340 0.89886 0.90457 0.92499 0.91772 0.90706 0.85771 0.88242 0.93065 0.98073 1.00720 0.92512 0.93376 0.89512 0.91572 0.89777 0.91039 0.90123 0.91226 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.20 71.24 0.66 -0.88 16 2 C -0.09 -1.75 5.88 -19.87 -0.12 -1.87 16 3 C -0.11 -2.38 5.88 -19.87 -0.12 -2.50 16 4 C -0.12 -1.83 9.20 71.23 0.66 -1.18 16 5 C -0.08 -2.01 5.88 -19.87 -0.12 -2.13 16 6 C -0.12 -2.62 8.79 71.23 0.63 -2.00 16 7 C -0.11 -2.91 5.51 -19.86 -0.11 -3.02 16 8 C 0.10 2.44 4.69 71.24 0.33 2.78 16 9 O -0.38 -12.08 10.36 -148.98 -1.54 -13.62 16 10 C 0.08 2.66 4.65 30.94 0.14 2.80 16 11 C -0.01 -0.25 7.52 83.58 0.63 0.38 16 12 N -0.48 -21.99 6.32 -932.90 -5.89 -27.88 16 13 C 0.18 10.07 4.57 85.56 0.39 10.46 16 14 C -0.53 -31.57 9.39 25.60 0.24 -31.33 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 16 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 17 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 18 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 C -0.01 -0.40 7.55 83.58 0.63 0.23 16 23 C -0.08 -1.86 5.88 -19.86 -0.12 -1.98 16 24 C -0.12 -2.19 8.78 71.24 0.63 -1.57 16 25 C -0.11 -2.25 5.88 -19.87 -0.12 -2.37 16 26 C -0.11 -1.61 8.78 71.24 0.63 -0.98 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.88 5.95 -2.39 -0.01 0.86 16 29 H 0.08 0.89 5.95 -2.39 -0.01 0.87 16 30 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.05 5.95 -2.39 -0.01 1.03 16 32 H 0.07 1.10 5.95 -2.38 -0.01 1.08 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.54 5.95 -2.38 -0.01 1.53 16 35 H 0.06 1.45 6.69 -2.38 -0.02 1.43 16 36 H 0.06 1.48 6.70 -2.38 -0.02 1.46 16 37 H 0.08 1.58 5.94 -2.39 -0.01 1.56 16 38 H 0.12 3.25 7.88 -2.39 -0.02 3.23 16 39 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.05 2.12 7.91 -2.39 -0.02 2.10 16 41 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 42 H -0.02 -1.53 7.30 -2.39 -0.02 -1.55 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.05 2.13 7.42 -2.39 -0.02 2.11 16 45 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.23 6.72 -2.39 -0.02 1.22 16 48 H 0.07 1.28 5.94 -2.39 -0.01 1.27 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.96 6.72 -2.39 -0.02 0.94 16 51 H 0.08 0.94 5.95 -2.39 -0.01 0.93 16 Total: -1.00 -71.55 390.41 1.12 -70.42 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.92 Total: 16.25 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 5.33 Total: -34.73 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.61 Total: -85.82 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.54 Total: -13.62 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.55 1.12 -70.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223321690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.949 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds