Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38239 * 119.99863 * 2 1 4 4 C 1.50697 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.38234 * 119.99601 * 180.02562 * 3 2 1 6 6 C 1.50698 * 119.99797 * 179.97438 * 5 3 2 7 7 C 1.38237 * 120.00289 * 359.97438 * 5 3 2 8 8 C 1.50698 * 119.99925 * 179.97438 * 7 5 3 9 9 O 1.42903 * 109.47194 * 90.00045 * 8 7 5 10 10 C 1.42902 * 114.00078 * 180.02562 * 9 8 7 11 11 H 1.08996 * 110.63804 * 26.85563 * 10 9 8 12 12 C 1.55155 * 110.72038 * 149.99762 * 10 9 8 13 13 C 1.54912 * 101.57968 * 154.04162 * 12 10 9 14 14 N 1.47426 * 104.83261 * 322.99067 * 13 12 10 15 15 C 1.36941 * 125.64875 * 203.86480 * 14 13 12 16 16 H 1.08001 * 120.00063 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99930 * 0.02562 * 15 14 13 18 18 N 1.31617 * 120.00219 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46974 * 59.99759 * 19 17 15 21 21 H 1.48495 * 109.47103 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46839 * 299.99961 * 19 17 15 23 23 C 1.47024 * 108.70449 * 24.12870 * 14 13 12 24 24 C 1.38237 * 119.99781 * 0.25186 * 7 5 3 25 25 C 1.50697 * 119.99660 * 179.72900 * 24 7 5 26 26 C 1.38234 * 119.99998 * 359.47975 * 24 7 5 27 27 C 1.50697 * 119.99725 * 180.27228 * 26 24 7 28 28 H 1.09001 * 109.46630 * 89.99676 * 1 2 3 29 29 H 1.08994 * 109.46801 * 209.99656 * 1 2 3 30 30 H 1.08996 * 109.46856 * 330.00151 * 1 2 3 31 31 H 1.08997 * 109.47057 * 270.02593 * 4 3 2 32 32 H 1.09004 * 109.46692 * 30.02038 * 4 3 2 33 33 H 1.09003 * 109.47148 * 150.01937 * 4 3 2 34 34 H 1.08997 * 109.47127 * 270.02019 * 6 5 3 35 35 H 1.08997 * 109.47384 * 30.01976 * 6 5 3 36 36 H 1.09001 * 109.47323 * 150.02069 * 6 5 3 37 37 H 1.08992 * 109.47127 * 330.00039 * 8 7 5 38 38 H 1.09000 * 109.47080 * 209.99557 * 8 7 5 39 39 H 1.08997 * 111.00368 * 35.97354 * 12 10 9 40 40 H 1.08992 * 111.03872 * 272.12819 * 12 10 9 41 41 H 1.09002 * 110.36496 * 204.15483 * 13 12 10 42 42 H 1.08997 * 110.36790 * 81.83118 * 13 12 10 43 43 H 0.97004 * 120.00482 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.88316 * 118.35549 * 23 14 13 45 45 H 1.09002 * 109.88101 * 239.52444 * 23 14 13 46 46 H 1.09003 * 109.47447 * 90.00595 * 25 24 7 47 47 H 1.09005 * 109.46868 * 210.00340 * 25 24 7 48 48 H 1.08998 * 109.47549 * 330.00177 * 25 24 7 49 49 H 1.08999 * 109.47027 * 270.26390 * 27 26 24 50 50 H 1.08999 * 109.47487 * 30.27229 * 27 26 24 51 51 H 1.09007 * 109.46966 * 150.27316 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 1.4447 2.5023 -0.0006 5 6 3.5805 1.1971 -0.0005 6 6 4.3340 2.5022 -0.0011 7 6 4.2717 0.0000 -0.0005 8 6 5.7787 0.0000 -0.0017 9 8 6.2561 0.0006 1.3452 10 6 7.6807 0.0013 1.4570 11 1 8.1347 0.4620 0.5796 12 6 8.1294 0.7275 2.7526 13 6 9.4988 0.0569 3.0266 14 7 9.3135 -1.3527 2.6365 15 6 10.0455 -2.4124 3.1018 16 1 9.8312 -3.4116 2.7524 17 6 11.0629 -2.2022 4.0224 18 7 11.3237 -0.9846 4.4485 19 14 12.0619 -3.6476 4.6566 20 1 12.7408 -4.3176 3.5183 21 1 13.0797 -3.1603 5.6219 22 1 11.1598 -4.6140 5.3332 23 6 8.2169 -1.4315 1.6604 24 6 3.5805 -1.1972 -0.0053 25 6 4.3340 -2.5022 -0.0114 26 6 2.1982 -1.1972 0.0009 27 6 1.4448 -2.5023 0.0019 28 1 -0.3632 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.2631 2.8165 -1.0284 32 1 0.4923 2.3721 0.5133 33 1 2.0338 3.2621 0.5130 34 1 4.5150 2.8168 -1.0289 35 1 3.7454 3.2619 0.5131 36 1 5.2868 2.3719 0.5120 37 1 6.1416 0.8897 -0.5162 38 1 6.1416 -0.8902 -0.5153 39 1 7.4316 0.5382 3.5682 40 1 8.2458 1.7975 2.5811 41 1 9.7508 0.1277 4.0847 42 1 10.2762 0.5197 2.4188 43 1 12.0350 -0.8376 5.0916 44 1 8.5898 -1.8254 0.7150 45 1 7.4239 -2.0730 2.0447 46 1 4.5163 -2.8214 1.0147 47 1 3.7446 -3.2596 -0.5282 48 1 5.2861 -2.3697 -0.5253 49 1 1.2626 -2.8175 -1.0255 50 1 2.0340 -3.2616 0.5160 51 1 0.4924 -2.3716 0.5160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223322931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = -25.806569 kcal Electronic energy + Delta-G solvation = -27195.569943 eV Core-core repulsion = 23673.364261 eV Total energy + Delta-G solvation = -3522.205682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31738 -39.80618 -37.66867 -35.89123 -35.31011 -34.06239 -31.18777 -30.61796 -30.23924 -29.34577 -28.74452 -27.57946 -26.28836 -25.06586 -24.83489 -22.12498 -21.79841 -20.51111 -20.41484 -18.99236 -18.11845 -17.78306 -16.77530 -16.44442 -16.07692 -15.69541 -15.55556 -15.24828 -15.07651 -14.57108 -14.40143 -14.32301 -14.23760 -13.97229 -13.81770 -13.60546 -13.55071 -13.47874 -13.39442 -13.18251 -13.04650 -12.95510 -12.85989 -12.64138 -12.54541 -12.40136 -12.14143 -12.06767 -11.96187 -11.83069 -11.77152 -11.55832 -11.40918 -11.34354 -10.76676 -10.45760 -9.27684 -9.11853 -8.93041 -7.79742 -5.25100 0.33389 0.45432 1.45483 1.49393 1.55834 2.43149 2.52010 3.02756 3.30971 3.69924 3.74361 3.79727 3.87270 3.95036 3.99489 4.07773 4.13664 4.16810 4.18495 4.37381 4.43293 4.55238 4.61387 4.62195 4.65103 4.69313 4.70971 4.72670 4.74949 4.76654 4.79142 4.83906 4.95056 4.98038 4.99755 5.02105 5.03705 5.06942 5.13608 5.15331 5.25575 5.42527 5.46103 5.52496 5.58291 5.68793 5.69793 5.75584 5.84360 6.20245 6.25425 6.33601 7.07555 7.73819 8.37874 9.22447 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002839 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.279352 B = 9860.827954 C =10782.483664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.107 4.107 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.098 3.902 9 O -0.378 6.378 10 C 0.092 3.908 11 H 0.083 0.917 12 C -0.125 4.125 13 C 0.156 3.844 14 N -0.624 5.624 15 C -0.245 4.245 16 H 0.079 0.921 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.117 3.883 24 C -0.082 4.082 25 C -0.115 4.115 26 C -0.108 4.108 27 C -0.114 4.114 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.077 0.923 42 H -0.003 1.003 43 H 0.249 0.751 44 H 0.026 0.974 45 H 0.023 0.977 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.251 5.435 -12.876 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.107 4.107 4 C -0.170 4.170 5 C -0.079 4.079 6 C -0.174 4.174 7 C -0.111 4.111 8 C 0.022 3.978 9 O -0.297 6.297 10 C 0.034 3.966 11 H 0.101 0.899 12 C -0.163 4.163 13 C 0.032 3.968 14 N -0.352 5.352 15 C -0.373 4.373 16 H 0.097 0.903 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.811 3.189 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.009 4.009 24 C -0.082 4.082 25 C -0.172 4.172 26 C -0.108 4.108 27 C -0.170 4.170 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.015 0.985 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.224 5.389 -12.594 26.963 hybrid contribution 1.333 -0.850 0.285 1.606 sum -21.891 4.539 -12.309 25.521 Atomic orbital electron populations 1.20961 0.89274 1.03759 1.03186 1.19957 0.97385 0.91735 0.99568 1.19870 0.92675 0.96313 1.01819 1.20926 1.00091 0.92921 1.03062 1.19832 0.93793 0.95058 0.99220 1.20920 0.99896 0.93730 1.02883 1.19403 0.93830 0.93283 1.04573 1.21456 0.90957 1.01219 0.84124 1.88015 1.20241 1.94839 1.26594 1.22967 0.80538 0.94517 0.98617 0.89907 1.22962 0.97284 0.99698 0.96376 1.21723 0.91665 0.82484 1.00977 1.44687 1.37678 1.04124 1.48676 1.19422 1.10633 0.87716 1.19559 0.90310 1.25673 1.00384 0.99607 1.00144 1.70024 1.33735 1.20304 1.35763 0.85079 0.77912 0.78123 0.77760 1.20270 1.21608 1.20341 1.21800 0.90268 0.96717 0.92104 1.19809 0.93867 0.94973 0.99526 1.20860 0.99911 0.94273 1.02124 1.19851 0.92559 0.96383 1.02011 1.20885 1.00105 0.93014 1.02977 0.90052 0.90512 0.90272 0.90196 0.90182 0.90930 0.90012 0.89887 0.92239 0.91406 0.92344 0.92204 0.89001 0.90547 0.98469 0.94108 0.95618 0.95912 0.92143 0.89751 0.91760 0.90182 0.91647 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.20 71.24 0.66 -0.89 16 2 C -0.09 -1.79 5.88 -19.86 -0.12 -1.90 16 3 C -0.11 -2.29 5.88 -19.87 -0.12 -2.41 16 4 C -0.11 -1.66 9.20 71.23 0.66 -1.00 16 5 C -0.08 -1.95 5.88 -19.87 -0.12 -2.07 16 6 C -0.12 -2.42 8.79 71.24 0.63 -1.79 16 7 C -0.11 -3.10 5.51 -19.87 -0.11 -3.21 16 8 C 0.10 2.82 4.68 71.24 0.33 3.15 16 9 O -0.38 -13.38 10.05 -148.98 -1.50 -14.88 16 10 C 0.09 3.46 3.44 31.78 0.11 3.57 16 11 H 0.08 2.78 7.82 -2.39 -0.02 2.76 16 12 C -0.12 -5.06 6.81 31.99 0.22 -4.84 16 13 C 0.16 8.04 5.88 86.86 0.51 8.56 16 14 N -0.62 -34.07 3.39 -691.97 -2.35 -36.42 16 15 C -0.24 -14.30 10.27 84.03 0.86 -13.43 16 16 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 17 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 18 N -0.95 -57.60 10.09 21.65 0.22 -57.39 16 19 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.12 5.26 7.02 86.73 0.61 5.87 16 24 C -0.08 -2.17 5.88 -19.87 -0.12 -2.29 16 25 C -0.12 -2.85 8.78 71.23 0.63 -2.22 16 26 C -0.11 -2.46 5.88 -19.87 -0.12 -2.58 16 27 C -0.11 -1.89 8.78 71.23 0.63 -1.26 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.90 5.95 -2.39 -0.01 0.88 16 30 H 0.08 0.88 5.95 -2.39 -0.01 0.87 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.95 5.95 -2.39 -0.01 0.93 16 33 H 0.07 1.00 5.95 -2.39 -0.01 0.99 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.43 5.95 -2.39 -0.01 1.42 16 36 H 0.06 1.39 6.69 -2.39 -0.02 1.38 16 37 H 0.07 1.72 6.67 -2.39 -0.02 1.70 16 38 H 0.06 1.64 5.94 -2.39 -0.01 1.62 16 39 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.08 4.45 5.89 -2.39 -0.01 4.43 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 1.67 6.72 -2.38 -0.02 1.65 16 48 H 0.06 1.61 5.94 -2.39 -0.01 1.60 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 50 H 0.06 1.12 6.72 -2.39 -0.02 1.10 16 51 H 0.08 1.11 5.95 -2.38 -0.01 1.09 16 Total: -1.00 -69.74 383.21 4.92 -64.81 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.92 Total: 17.41 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 5.60 Total: -22.10 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -2.13 Total: -93.80 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.50 Total: -14.88 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -69.74 4.92 -64.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223322931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.004 kcal (2) G-P(sol) polarization free energy of solvation -69.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds