Wall clock time and date at job start Tue Mar 31 2020 11:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 119.99948 * 2 1 4 4 C 1.50698 * 119.99923 * 359.97438 * 3 2 1 5 5 C 1.38237 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.50695 * 119.99766 * 179.97438 * 5 3 2 7 7 C 1.38237 * 119.99839 * 359.97438 * 5 3 2 8 8 C 1.50699 * 119.99758 * 180.02562 * 7 5 3 9 9 O 1.42903 * 109.47120 * 89.99875 * 8 7 5 10 10 C 1.42902 * 113.99935 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.77943 * 328.21280 * 10 9 8 12 12 C 1.55448 * 110.70807 * 205.00306 * 10 9 8 13 13 C 1.54905 * 101.45165 * 206.14636 * 12 10 9 14 14 N 1.47419 * 104.92834 * 37.00468 * 13 12 10 15 15 C 1.36940 * 125.65165 * 155.84166 * 14 13 12 16 16 H 1.08001 * 120.00359 * 179.97438 * 15 14 13 17 17 C 1.38813 * 119.99579 * 359.97016 * 15 14 13 18 18 N 1.31621 * 120.00215 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99909 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46988 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47095 * 119.99942 * 19 17 15 22 22 H 1.48497 * 109.46865 * 239.99918 * 19 17 15 23 23 C 1.47026 * 108.70576 * 335.81449 * 14 13 12 24 24 C 1.38234 * 120.00316 * 0.27611 * 7 5 3 25 25 C 1.50697 * 120.00163 * 179.72847 * 24 7 5 26 26 C 1.38237 * 119.99534 * 179.97438 * 2 1 3 27 27 C 1.50698 * 120.00313 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47024 * 90.00068 * 1 2 3 29 29 H 1.08997 * 109.47288 * 210.00009 * 1 2 3 30 30 H 1.09001 * 109.46877 * 330.00642 * 1 2 3 31 31 H 1.08997 * 109.47079 * 269.97546 * 4 3 2 32 32 H 1.09000 * 109.47222 * 29.98235 * 4 3 2 33 33 H 1.09007 * 109.46488 * 149.98065 * 4 3 2 34 34 H 1.08999 * 109.47606 * 269.97393 * 6 5 3 35 35 H 1.08999 * 109.47275 * 29.98137 * 6 5 3 36 36 H 1.09005 * 109.46579 * 149.98041 * 6 5 3 37 37 H 1.08998 * 109.47238 * 329.99909 * 8 7 5 38 38 H 1.09002 * 109.47225 * 209.99950 * 8 7 5 39 39 H 1.09002 * 111.11560 * 88.08951 * 12 10 9 40 40 H 1.09004 * 111.00873 * 324.15360 * 12 10 9 41 41 H 1.09002 * 110.36692 * 278.10842 * 13 12 10 42 42 H 1.08995 * 110.36664 * 155.89643 * 13 12 10 43 43 H 0.96996 * 120.00198 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.88266 * 120.47537 * 23 14 13 45 45 H 1.09000 * 109.88221 * 241.64354 * 23 14 13 46 46 H 1.09004 * 109.47114 * 89.99629 * 25 24 7 47 47 H 1.09000 * 109.47307 * 209.99407 * 25 24 7 48 48 H 1.08997 * 109.47261 * 330.00178 * 25 24 7 49 49 H 1.08997 * 109.46684 * 90.00405 * 27 26 2 50 50 H 1.08994 * 109.47067 * 210.00200 * 27 26 2 51 51 H 1.09002 * 109.47049 * 330.00550 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 1.4447 2.5022 -0.0006 5 6 3.5806 1.1971 0.0005 6 6 4.3341 2.5022 0.0000 7 6 4.2717 -0.0001 0.0016 8 6 5.7787 -0.0001 0.0028 9 8 6.2540 0.0005 1.3504 10 6 7.6784 -0.0001 1.4644 11 1 8.1327 -0.5376 0.6321 12 6 8.1210 -0.6140 2.8222 13 6 9.4920 0.0739 3.0384 14 7 9.3140 1.4447 2.5262 15 6 10.0464 2.5389 2.9028 16 1 9.8377 3.5046 2.4666 17 6 11.0569 2.4067 3.8453 18 7 11.3115 1.2297 4.3766 19 14 12.0555 3.8993 4.3596 20 1 11.5757 5.0944 3.6203 21 1 11.8962 4.1225 5.8191 22 1 13.4887 3.6673 4.0478 23 6 8.2204 1.4427 1.5435 24 6 3.5805 -1.1972 -0.0036 25 6 4.3340 -2.5023 -0.0086 26 6 2.1981 -1.1972 0.0005 27 6 1.4446 -2.5023 0.0017 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 1.2638 2.8169 -1.0284 32 1 0.4919 2.3719 0.5126 33 1 2.0335 3.2619 0.5137 34 1 4.5166 2.8160 -1.0278 35 1 3.7447 3.2622 0.5127 36 1 5.2861 2.3722 0.5146 37 1 6.1424 0.8896 -0.5112 38 1 6.1424 -0.8904 -0.5104 39 1 8.2342 -1.6955 2.7458 40 1 7.4222 -0.3509 3.6163 41 1 10.2690 -0.4435 2.4757 42 1 9.7428 0.0948 4.0989 43 1 12.0173 1.1374 5.0354 44 1 7.4292 2.1185 1.8680 45 1 8.5976 1.7510 0.5685 46 1 4.5152 -2.8212 1.0178 47 1 3.7451 -3.2599 -0.5258 48 1 5.2866 -2.3699 -0.5215 49 1 1.2626 -2.8176 -1.0257 50 1 2.0338 -3.2616 0.5158 51 1 0.4923 -2.3715 0.5157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223322932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:06 Heat of formation + Delta-G solvation = -26.170201 kcal Electronic energy + Delta-G solvation = -27211.652804 eV Core-core repulsion = 23689.431353 eV Total energy + Delta-G solvation = -3522.221451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31900 -39.80673 -37.66079 -35.89149 -35.30928 -34.05994 -31.19250 -30.62016 -30.23854 -29.32552 -28.76241 -27.58445 -26.29070 -25.06602 -24.83545 -22.12384 -21.80094 -20.50586 -20.41581 -18.99760 -18.09048 -17.80869 -16.78789 -16.44643 -16.14237 -15.68235 -15.50093 -15.24672 -15.06260 -14.58779 -14.37708 -14.34702 -14.24922 -13.97101 -13.83465 -13.62241 -13.55548 -13.49867 -13.32559 -13.19671 -13.07408 -12.94512 -12.87883 -12.70165 -12.54634 -12.34377 -12.14749 -11.99728 -11.95517 -11.83748 -11.78597 -11.56043 -11.40179 -11.33907 -10.78477 -10.47279 -9.27615 -9.11801 -8.93318 -7.80128 -5.25573 0.33419 0.45447 1.45662 1.47157 1.57612 2.42995 2.51647 3.02815 3.30667 3.69727 3.75523 3.77923 3.86675 3.95967 3.99530 4.07361 4.11944 4.16886 4.18777 4.37704 4.42716 4.57118 4.59726 4.61698 4.64220 4.68383 4.71089 4.73203 4.74422 4.76110 4.81862 4.83147 4.94546 4.97309 4.98856 5.01918 5.04024 5.08143 5.13786 5.15820 5.25186 5.42820 5.46246 5.52430 5.58113 5.68770 5.69793 5.75501 5.84351 6.20157 6.25364 6.33319 7.07425 7.73392 8.37337 9.22241 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.002855 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.932348 B = 9806.267003 C =10742.957595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.111 4.111 8 C 0.098 3.902 9 O -0.377 6.377 10 C 0.091 3.909 11 H 0.083 0.917 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.624 5.624 15 C -0.242 4.242 16 H 0.079 0.921 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.116 3.884 24 C -0.079 4.079 25 C -0.115 4.115 26 C -0.107 4.107 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.059 0.941 41 H -0.003 1.003 42 H 0.078 0.922 43 H 0.249 0.751 44 H 0.023 0.977 45 H 0.026 0.974 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.070 0.930 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.302 -6.025 -12.467 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.108 4.108 4 C -0.171 4.171 5 C -0.081 4.081 6 C -0.175 4.175 7 C -0.111 4.111 8 C 0.023 3.977 9 O -0.297 6.297 10 C 0.033 3.967 11 H 0.101 0.899 12 C -0.161 4.161 13 C 0.030 3.970 14 N -0.352 5.352 15 C -0.370 4.370 16 H 0.097 0.903 17 C -0.259 4.259 18 N -0.598 5.598 19 Si 0.811 3.189 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.010 4.010 24 C -0.079 4.079 25 C -0.171 4.171 26 C -0.107 4.107 27 C -0.169 4.169 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.015 0.985 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.282 -5.960 -12.200 26.953 hybrid contribution 1.356 0.864 0.235 1.625 sum -21.927 -5.096 -11.965 25.493 Atomic orbital electron populations 1.20962 0.89267 1.03764 1.03185 1.19956 0.97387 0.91729 0.99565 1.19842 0.92556 0.96388 1.02010 1.20924 1.00113 0.93082 1.02992 1.19799 0.93864 0.94956 0.99519 1.20903 0.99713 0.94280 1.02634 1.19398 0.93814 0.93288 1.04585 1.21439 0.90982 1.01183 0.84136 1.88014 1.20259 1.94857 1.26526 1.23035 0.80524 0.94581 0.98553 0.89947 1.22988 0.97244 1.00142 0.95738 1.21734 0.91672 0.82970 1.00588 1.44700 1.37938 1.05788 1.46738 1.19488 1.10778 0.88210 1.18553 0.90298 1.25675 1.00471 1.00066 0.99676 1.70032 1.34145 1.22974 1.32676 0.84936 0.77873 0.78560 0.77498 1.19187 1.21641 1.21593 1.21844 0.90323 0.96742 0.92118 1.19838 0.93797 0.95045 0.99227 1.20885 0.99937 0.93710 1.02595 1.19880 0.92657 0.96315 1.01824 1.20886 1.00090 0.92851 1.03040 0.90060 0.90253 0.90515 0.90241 0.90027 0.91414 0.90181 0.90235 0.92937 0.92718 0.91155 0.88942 0.92192 0.98462 0.90453 0.94129 0.95900 0.95646 0.91338 0.89635 0.91452 0.90163 0.91156 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.20 71.24 0.66 -0.89 16 2 C -0.09 -1.79 5.88 -19.86 -0.12 -1.90 16 3 C -0.11 -2.46 5.88 -19.87 -0.12 -2.58 16 4 C -0.12 -1.92 9.20 71.24 0.66 -1.26 16 5 C -0.08 -2.17 5.88 -19.87 -0.12 -2.29 16 6 C -0.12 -2.97 8.79 71.23 0.63 -2.35 16 7 C -0.11 -3.11 5.51 -19.87 -0.11 -3.22 16 8 C 0.10 2.84 4.72 71.24 0.34 3.18 16 9 O -0.38 -13.38 10.04 -148.98 -1.50 -14.87 16 10 C 0.09 3.43 3.40 31.88 0.11 3.54 16 11 H 0.08 2.77 7.89 -2.39 -0.02 2.75 16 12 C -0.12 -4.98 6.83 32.09 0.22 -4.76 16 13 C 0.16 7.98 5.88 86.85 0.51 8.49 16 14 N -0.62 -34.01 3.39 -692.01 -2.35 -36.36 16 15 C -0.24 -14.09 10.27 84.03 0.86 -13.23 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 18 N -0.95 -57.52 10.09 21.65 0.22 -57.30 16 19 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 C 0.12 5.19 7.02 86.73 0.61 5.80 16 24 C -0.08 -1.96 5.88 -19.87 -0.12 -2.07 16 25 C -0.12 -2.35 8.78 71.23 0.63 -1.72 16 26 C -0.11 -2.29 5.88 -19.86 -0.12 -2.41 16 27 C -0.11 -1.63 8.78 71.24 0.63 -1.01 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.88 5.95 -2.39 -0.01 0.87 16 30 H 0.08 0.90 5.95 -2.39 -0.01 0.89 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.10 5.95 -2.39 -0.01 1.09 16 33 H 0.07 1.15 5.95 -2.38 -0.01 1.14 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.76 5.95 -2.39 -0.01 1.75 16 36 H 0.05 1.56 6.69 -2.38 -0.02 1.54 16 37 H 0.05 1.56 6.70 -2.39 -0.02 1.55 16 38 H 0.07 1.79 5.91 -2.39 -0.01 1.77 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 41 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.08 4.50 5.87 -2.39 -0.01 4.48 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.08 1.34 6.72 -2.39 -0.02 1.32 16 48 H 0.07 1.36 5.94 -2.39 -0.01 1.35 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.98 6.72 -2.39 -0.02 0.96 16 51 H 0.08 0.95 5.95 -2.39 -0.01 0.94 16 Total: -1.00 -69.67 383.25 4.93 -64.74 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.92 Total: 17.31 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 5.61 Total: -22.08 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -2.13 Total: -93.66 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.50 Total: -14.87 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -69.67 4.93 -64.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223322932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.566 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds