Wall clock time and date at job start Tue Mar 31 2020 11:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47029 * 270.00350 * 3 2 1 5 5 H 1.48502 * 109.46888 * 30.00159 * 3 2 1 6 6 H 1.48494 * 109.46901 * 150.00357 * 3 2 1 7 7 C 1.37882 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47476 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47481 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.46728 * 180.02562 * 13 12 11 15 15 C 1.42899 * 113.99778 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.50770 * 30.07445 * 15 14 13 17 17 C 1.53122 * 109.50141 * 269.99746 * 15 14 13 18 18 C 1.53115 * 109.16030 * 182.40710 * 17 15 14 19 19 C 1.53039 * 109.27943 * 57.65062 * 18 17 15 20 20 N 1.46844 * 109.52852 * 300.82192 * 19 18 17 21 21 C 1.39665 * 111.00277 * 185.83741 * 20 19 18 22 22 C 1.38917 * 120.07598 * 123.67888 * 21 20 19 23 23 C 1.38103 * 119.92263 * 179.77053 * 22 21 20 24 24 C 1.38281 * 120.07903 * 0.50497 * 23 22 21 25 25 C 1.38289 * 120.14736 * 359.74516 * 24 23 22 26 26 C 1.38103 * 120.07680 * 0.02562 * 25 24 23 27 27 C 1.46855 * 111.19445 * 61.73922 * 20 19 18 28 28 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 30 30 H 1.09004 * 109.47103 * 299.99834 * 9 7 2 31 31 H 1.09004 * 109.47368 * 59.99937 * 10 9 7 32 32 H 1.08996 * 109.47261 * 300.00321 * 10 9 7 33 33 H 1.09000 * 109.46925 * 60.00213 * 11 10 9 34 34 H 1.08996 * 109.47340 * 300.00521 * 11 10 9 35 35 H 1.09000 * 109.46866 * 60.00179 * 12 11 10 36 36 H 1.09001 * 109.46611 * 300.00296 * 12 11 10 37 37 H 1.09000 * 109.47486 * 60.00167 * 13 12 11 38 38 H 1.09001 * 109.47362 * 299.99445 * 13 12 11 39 39 H 1.09002 * 109.52173 * 302.31277 * 17 15 14 40 40 H 1.09002 * 109.52258 * 62.50111 * 17 15 14 41 41 H 1.09001 * 109.50884 * 177.59392 * 18 17 15 42 42 H 1.08999 * 109.50490 * 297.67666 * 18 17 15 43 43 H 1.09005 * 109.45909 * 60.84209 * 19 18 17 44 44 H 1.09003 * 109.46016 * 180.81309 * 19 18 17 45 45 H 1.08003 * 120.03491 * 0.02562 * 22 21 20 46 46 H 1.08002 * 119.95868 * 180.25511 * 23 22 21 47 47 H 1.08000 * 119.92760 * 179.76729 * 24 23 22 48 48 H 1.08005 * 119.96139 * 180.02562 * 25 24 23 49 49 H 1.07994 * 120.03753 * 180.02562 * 26 25 24 50 50 H 1.09003 * 109.45772 * 178.24650 * 27 20 19 51 51 H 1.09000 * 109.46034 * 58.27736 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 6 6.0615 -4.0792 -0.0015 13 6 7.5915 -4.0791 -0.0021 14 8 8.0678 -5.4264 -0.0019 15 6 9.4923 -5.5392 -0.0030 16 1 9.9258 -4.6815 0.5111 17 6 10.0007 -5.5802 -1.4468 18 6 11.5211 -5.7615 -1.4393 19 6 11.8734 -7.0429 -0.6804 20 7 11.3663 -6.9542 0.6948 21 6 11.7837 -8.0497 1.4540 22 6 12.4911 -7.8508 2.6329 23 6 12.8981 -8.9362 3.3835 24 6 12.6114 -10.2201 2.9575 25 6 11.9120 -10.4218 1.7817 26 6 11.4978 -9.3409 1.0286 27 6 9.9034 -6.8272 0.7141 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 3.6579 -3.1507 -0.8907 32 1 3.6585 -3.1502 0.8892 33 1 5.9155 -2.1225 0.8873 34 1 5.9141 -2.1231 -0.8926 35 1 5.6975 -4.5937 -0.8908 36 1 5.6988 -4.5922 0.8892 37 1 7.9552 -3.5647 0.8874 38 1 7.9545 -3.5659 -0.8926 39 1 9.5369 -6.4147 -1.9728 40 1 9.7477 -4.6463 -1.9487 41 1 11.8841 -5.8343 -2.4645 42 1 11.9871 -4.9073 -0.9480 43 1 11.4186 -7.8980 -1.1808 44 1 12.9561 -7.1674 -0.6608 45 1 12.7188 -6.8483 2.9641 46 1 13.4445 -8.7821 4.3023 47 1 12.9342 -11.0673 3.5445 48 1 11.6893 -11.4260 1.4520 49 1 10.9512 -9.4991 0.1108 50 1 9.5553 -6.7949 1.7466 51 1 9.4579 -7.6832 0.2073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:28 Heat of formation + Delta-G solvation = -42.783622 kcal Electronic energy + Delta-G solvation = -25377.882349 eV Core-core repulsion = 21854.940486 eV Total energy + Delta-G solvation = -3522.941863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66913 -38.90482 -37.31127 -35.38796 -33.66133 -32.76486 -31.32871 -31.08372 -30.00635 -29.31610 -26.72082 -24.91311 -23.40743 -23.14554 -22.85519 -21.73904 -20.99556 -20.01137 -19.99798 -17.96916 -16.80741 -16.55276 -16.18396 -15.94744 -15.68432 -15.44760 -15.17560 -14.69587 -14.25894 -14.19755 -14.10819 -13.83009 -13.65574 -13.49679 -13.09792 -12.83207 -12.73427 -12.29432 -12.16786 -11.95870 -11.92965 -11.64848 -11.54814 -11.39392 -11.26094 -11.05589 -10.89063 -10.84331 -10.61338 -10.44399 -9.86042 -9.65896 -9.58183 -9.44878 -9.34056 -9.14255 -9.11938 -8.88569 -8.50203 -6.00725 -3.98187 0.87005 1.00378 3.04418 3.32824 3.35467 3.39928 3.44224 3.81102 4.36254 4.48409 4.48560 4.54636 4.55302 4.58217 4.71655 4.82639 4.92408 5.00715 5.06917 5.07450 5.13394 5.15442 5.22601 5.32688 5.33386 5.36538 5.44669 5.48160 5.53647 5.59751 5.63012 5.65139 5.67259 5.80905 5.91722 5.98127 6.01462 6.11065 6.12296 6.22482 6.31838 6.38955 6.42987 6.48719 6.68975 6.78340 6.98873 7.00222 7.16839 7.37321 7.49964 7.84456 8.58907 9.04927 9.62191 11.12918 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.025527 B = 0.001698 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.608389 B =16485.075987 C =16889.022283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.064 3.936 14 O -0.383 6.383 15 C 0.094 3.906 16 H 0.069 0.931 17 C -0.145 4.145 18 C -0.114 4.114 19 C 0.057 3.943 20 N -0.501 5.501 21 C 0.091 3.909 22 C -0.095 4.095 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.111 4.111 26 C -0.148 4.148 27 C 0.066 3.934 28 H 0.262 0.738 29 H 0.014 0.986 30 H 0.010 0.990 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.083 0.917 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.704 -19.426 1.792 37.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.012 4.012 14 O -0.302 6.302 15 C 0.036 3.964 16 H 0.087 0.913 17 C -0.182 4.182 18 C -0.152 4.152 19 C -0.069 4.069 20 N -0.224 5.224 21 C -0.002 4.002 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.168 4.168 27 C -0.060 4.060 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.102 0.898 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 31.590 -19.012 1.983 36.923 hybrid contribution 0.114 0.413 -0.449 0.621 sum 31.703 -18.599 1.534 36.788 Atomic orbital electron populations 1.69924 1.06303 1.26796 1.51437 1.25056 0.94742 0.99202 0.94664 0.86756 0.80356 0.83596 0.78440 1.20361 1.21434 1.19030 1.21202 0.89713 0.94428 1.50453 0.91089 1.19590 0.97005 0.92589 0.96093 1.21441 0.91691 0.99666 1.01159 1.21618 0.98179 0.94290 1.01503 1.21581 0.92109 0.98567 1.03165 1.22675 0.95969 0.82617 0.99938 1.87875 1.19785 1.27498 1.95024 1.21933 0.81740 0.97785 0.94975 0.91258 1.22120 0.95649 1.03001 0.97475 1.21552 0.95711 0.97873 1.00097 1.22206 1.00252 0.97587 0.86872 1.59423 1.10947 1.39453 1.12546 1.18766 0.98360 0.88411 0.94712 1.21083 0.97163 0.99470 0.93654 1.21141 1.00006 0.92433 0.99757 1.21203 0.99078 0.97241 0.96677 1.21048 0.98224 0.98649 0.95083 1.21691 1.01135 0.93303 1.00676 1.22055 0.85426 0.96983 1.01554 0.92818 0.96732 0.97178 0.92822 0.92769 0.92416 0.92443 0.91340 0.91307 0.93357 0.93470 0.91255 0.91220 0.90790 0.90792 0.94190 0.90339 0.85289 0.85687 0.86013 0.86079 0.86324 0.89829 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 10 C -0.10 -2.05 5.15 -26.74 -0.14 -2.19 16 11 C -0.12 -1.88 5.21 -26.73 -0.14 -2.02 16 12 C -0.12 -1.62 5.58 -26.73 -0.15 -1.77 16 13 C 0.06 0.78 5.75 37.16 0.21 0.99 16 14 O -0.38 -4.79 9.99 -35.23 -0.35 -5.14 16 15 C 0.09 0.95 2.77 -26.65 -0.07 0.87 16 16 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 17 C -0.14 -1.25 5.62 -26.61 -0.15 -1.40 16 18 C -0.11 -0.80 6.09 -26.65 -0.16 -0.96 16 19 C 0.06 0.42 5.06 -3.83 -0.02 0.40 16 20 N -0.50 -4.34 4.62 -171.14 -0.79 -5.13 16 21 C 0.09 0.78 4.68 -83.79 -0.39 0.39 16 22 C -0.09 -0.75 9.97 -39.38 -0.39 -1.14 16 23 C -0.11 -0.77 10.04 -39.61 -0.40 -1.17 16 24 C -0.12 -0.81 10.04 -39.55 -0.40 -1.20 16 25 C -0.11 -0.78 10.04 -39.61 -0.40 -1.18 16 26 C -0.15 -1.18 8.74 -39.38 -0.34 -1.52 16 27 C 0.07 0.64 4.87 -3.83 -0.02 0.62 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.55 8.09 -51.93 -0.42 0.14 16 38 H 0.05 0.53 7.93 -51.93 -0.41 0.12 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.61 7.93 -51.93 -0.41 0.19 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.29 7.15 -51.93 -0.37 -0.08 16 44 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 45 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 46 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 48 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 49 H 0.12 0.88 7.13 -52.49 -0.37 0.51 16 50 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 51 H 0.05 0.47 7.79 -51.93 -0.40 0.07 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -31.77 402.19 -11.97 -43.73 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -9.49 Total: -3.78 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.50 Total: -25.52 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.02 Total: -32.82 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.35 Total: -5.14 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.77 -11.97 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.951 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds