Wall clock time and date at job start Tue Mar 31 2020 11:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47104 * 270.00228 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00451 * 3 2 1 6 6 H 1.48506 * 109.46930 * 150.00366 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46969 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.47079 * 179.97438 * 13 12 11 15 15 C 1.42899 * 113.99778 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.50666 * 330.08139 * 15 14 13 17 17 C 1.53118 * 109.50113 * 90.19966 * 15 14 13 18 18 C 1.53124 * 109.16041 * 177.59358 * 17 15 14 19 19 C 1.53030 * 109.27706 * 302.34547 * 18 17 15 20 20 N 1.46846 * 109.52644 * 59.18146 * 19 18 17 21 21 C 1.39672 * 111.00378 * 174.16183 * 20 19 18 22 22 C 1.38910 * 120.07751 * 123.93313 * 21 20 19 23 23 C 1.38111 * 119.92478 * 179.76833 * 22 21 20 24 24 C 1.38284 * 120.07165 * 0.50829 * 23 22 21 25 25 C 1.38284 * 120.15014 * 359.74026 * 24 23 22 26 26 C 1.38098 * 120.08089 * 0.02562 * 25 24 23 27 27 C 1.46846 * 111.19502 * 298.25602 * 20 19 18 28 28 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 31 31 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 32 32 H 1.09000 * 109.46870 * 300.00068 * 10 9 7 33 33 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 34 34 H 1.09000 * 109.46986 * 299.99746 * 11 10 9 35 35 H 1.09004 * 109.47298 * 59.99824 * 12 11 10 36 36 H 1.09004 * 109.47552 * 299.99695 * 12 11 10 37 37 H 1.09004 * 109.46930 * 59.99996 * 13 12 11 38 38 H 1.09000 * 109.47312 * 299.99939 * 13 12 11 39 39 H 1.09001 * 109.52761 * 297.49479 * 17 15 14 40 40 H 1.08997 * 109.52317 * 57.69210 * 17 15 14 41 41 H 1.09001 * 109.50560 * 182.40151 * 18 17 15 42 42 H 1.09001 * 109.50494 * 62.28873 * 18 17 15 43 43 H 1.08996 * 109.46985 * 299.16157 * 19 18 17 44 44 H 1.09007 * 109.45462 * 179.18669 * 19 18 17 45 45 H 1.07999 * 120.03761 * 359.97438 * 22 21 20 46 46 H 1.07998 * 119.96175 * 180.25191 * 23 22 21 47 47 H 1.07998 * 119.92116 * 179.72622 * 24 23 22 48 48 H 1.08012 * 119.95743 * 180.02562 * 25 24 23 49 49 H 1.07993 * 120.04345 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.46574 * 301.72326 * 27 20 19 51 51 H 1.08999 * 109.45599 * 181.74751 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0005 13 6 1.7093 -7.4750 -0.0005 14 8 2.6379 -8.5613 -0.0005 15 6 2.0233 -9.8513 -0.0011 16 1 1.0627 -9.7970 0.5110 17 6 1.8085 -10.3145 -1.4447 18 6 1.2052 -11.7219 -1.4364 19 6 2.1368 -12.6664 -0.6735 20 7 2.3097 -12.1805 0.7014 21 6 3.0477 -13.0884 1.4642 22 6 4.2073 -12.6759 2.1081 23 6 4.9321 -13.5751 2.8654 24 6 4.5102 -14.8875 2.9744 25 6 3.3591 -15.3028 2.3305 26 6 2.6270 -14.4077 1.5756 27 6 2.9311 -10.8501 0.7202 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 0.8537 -5.0446 -0.8913 34 1 0.8532 -5.0451 0.8886 35 1 3.1004 -6.0923 0.8899 36 1 3.1017 -6.0923 -0.8901 37 1 1.0830 -7.5329 -0.8908 38 1 1.0823 -7.5326 0.8892 39 1 1.1275 -9.6294 -1.9496 40 1 2.7645 -10.3311 -1.9680 41 1 1.0895 -12.0743 -2.4613 42 1 0.2314 -11.6976 -0.9473 43 1 3.1059 -12.7010 -1.1710 44 1 1.7030 -13.6662 -0.6534 45 1 4.5400 -11.6522 2.0193 46 1 5.8316 -13.2540 3.3696 47 1 5.0813 -15.5897 3.5636 48 1 3.0322 -16.3285 2.4181 49 1 1.7278 -14.7326 1.0733 50 1 3.8966 -10.8931 0.2161 51 1 3.0743 -10.5308 1.7525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:31 Heat of formation + Delta-G solvation = -44.609535 kcal Electronic energy + Delta-G solvation = -25353.595846 eV Core-core repulsion = 21830.574806 eV Total energy + Delta-G solvation = -3523.021040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80323 -38.85401 -37.28889 -35.27869 -33.72634 -32.83803 -31.70832 -30.71046 -29.70983 -29.26408 -26.39626 -25.05798 -24.02362 -23.28988 -21.99089 -21.68191 -21.07746 -20.12687 -19.99980 -18.17821 -16.69567 -16.17139 -16.11288 -15.99451 -15.62467 -15.43769 -14.99718 -14.68667 -14.46601 -14.35536 -14.05172 -13.86455 -13.67103 -13.36334 -13.16186 -12.79080 -12.53460 -12.27744 -12.16149 -11.80897 -11.64045 -11.54035 -11.40845 -11.31611 -11.15577 -11.00368 -10.88688 -10.86008 -10.45473 -10.41151 -10.35958 -10.05952 -9.62062 -9.56416 -9.28352 -9.23550 -8.98859 -8.31412 -8.20913 -5.96684 -3.98722 1.03056 1.05934 2.98186 3.33879 3.39822 3.42496 3.43732 3.84215 4.31865 4.37462 4.48699 4.53134 4.59228 4.62224 4.76792 4.82461 4.87071 5.03609 5.08620 5.09718 5.13770 5.19288 5.24104 5.26627 5.36763 5.38913 5.40879 5.50093 5.51793 5.56860 5.68403 5.71655 5.73376 5.81127 5.90519 5.93798 6.06987 6.09867 6.22265 6.29907 6.40610 6.42864 6.51909 6.60051 6.83782 6.92195 6.97506 7.17002 7.20343 7.72269 7.87898 8.04336 8.47652 9.08780 9.65105 11.14665 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.001640 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.478185 B =17073.825887 C =17776.776031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.064 3.936 14 O -0.383 6.383 15 C 0.093 3.907 16 H 0.070 0.930 17 C -0.145 4.145 18 C -0.117 4.117 19 C 0.056 3.944 20 N -0.487 5.487 21 C 0.115 3.885 22 C -0.171 4.171 23 C -0.093 4.093 24 C -0.149 4.149 25 C -0.097 4.097 26 C -0.142 4.142 27 C 0.056 3.944 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.055 0.945 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -34.022 1.077 34.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.012 4.012 14 O -0.301 6.301 15 C 0.034 3.966 16 H 0.088 0.912 17 C -0.183 4.183 18 C -0.155 4.155 19 C -0.069 4.069 20 N -0.203 5.203 21 C 0.018 3.982 22 C -0.192 4.192 23 C -0.112 4.112 24 C -0.168 4.168 25 C -0.115 4.115 26 C -0.162 4.162 27 C -0.071 4.071 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.073 0.927 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.923 -33.758 1.217 34.137 hybrid contribution 0.770 0.933 -0.256 1.236 sum 5.693 -32.824 0.961 33.328 Atomic orbital electron populations 1.69971 1.06047 1.26495 1.51090 1.25037 0.94852 0.99239 0.95420 0.86603 0.79858 0.83521 0.78070 1.20694 1.21243 1.19898 1.21301 0.93064 0.91213 1.50269 0.92725 1.19115 0.94085 0.91466 0.97117 1.21612 0.99045 0.93757 1.00292 1.21587 0.97729 0.94433 1.01588 1.21598 0.99044 0.91780 1.02946 1.22701 0.91978 0.86519 1.00035 1.87866 1.34075 1.13178 1.95029 1.21928 0.96166 0.83486 0.94979 0.91214 1.22132 1.02021 0.96706 0.97473 1.21590 0.99326 0.94297 1.00254 1.22294 0.99511 0.99130 0.85934 1.58879 1.47069 1.02048 1.12288 1.18927 0.90968 0.91730 0.96608 1.21411 0.94710 1.00974 1.02093 1.21044 0.99244 0.93353 0.97517 1.21088 0.97827 0.96212 1.01695 1.21014 0.94918 0.99269 0.96333 1.20782 1.00922 0.92064 1.02441 1.22189 0.96209 0.86816 1.01918 0.93077 0.96694 0.96679 0.93406 0.93434 0.92433 0.92412 0.91460 0.91484 0.93395 0.93294 0.91032 0.91127 0.90511 0.90707 0.93607 0.89808 0.85339 0.85997 0.86234 0.85954 0.85805 0.92681 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -1.96 5.21 -26.73 -0.14 -2.10 16 12 C -0.12 -1.67 5.58 -26.73 -0.15 -1.82 16 13 C 0.06 0.80 5.75 37.16 0.21 1.01 16 14 O -0.38 -4.80 9.99 -35.23 -0.35 -5.15 16 15 C 0.09 0.94 2.77 -26.65 -0.07 0.87 16 16 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 17 C -0.15 -1.26 5.62 -26.61 -0.15 -1.41 16 18 C -0.12 -0.81 6.09 -26.65 -0.16 -0.97 16 19 C 0.06 0.41 5.26 -3.84 -0.02 0.39 16 20 N -0.49 -4.32 4.70 -171.15 -0.80 -5.12 16 21 C 0.12 1.04 5.64 -83.78 -0.47 0.57 16 22 C -0.17 -1.51 8.82 -39.38 -0.35 -1.86 16 23 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 24 C -0.15 -1.07 10.04 -39.55 -0.40 -1.47 16 25 C -0.10 -0.68 10.04 -39.62 -0.40 -1.08 16 26 C -0.14 -1.13 9.16 -39.38 -0.36 -1.49 16 27 C 0.06 0.53 3.80 -3.83 -0.01 0.51 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.57 7.95 -51.93 -0.41 0.15 16 38 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.51 6.71 -51.92 -0.35 0.16 16 45 H 0.13 1.07 5.81 -52.49 -0.30 0.77 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 49 H 0.12 0.82 7.15 -52.49 -0.38 0.45 16 50 H 0.05 0.53 7.72 -51.93 -0.40 0.13 16 51 H 0.09 0.88 6.99 -51.93 -0.36 0.51 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -31.40 401.45 -12.27 -43.67 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -9.33 Total: -3.86 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.56 Total: -25.91 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: -0.07 Total: -31.76 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.35 Total: -5.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.40 -12.27 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.936 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds