Wall clock time and date at job start Tue Mar 31 2020 11:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47104 * 270.00228 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00451 * 3 2 1 6 6 H 1.48506 * 109.46930 * 150.00366 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46969 * 179.97438 * 12 11 10 14 14 O 1.42905 * 109.47079 * 179.97438 * 13 12 11 15 15 C 1.42899 * 113.99778 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.50666 * 330.08139 * 15 14 13 17 17 C 1.53118 * 109.50113 * 90.19966 * 15 14 13 18 18 C 1.53124 * 109.16041 * 177.59358 * 17 15 14 19 19 C 1.53030 * 109.27706 * 302.34547 * 18 17 15 20 20 N 1.46846 * 109.52644 * 59.18146 * 19 18 17 21 21 C 1.39672 * 111.00378 * 174.16183 * 20 19 18 22 22 C 1.38910 * 120.07751 * 123.93313 * 21 20 19 23 23 C 1.38111 * 119.92478 * 179.76833 * 22 21 20 24 24 C 1.38284 * 120.07165 * 0.50829 * 23 22 21 25 25 C 1.38284 * 120.15014 * 359.74026 * 24 23 22 26 26 C 1.38098 * 120.08089 * 0.02562 * 25 24 23 27 27 C 1.46846 * 111.19502 * 298.25602 * 20 19 18 28 28 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 31 31 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 32 32 H 1.09000 * 109.46870 * 300.00068 * 10 9 7 33 33 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 34 34 H 1.09000 * 109.46986 * 299.99746 * 11 10 9 35 35 H 1.09004 * 109.47298 * 59.99824 * 12 11 10 36 36 H 1.09004 * 109.47552 * 299.99695 * 12 11 10 37 37 H 1.09004 * 109.46930 * 59.99996 * 13 12 11 38 38 H 1.09000 * 109.47312 * 299.99939 * 13 12 11 39 39 H 1.09001 * 109.52761 * 297.49479 * 17 15 14 40 40 H 1.08997 * 109.52317 * 57.69210 * 17 15 14 41 41 H 1.09001 * 109.50560 * 182.40151 * 18 17 15 42 42 H 1.09001 * 109.50494 * 62.28873 * 18 17 15 43 43 H 1.08996 * 109.46985 * 299.16157 * 19 18 17 44 44 H 1.09007 * 109.45462 * 179.18669 * 19 18 17 45 45 H 1.07999 * 120.03761 * 359.97438 * 22 21 20 46 46 H 1.07998 * 119.96175 * 180.25191 * 23 22 21 47 47 H 1.07998 * 119.92116 * 179.72622 * 24 23 22 48 48 H 1.08012 * 119.95743 * 180.02562 * 25 24 23 49 49 H 1.07993 * 120.04345 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.46574 * 301.72326 * 27 20 19 51 51 H 1.08999 * 109.45599 * 181.74751 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0005 13 6 1.7093 -7.4750 -0.0005 14 8 2.6379 -8.5613 -0.0005 15 6 2.0233 -9.8513 -0.0011 16 1 1.0627 -9.7970 0.5110 17 6 1.8085 -10.3145 -1.4447 18 6 1.2052 -11.7219 -1.4364 19 6 2.1368 -12.6664 -0.6735 20 7 2.3097 -12.1805 0.7014 21 6 3.0477 -13.0884 1.4642 22 6 4.2073 -12.6759 2.1081 23 6 4.9321 -13.5751 2.8654 24 6 4.5102 -14.8875 2.9744 25 6 3.3591 -15.3028 2.3305 26 6 2.6270 -14.4077 1.5756 27 6 2.9311 -10.8501 0.7202 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6044 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 0.8537 -5.0446 -0.8913 34 1 0.8532 -5.0451 0.8886 35 1 3.1004 -6.0923 0.8899 36 1 3.1017 -6.0923 -0.8901 37 1 1.0830 -7.5329 -0.8908 38 1 1.0823 -7.5326 0.8892 39 1 1.1275 -9.6294 -1.9496 40 1 2.7645 -10.3311 -1.9680 41 1 1.0895 -12.0743 -2.4613 42 1 0.2314 -11.6976 -0.9473 43 1 3.1059 -12.7010 -1.1710 44 1 1.7030 -13.6662 -0.6534 45 1 4.5400 -11.6522 2.0193 46 1 5.8316 -13.2540 3.3696 47 1 5.0813 -15.5897 3.5636 48 1 3.0322 -16.3285 2.4181 49 1 1.7278 -14.7326 1.0733 50 1 3.8966 -10.8931 0.2161 51 1 3.0743 -10.5308 1.7525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:30 Heat of formation + Delta-G solvation = -60.027181 kcal Electronic energy + Delta-G solvation = -25354.264405 eV Core-core repulsion = 21830.574806 eV Total energy + Delta-G solvation = -3523.689599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44534 -39.62126 -38.09020 -36.81374 -34.91394 -34.26907 -32.54697 -31.93219 -30.69376 -29.90913 -28.08385 -25.75697 -25.20361 -24.45077 -22.62420 -22.41653 -22.32662 -21.72653 -20.81857 -18.82701 -18.42640 -17.46170 -17.04999 -16.77794 -16.52607 -16.34100 -16.08327 -15.81704 -15.67580 -15.19215 -14.69617 -14.67892 -14.53462 -14.40213 -14.31695 -13.85991 -13.70635 -13.50779 -13.38448 -13.14361 -12.83560 -12.76590 -12.41160 -12.32575 -12.25894 -12.18196 -11.99043 -11.90877 -11.77009 -11.65702 -11.60107 -11.34209 -11.30694 -10.97767 -10.69838 -10.55397 -10.44237 -9.86010 -8.82830 -8.20261 -6.31566 0.44680 0.48430 1.39346 1.40983 1.52218 2.22761 2.40954 2.80301 3.10067 3.12418 3.65181 3.68652 3.89700 3.94777 4.01040 4.06965 4.08986 4.13815 4.21975 4.29152 4.34392 4.39638 4.41577 4.45556 4.51502 4.54749 4.60579 4.64288 4.71595 4.75020 4.77877 4.87867 4.90210 4.95892 5.00139 5.06244 5.11123 5.14651 5.27625 5.30175 5.30812 5.32405 5.39327 5.52022 5.55379 5.66249 5.78258 5.84256 5.86905 5.95045 6.25346 6.27151 6.32001 6.85747 7.37664 8.91458 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.001640 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.478185 B =17073.825887 C =17776.776031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.107 4.107 12 C -0.107 4.107 13 C 0.069 3.931 14 O -0.398 6.398 15 C 0.091 3.909 16 H 0.069 0.931 17 C -0.143 4.143 18 C -0.110 4.110 19 C 0.056 3.944 20 N -0.491 5.491 21 C 0.098 3.902 22 C -0.189 4.189 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.099 4.099 26 C -0.150 4.150 27 C 0.062 3.938 28 H 0.264 0.736 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.136 0.864 50 H 0.049 0.951 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -35.364 0.963 35.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.008 4.008 14 O -0.317 6.317 15 C 0.033 3.967 16 H 0.087 0.913 17 C -0.181 4.181 18 C -0.148 4.148 19 C -0.069 4.069 20 N -0.207 5.207 21 C 0.001 3.999 22 C -0.210 4.210 23 C -0.121 4.121 24 C -0.173 4.173 25 C -0.118 4.118 26 C -0.170 4.170 27 C -0.065 4.065 28 H 0.072 0.928 29 H 0.010 0.990 30 H 0.009 0.991 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.142 0.858 46 H 0.153 0.847 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.153 0.847 50 H 0.067 0.933 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.644 -35.121 1.101 35.589 hybrid contribution 0.541 1.295 -0.193 1.417 sum 6.185 -33.826 0.908 34.399 Atomic orbital electron populations 1.70100 1.07786 1.27748 1.51708 1.26009 0.95817 1.03416 0.94708 0.85435 0.78632 0.78361 0.78541 1.19683 1.20609 1.18832 1.21760 0.93572 0.92632 1.50539 0.92313 1.19054 0.94566 0.93257 0.94777 1.21447 0.98021 0.93798 1.00458 1.21432 0.97870 0.93362 1.01768 1.21425 0.98342 0.91784 1.02923 1.22567 0.91669 0.85764 1.00764 1.87828 1.34611 1.14017 1.95213 1.22053 0.96011 0.82558 0.96113 0.91331 1.22106 1.01896 0.97859 0.96204 1.21574 0.98925 0.93007 1.01301 1.22372 0.99513 0.99901 0.85143 1.58939 1.46958 1.01680 1.13142 1.19116 0.91354 0.92354 0.97113 1.21518 0.95320 1.01166 1.02969 1.21294 0.99697 0.93709 0.97448 1.21407 0.98028 0.96272 1.01583 1.21347 0.94609 1.00274 0.95545 1.20998 1.01499 0.91734 1.02750 1.22060 0.95872 0.87345 1.01198 0.92773 0.98995 0.99052 0.93238 0.93160 0.92219 0.92351 0.91565 0.91448 0.92513 0.92767 0.91050 0.91656 0.88685 0.90664 0.94006 0.88389 0.85807 0.84694 0.84194 0.83630 0.84658 0.93303 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.09 9.11 25.60 0.23 -31.85 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.10 -4.19 5.15 30.59 0.16 -4.04 16 11 C -0.11 -3.58 5.21 30.59 0.16 -3.42 16 12 C -0.11 -2.98 5.58 30.59 0.17 -2.81 16 13 C 0.07 1.66 5.75 71.98 0.41 2.07 16 14 O -0.40 -9.76 9.99 -148.98 -1.49 -11.25 16 15 C 0.09 1.80 2.77 30.65 0.08 1.88 16 16 H 0.07 1.37 7.79 -2.39 -0.02 1.35 16 17 C -0.14 -2.35 5.62 30.68 0.17 -2.17 16 18 C -0.11 -1.35 6.09 30.65 0.19 -1.17 16 19 C 0.06 0.74 5.26 86.32 0.45 1.20 16 20 N -0.49 -8.47 4.70 -695.41 -3.27 -11.74 16 21 C 0.10 1.73 5.64 38.22 0.22 1.94 16 22 C -0.19 -3.34 8.82 22.40 0.20 -3.15 16 23 C -0.10 -1.53 10.04 22.25 0.22 -1.31 16 24 C -0.15 -1.96 10.04 22.29 0.22 -1.74 16 25 C -0.10 -1.22 10.04 22.25 0.22 -1.00 16 26 C -0.15 -2.19 9.16 22.40 0.21 -1.98 16 27 C 0.06 1.19 3.80 86.33 0.33 1.52 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.27 7.95 -2.38 -0.02 1.25 16 38 H 0.05 1.25 8.09 -2.39 -0.02 1.23 16 39 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.10 1.02 6.71 -2.38 -0.02 1.01 16 45 H 0.12 2.18 5.81 -2.91 -0.02 2.16 16 46 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 48 H 0.15 1.04 8.06 -2.90 -0.02 1.02 16 49 H 0.14 1.56 7.15 -2.91 -0.02 1.54 16 50 H 0.05 0.97 7.72 -2.39 -0.02 0.95 16 51 H 0.08 1.64 6.99 -2.39 -0.02 1.62 16 Total: -1.00 -67.38 401.45 2.67 -64.71 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.86 Total: 13.13 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 4.26 Total: -44.42 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -2.98 Total: -69.22 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.49 Total: -11.25 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.38 2.67 -64.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.678 kcal (2) G-P(sol) polarization free energy of solvation -67.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds