Wall clock time and date at job start Tue Mar 31 2020 11:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48506 * 109.47056 * 240.00285 * 3 2 1 5 5 H 1.48504 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47191 * 120.00290 * 3 2 1 7 7 C 1.37875 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47353 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47212 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47228 * 180.02562 * 12 11 10 14 14 O 1.42894 * 109.46854 * 179.97438 * 13 12 11 15 15 C 1.42906 * 113.99986 * 179.97438 * 14 13 12 16 16 H 1.09006 * 110.27122 * 332.09095 * 15 14 13 17 17 C 1.54596 * 110.39354 * 94.22991 * 15 14 13 18 18 C 1.54937 * 102.92088 * 140.91617 * 17 15 14 19 19 N 1.48529 * 103.23040 * 322.59341 * 18 17 15 20 20 C 1.46897 * 111.00551 * 159.71792 * 19 18 17 21 21 C 1.50706 * 109.46900 * 52.59764 * 20 19 18 22 22 C 1.38233 * 120.00109 * 269.72834 * 21 20 19 23 23 C 1.38239 * 119.99759 * 179.74218 * 22 21 20 24 24 C 1.38234 * 119.99962 * 0.55517 * 23 22 21 25 25 C 1.38238 * 120.00082 * 359.69846 * 24 23 22 26 26 C 1.38235 * 120.00108 * 0.02562 * 25 24 23 27 27 C 1.47904 * 105.82158 * 39.20175 * 19 18 17 28 28 H 0.96997 * 119.99958 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46942 * 59.99954 * 9 7 2 30 30 H 1.09000 * 109.47480 * 300.00109 * 9 7 2 31 31 H 1.08996 * 109.46720 * 60.00095 * 10 9 7 32 32 H 1.09000 * 109.46960 * 300.00456 * 10 9 7 33 33 H 1.09002 * 109.47592 * 59.99821 * 11 10 9 34 34 H 1.09000 * 109.47220 * 300.00003 * 11 10 9 35 35 H 1.09002 * 109.47231 * 60.00100 * 12 11 10 36 36 H 1.09005 * 109.47027 * 299.99600 * 12 11 10 37 37 H 1.09002 * 109.46941 * 59.99912 * 13 12 11 38 38 H 1.09005 * 109.46782 * 299.99740 * 13 12 11 39 39 H 1.08999 * 110.72561 * 259.28115 * 17 15 14 40 40 H 1.09004 * 110.72161 * 22.38343 * 17 15 14 41 41 H 1.08992 * 110.66766 * 204.14909 * 18 17 15 42 42 H 1.09006 * 110.66405 * 81.02619 * 18 17 15 43 43 H 1.09000 * 109.46743 * 292.60716 * 20 19 18 44 44 H 1.09000 * 109.47313 * 172.59899 * 20 19 18 45 45 H 1.08004 * 119.99934 * 0.02562 * 22 21 20 46 46 H 1.07999 * 119.99953 * 180.27297 * 23 22 21 47 47 H 1.08001 * 120.00280 * 179.72089 * 24 23 22 48 48 H 1.08000 * 120.00578 * 179.97438 * 25 24 23 49 49 H 1.07999 * 120.00165 * 179.97438 * 26 25 24 50 50 H 1.08992 * 109.91668 * 94.02518 * 27 19 18 51 51 H 1.09000 * 109.91936 * 215.12239 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 6 2.4748 -6.1499 -0.0031 13 6 1.7098 -7.4750 -0.0044 14 8 2.6384 -8.5610 -0.0056 15 6 2.0240 -9.8512 -0.0063 16 1 1.0460 -9.8040 0.4728 17 6 1.8882 -10.3825 -1.4517 18 6 2.2156 -11.8892 -1.2993 19 7 3.2964 -11.9008 -0.2805 20 6 3.4133 -13.2234 0.3480 21 6 3.5496 -14.2771 -0.7207 22 6 2.4218 -14.8853 -1.2396 23 6 2.5465 -15.8480 -2.2237 24 6 3.7996 -16.2109 -2.6808 25 6 4.9277 -15.6065 -2.1582 26 6 4.8028 -14.6396 -1.1782 27 6 2.9235 -10.8721 0.7147 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5566 -0.8904 30 1 0.6248 -2.5571 0.8896 31 1 2.8727 -3.6046 0.8877 32 1 2.8714 -3.6038 -0.8922 33 1 0.8534 -5.0442 -0.8922 34 1 0.8542 -5.0454 0.8877 35 1 3.1015 -6.0926 0.8869 36 1 3.1014 -6.0917 -0.8932 37 1 1.0834 -7.5320 -0.8946 38 1 1.0829 -7.5334 0.8854 39 1 0.8716 -10.2439 -1.8198 40 1 2.6056 -9.8939 -2.1112 41 1 2.5716 -12.3029 -2.2427 42 1 1.3441 -12.4379 -0.9419 43 1 2.5222 -13.4228 0.9433 44 1 4.2925 -13.2432 0.9920 45 1 1.4430 -14.6049 -0.8793 46 1 1.6652 -16.3200 -2.6322 47 1 3.8974 -16.9663 -3.4464 48 1 5.9068 -15.8902 -2.5150 49 1 5.6841 -14.1677 -0.7696 50 1 2.3771 -11.3326 1.5377 51 1 3.8193 -10.3799 1.0933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224372660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:38 Heat of formation + Delta-G solvation = -59.376662 kcal Electronic energy + Delta-G solvation = -24924.013724 eV Core-core repulsion = 21400.352333 eV Total energy + Delta-G solvation = -3523.661391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85538 -39.75733 -38.16449 -36.76095 -34.85506 -33.74308 -32.01962 -31.77997 -30.94147 -29.39453 -27.93624 -26.33026 -25.08591 -23.55180 -22.74987 -22.40796 -21.97997 -21.56173 -21.51542 -18.44529 -17.97577 -17.66625 -17.10637 -16.92874 -16.52281 -16.39185 -16.12726 -15.64023 -15.40610 -15.32294 -14.76244 -14.52615 -14.27490 -14.16364 -14.09150 -13.83935 -13.55496 -13.37945 -13.06541 -13.02785 -12.96184 -12.78901 -12.61307 -12.46066 -12.39004 -12.27528 -11.96868 -11.82775 -11.80898 -11.78079 -11.57289 -11.33714 -11.30680 -10.97392 -10.54375 -10.47792 -9.79263 -9.75470 -9.34181 -8.19508 -6.30868 0.42149 0.52474 1.39861 1.43180 1.51157 2.41270 2.60338 2.78665 3.13118 3.18304 3.56351 3.67602 3.88301 3.94932 4.02251 4.04003 4.15904 4.17160 4.22460 4.28596 4.32629 4.37168 4.42380 4.47454 4.53891 4.59565 4.62001 4.69215 4.76835 4.78816 4.83181 4.86103 4.88888 4.97420 4.99889 5.10005 5.12616 5.13374 5.19408 5.30887 5.31946 5.40241 5.55914 5.56562 5.64685 5.69613 5.78988 5.83983 5.87512 5.99540 6.13824 6.26846 6.34113 6.86159 7.38338 8.92002 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.042085 B = 0.001437 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.165458 B =19476.363001 C =19569.689588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.106 4.106 12 C -0.108 4.108 13 C 0.067 3.933 14 O -0.394 6.394 15 C 0.075 3.925 16 H 0.081 0.919 17 C -0.146 4.146 18 C 0.047 3.953 19 N -0.522 5.522 20 C 0.086 3.914 21 C -0.092 4.092 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.115 4.115 27 C 0.040 3.960 28 H 0.264 0.736 29 H -0.009 1.009 30 H -0.008 1.008 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.125 0.875 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 -36.846 -1.991 37.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.010 4.010 14 O -0.313 6.313 15 C 0.017 3.983 16 H 0.099 0.901 17 C -0.184 4.184 18 C -0.080 4.080 19 N -0.247 5.247 20 C -0.041 4.041 21 C -0.093 4.093 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.133 4.133 27 C -0.088 4.088 28 H 0.072 0.928 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.146 0.854 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.153 0.847 49 H 0.143 0.857 50 H 0.088 0.912 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.436 -36.590 -2.198 37.056 hybrid contribution -0.797 0.931 0.317 1.266 sum 4.640 -35.658 -1.880 36.008 Atomic orbital electron populations 1.70090 1.07777 1.27812 1.51655 1.25994 0.95803 1.03368 0.94674 0.85504 0.78300 0.78074 0.79185 1.19212 1.20659 1.19176 1.21733 0.93564 0.92660 1.50657 0.92347 1.19048 0.94547 0.93221 0.94775 1.21450 0.98038 0.93874 1.00416 1.21427 0.97849 0.93324 1.01769 1.21427 0.98349 0.91997 1.02795 1.22564 0.91724 0.85940 1.00746 1.87942 1.34325 1.14020 1.95041 1.23074 0.96209 0.83172 0.95885 0.90058 1.23031 1.02535 0.95818 0.97061 1.23115 0.92943 0.95504 0.96471 1.64867 1.43164 1.04523 1.12167 1.21272 1.02329 0.86401 0.94098 1.19827 0.93788 0.97284 0.98364 1.21263 0.98264 0.97016 0.97467 1.21411 0.98346 0.97711 0.97181 1.21474 0.92632 1.00288 1.00273 1.21432 0.99710 0.96737 0.96978 1.21234 0.97308 0.97375 0.97411 1.22920 0.99654 0.92267 0.93937 0.92769 0.99045 0.98976 0.93199 0.93311 0.92319 0.92183 0.91533 0.91801 0.92768 0.92372 0.89541 0.91337 0.90509 0.92234 0.92705 0.89434 0.85382 0.84400 0.84400 0.84672 0.85726 0.91189 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -4.23 5.15 30.59 0.16 -4.08 16 11 C -0.11 -3.56 5.21 30.59 0.16 -3.40 16 12 C -0.11 -3.04 5.58 30.60 0.17 -2.87 16 13 C 0.07 1.58 5.78 71.98 0.42 2.00 16 14 O -0.39 -9.76 9.94 -148.98 -1.48 -11.24 16 15 C 0.07 1.40 3.47 31.47 0.11 1.51 16 16 H 0.08 1.27 7.81 -2.38 -0.02 1.26 16 17 C -0.15 -2.55 6.81 31.80 0.22 -2.33 16 18 C 0.05 0.73 4.97 86.65 0.43 1.16 16 19 N -0.52 -8.94 5.39 -887.59 -4.78 -13.73 16 20 C 0.09 1.18 5.19 85.56 0.44 1.63 16 21 C -0.09 -1.33 4.59 -19.86 -0.09 -1.42 16 22 C -0.12 -1.54 8.36 22.27 0.19 -1.35 16 23 C -0.13 -1.48 10.05 22.27 0.22 -1.26 16 24 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 25 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 26 C -0.11 -1.68 9.70 22.27 0.22 -1.47 16 27 C 0.04 0.68 6.51 86.44 0.56 1.25 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.25 8.10 -2.38 -0.02 1.24 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.47 8.08 -2.38 -0.02 1.45 16 41 H 0.08 1.31 7.74 -2.39 -0.02 1.29 16 42 H 0.06 0.75 7.11 -2.38 -0.02 0.73 16 43 H 0.05 0.64 7.75 -2.39 -0.02 0.62 16 44 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 45 H 0.13 1.27 7.41 -2.91 -0.02 1.24 16 46 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 48 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 49 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 50 H 0.07 0.94 7.57 -2.39 -0.02 0.92 16 51 H 0.08 1.62 7.97 -2.39 -0.02 1.60 16 Total: -1.00 -67.76 407.82 1.39 -66.37 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.85 Total: 12.59 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 4.49 Total: -43.58 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -4.50 Total: -71.17 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.48 Total: -11.24 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.76 1.39 -66.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224372660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.990 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds