Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47069 * 270.00253 * 3 2 1 5 5 H 1.48507 * 109.47049 * 29.99874 * 3 2 1 6 6 H 1.48497 * 109.47389 * 149.99725 * 3 2 1 7 7 C 1.37875 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47317 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47095 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47095 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47095 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.47165 * 180.02562 * 13 12 11 15 15 C 1.42900 * 114.00554 * 180.02562 * 14 13 12 16 16 C 1.53116 * 109.52410 * 149.99647 * 15 14 13 17 17 C 1.53035 * 109.27620 * 177.56206 * 16 15 14 18 18 N 1.46855 * 109.52301 * 300.82119 * 17 16 15 19 19 C 1.39676 * 110.99902 * 185.83835 * 18 17 16 20 20 C 1.38906 * 120.07135 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.92343 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.07382 * 0.28047 * 21 20 19 23 23 C 1.38286 * 120.14755 * 359.44532 * 22 21 20 24 24 C 1.38112 * 120.07587 * 0.55318 * 23 22 21 25 25 C 1.46849 * 111.19593 * 61.74571 * 18 17 16 26 26 C 1.53041 * 109.52056 * 298.25550 * 25 18 17 27 27 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 28 28 H 1.09010 * 109.47457 * 59.99386 * 9 7 2 29 29 H 1.09002 * 109.47098 * 299.99524 * 9 7 2 30 30 H 1.08999 * 109.46845 * 60.00111 * 10 9 7 31 31 H 1.09002 * 109.47157 * 300.00111 * 10 9 7 32 32 H 1.08999 * 109.46998 * 60.00431 * 11 10 9 33 33 H 1.09002 * 109.47394 * 300.00192 * 11 10 9 34 34 H 1.08999 * 109.46845 * 60.00337 * 12 11 10 35 35 H 1.09002 * 109.47157 * 300.00337 * 12 11 10 36 36 H 1.08999 * 109.46998 * 60.00431 * 13 12 11 37 37 H 1.08997 * 109.47375 * 299.99708 * 13 12 11 38 38 H 1.09001 * 109.51480 * 29.87080 * 15 14 13 39 39 H 1.09005 * 109.50279 * 57.62260 * 16 15 14 40 40 H 1.09001 * 109.54124 * 297.52156 * 16 15 14 41 41 H 1.09008 * 109.46354 * 180.80902 * 17 16 15 42 42 H 1.08993 * 109.45683 * 60.83204 * 17 16 15 43 43 H 1.07999 * 120.03932 * 0.04675 * 20 19 18 44 44 H 1.08002 * 119.96028 * 179.97438 * 21 20 19 45 45 H 1.08001 * 119.92357 * 179.69823 * 22 21 20 46 46 H 1.08002 * 119.96005 * 180.25011 * 23 22 21 47 47 H 1.07998 * 120.03717 * 179.70130 * 24 23 22 48 48 H 1.08995 * 109.46185 * 58.27117 * 25 18 17 49 49 H 1.08997 * 109.45953 * 178.24444 * 25 18 17 50 50 H 1.09000 * 109.50381 * 299.23776 * 26 25 18 51 51 H 1.09001 * 109.50327 * 179.12024 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7096 -7.4750 0.0018 14 8 2.6382 -8.5612 0.0018 15 6 2.0238 -9.8513 0.0024 16 6 2.9318 -10.8509 -0.7192 17 6 2.2972 -12.2423 -0.6623 18 7 2.1156 -12.6419 0.7391 19 6 1.6605 -13.9594 0.8290 20 6 1.4253 -14.5312 2.0728 21 6 0.9759 -15.8343 2.1581 22 6 0.7656 -16.5716 1.0073 23 6 0.9934 -16.0035 -0.2328 24 6 1.4428 -14.7009 -0.3253 25 6 1.2093 -11.7232 1.4399 26 6 1.8114 -10.3162 1.4457 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 0.8535 -5.0450 -0.8886 33 1 0.8539 -5.0445 0.8914 34 1 3.1018 -6.0922 0.8901 35 1 3.1007 -6.0923 -0.8899 36 1 1.0821 -7.5330 -0.8875 37 1 1.0840 -7.5324 0.8925 38 1 1.0627 -9.7971 -0.5090 39 1 3.9064 -10.8751 -0.2316 40 1 3.0528 -10.5484 -1.7594 41 1 2.9483 -12.9592 -1.1629 42 1 1.3289 -12.2204 -1.1622 43 1 1.5933 -13.9573 2.9722 44 1 0.7932 -16.2797 3.1250 45 1 0.4188 -17.5921 1.0770 46 1 0.8243 -16.5808 -1.1298 47 1 1.6251 -14.2594 -1.2939 48 1 0.2461 -11.7039 0.9301 49 1 1.0702 -12.0629 2.4662 50 1 2.7683 -10.3320 1.9675 51 1 1.1313 -9.6314 1.9523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224375888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = -60.464321 kcal Electronic energy + Delta-G solvation = -25157.207311 eV Core-core repulsion = 21633.498756 eV Total energy + Delta-G solvation = -3523.708555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40325 -39.64680 -38.07887 -36.83013 -34.93215 -33.78840 -32.63246 -31.90299 -31.34899 -29.64415 -28.11378 -25.55203 -24.91978 -24.70864 -22.64765 -22.42889 -22.29898 -21.73077 -20.79815 -18.73983 -18.43658 -17.56289 -17.04333 -16.80949 -16.54478 -16.47210 -16.09390 -15.82127 -15.39399 -15.09558 -14.87456 -14.68946 -14.51545 -14.38451 -14.12546 -13.86301 -13.59055 -13.45799 -13.25117 -13.05708 -12.82872 -12.80958 -12.44693 -12.37795 -12.30790 -12.22159 -12.17946 -11.94929 -11.79842 -11.66918 -11.46889 -11.33762 -11.30149 -10.96614 -10.66649 -10.55221 -10.40804 -9.84724 -8.78795 -8.20100 -6.31375 0.46315 0.49664 1.39629 1.41142 1.52428 2.40791 2.57212 2.63218 2.96556 3.12691 3.68601 3.70619 3.91189 3.98207 4.03427 4.08583 4.11207 4.16787 4.21886 4.26329 4.31863 4.36951 4.40651 4.45445 4.50942 4.57878 4.60069 4.65221 4.73038 4.73896 4.77563 4.82510 4.89216 4.98077 5.01761 5.08108 5.13259 5.16360 5.21806 5.30527 5.31252 5.35211 5.39995 5.52975 5.55713 5.67529 5.78490 5.86071 5.87099 6.02650 6.26269 6.30728 6.35343 6.85915 7.37948 8.91640 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.047277 B = 0.001475 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.107029 B =18979.441708 C =19160.095109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.106 4.106 12 C -0.108 4.108 13 C 0.066 3.934 14 O -0.397 6.397 15 C 0.084 3.916 16 C -0.111 4.111 17 C 0.059 3.941 18 N -0.500 5.500 19 C 0.099 3.901 20 C -0.157 4.157 21 C -0.102 4.102 22 C -0.156 4.156 23 C -0.101 4.101 24 C -0.185 4.185 25 C 0.067 3.933 26 C -0.136 4.136 27 H 0.264 0.736 28 H -0.009 1.009 29 H -0.009 1.009 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.046 0.954 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 -36.141 0.806 36.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.010 4.010 14 O -0.317 6.317 15 C 0.026 3.974 16 C -0.149 4.149 17 C -0.068 4.068 18 N -0.215 5.215 19 C 0.001 3.999 20 C -0.177 4.177 21 C -0.120 4.120 22 C -0.175 4.175 23 C -0.120 4.120 24 C -0.206 4.206 25 C -0.058 4.058 26 C -0.174 4.174 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.153 0.847 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.089 0.911 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.104 -35.878 1.038 35.955 hybrid contribution -0.704 1.142 -0.258 1.366 sum 1.401 -34.735 0.780 34.772 Atomic orbital electron populations 1.70094 1.07789 1.27749 1.51737 1.25993 0.95798 1.03383 0.94695 0.85446 0.78659 0.78396 0.78543 1.19699 1.20602 1.18814 1.21757 0.93565 0.92637 1.50522 0.92334 1.19056 0.94560 0.93255 0.94772 1.21450 0.98026 0.93834 1.00445 1.21433 0.97870 0.93375 1.01735 1.21425 0.98336 0.91912 1.02866 1.22557 0.91757 0.86017 1.00652 1.87900 1.34467 1.14119 1.95168 1.22259 0.96425 0.82995 0.95711 1.21642 0.99435 0.92365 1.01434 1.22249 1.00843 0.96419 0.87296 1.59037 1.46054 1.00706 1.15697 1.19137 0.95899 0.90438 0.94422 1.20998 1.03793 0.96599 0.96296 1.21315 0.97490 0.93552 0.99657 1.21400 1.02603 1.01064 0.92456 1.21324 0.97300 0.94647 0.98685 1.21542 1.04431 0.96612 0.97967 1.22155 0.92894 0.91055 0.99746 1.22083 1.02339 0.95531 0.97484 0.92774 0.99023 0.99020 0.93253 0.93188 0.92284 0.92308 0.91636 0.91527 0.92655 0.92745 0.91689 0.91155 0.89648 0.88586 0.92758 0.85496 0.84185 0.84348 0.84269 0.84659 0.93529 0.89065 0.91086 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.12 4.97 29.85 0.15 1.26 16 10 C -0.10 -4.20 5.15 30.59 0.16 -4.04 16 11 C -0.11 -3.55 5.21 30.59 0.16 -3.39 16 12 C -0.11 -2.99 5.58 30.59 0.17 -2.82 16 13 C 0.07 1.57 5.75 71.98 0.41 1.98 16 14 O -0.40 -9.55 9.99 -148.98 -1.49 -11.04 16 15 C 0.08 1.54 2.68 30.67 0.08 1.62 16 16 C -0.11 -1.79 5.75 30.64 0.18 -1.61 16 17 C 0.06 0.80 4.15 86.32 0.36 1.16 16 18 N -0.50 -8.01 4.70 -695.38 -3.27 -11.28 16 19 C 0.10 1.58 5.64 38.21 0.22 1.80 16 20 C -0.16 -2.34 9.16 22.40 0.21 -2.14 16 21 C -0.10 -1.27 10.04 22.25 0.22 -1.04 16 22 C -0.16 -1.81 10.04 22.29 0.22 -1.59 16 23 C -0.10 -1.22 10.04 22.25 0.22 -1.00 16 24 C -0.18 -2.60 8.82 22.40 0.20 -2.40 16 25 C 0.07 0.99 5.26 86.33 0.45 1.45 16 26 C -0.14 -2.31 5.72 30.65 0.18 -2.13 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 37 H 0.05 1.20 7.96 -2.39 -0.02 1.18 16 38 H 0.07 1.10 7.79 -2.39 -0.02 1.08 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.16 6.98 -2.38 -0.02 1.14 16 42 H 0.05 0.67 7.74 -2.39 -0.02 0.65 16 43 H 0.13 1.71 7.15 -2.91 -0.02 1.69 16 44 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 45 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 46 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 47 H 0.14 1.53 5.81 -2.91 -0.02 1.52 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.09 1.23 6.70 -2.39 -0.02 1.21 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.08 1.26 7.96 -2.39 -0.02 1.24 16 Total: -1.00 -67.41 401.48 2.69 -64.72 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.86 Total: 12.28 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 4.28 Total: -44.26 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -2.98 Total: -68.65 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.49 Total: -11.04 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.41 2.69 -64.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.255 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds