Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47357 * 240.00226 * 3 2 1 5 5 H 1.48497 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47274 * 120.00242 * 3 2 1 7 7 C 1.37882 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99519 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00491 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47181 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46868 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47048 * 179.97438 * 12 11 10 14 14 C 1.42897 * 114.00335 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.50837 * 29.91482 * 14 13 12 16 16 C 1.53123 * 109.53260 * 269.82216 * 14 13 12 17 17 C 1.53123 * 109.16001 * 182.38420 * 16 14 13 18 18 C 1.53036 * 109.27788 * 57.65365 * 17 16 14 19 19 N 1.46842 * 109.52190 * 300.81892 * 18 17 16 20 20 C 1.46907 * 110.99676 * 185.84074 * 19 18 17 21 21 C 1.50695 * 109.47035 * 293.95450 * 20 19 18 22 22 C 1.38236 * 119.99770 * 269.72373 * 21 20 19 23 23 C 1.38236 * 119.99751 * 179.79094 * 22 21 20 24 24 C 1.38240 * 120.00087 * 0.44289 * 23 22 21 25 25 C 1.38229 * 119.99813 * 359.81072 * 24 23 22 26 26 C 1.38232 * 120.00059 * 90.00123 * 21 20 19 27 27 C 1.46848 * 111.20069 * 61.74451 * 19 18 17 28 28 H 0.96995 * 120.00131 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46860 * 59.99650 * 9 7 2 30 30 H 1.09002 * 109.47067 * 300.00252 * 9 7 2 31 31 H 1.08994 * 109.46992 * 59.99546 * 10 9 7 32 32 H 1.09006 * 109.47043 * 299.99642 * 10 9 7 33 33 H 1.08995 * 109.47194 * 59.99934 * 11 10 9 34 34 H 1.08999 * 109.46321 * 299.99777 * 11 10 9 35 35 H 1.08997 * 109.47597 * 59.99942 * 12 11 10 36 36 H 1.08994 * 109.47736 * 299.99661 * 12 11 10 37 37 H 1.09000 * 109.52311 * 62.47613 * 16 14 13 38 38 H 1.09007 * 109.52076 * 302.28726 * 16 14 13 39 39 H 1.09000 * 109.50367 * 297.70910 * 17 16 14 40 40 H 1.09006 * 109.50264 * 177.59249 * 17 16 14 41 41 H 1.09002 * 109.46126 * 60.83950 * 18 17 16 42 42 H 1.09000 * 109.45813 * 180.81566 * 18 17 16 43 43 H 1.08999 * 109.47091 * 53.95650 * 20 19 18 44 44 H 1.09004 * 109.46632 * 173.95624 * 20 19 18 45 45 H 1.07993 * 120.00483 * 0.02562 * 22 21 20 46 46 H 1.08004 * 120.00322 * 180.28212 * 23 22 21 47 47 H 1.07998 * 119.99947 * 179.83894 * 24 23 22 48 48 H 1.07994 * 120.00270 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00109 * 359.97438 * 26 21 20 50 50 H 1.09003 * 109.46014 * 58.27448 * 27 19 18 51 51 H 1.08991 * 109.46260 * 178.24823 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4993 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4744 -6.1501 -0.0018 13 8 1.7599 -7.3876 -0.0018 14 6 2.5997 -8.5437 -0.0018 15 1 3.5341 -8.3148 0.5105 16 6 2.8970 -8.9606 -1.4449 17 6 3.7476 -10.2338 -1.4352 18 6 3.0039 -11.3324 -0.6724 19 7 2.7438 -10.8856 0.7020 20 6 2.1548 -11.9661 1.5043 21 6 0.7855 -12.2990 0.9703 22 6 -0.3272 -11.6453 1.4656 23 6 -1.5828 -11.9476 0.9727 24 6 -1.7267 -12.9101 -0.0090 25 6 -0.6145 -13.5676 -0.5006 26 6 0.6416 -13.2622 -0.0108 27 6 1.8894 -9.6914 0.7195 28 1 -0.4850 0.8400 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6247 -2.5572 0.8897 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6045 -0.8906 33 1 0.8538 -5.0447 -0.8913 34 1 0.8533 -5.0451 0.8886 35 1 3.1011 -6.0928 0.8881 36 1 3.1010 -6.0920 -0.8918 37 1 3.4414 -8.1626 -1.9498 38 1 1.9606 -9.1521 -1.9690 39 1 4.7001 -10.0314 -0.9453 40 1 3.9267 -10.5596 -2.4599 41 1 2.0579 -11.5440 -1.1707 42 1 3.6133 -12.2359 -0.6512 43 1 2.7914 -12.8491 1.4478 44 1 2.0716 -11.6440 2.5423 45 1 -0.2153 -10.8957 2.2349 46 1 -2.4518 -11.4336 1.3564 47 1 -2.7079 -13.1482 -0.3923 48 1 -0.7269 -14.3198 -1.2672 49 1 1.5106 -13.7758 -0.3949 50 1 0.9485 -9.9106 0.2147 51 1 1.6893 -9.4031 1.7513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -46.615091 kcal Electronic energy + Delta-G solvation = -26035.285501 eV Core-core repulsion = 22512.177494 eV Total energy + Delta-G solvation = -3523.108008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40885 -38.90454 -37.26634 -34.71426 -33.82089 -32.31786 -31.34820 -30.92644 -30.18478 -28.33797 -26.75432 -24.75727 -23.54084 -23.18684 -22.36761 -21.69275 -21.43610 -20.14662 -19.75362 -17.14183 -16.73658 -16.22510 -16.00711 -15.78710 -15.64359 -15.42772 -14.96162 -14.60997 -14.44713 -14.13986 -14.05882 -13.74964 -13.56777 -13.14560 -12.99867 -12.76955 -12.65423 -12.42016 -12.01079 -11.72778 -11.63160 -11.54419 -11.34849 -11.26759 -11.18122 -10.92837 -10.89070 -10.69478 -10.54784 -10.50522 -10.34621 -9.63941 -9.33928 -9.27847 -9.21098 -9.10078 -9.02558 -8.64394 -8.31015 -5.96161 -3.98553 0.99608 1.08446 3.27247 3.35442 3.39584 3.42134 3.53726 4.07393 4.41571 4.47745 4.49670 4.60421 4.68432 4.70695 4.77646 4.80867 4.87838 5.06603 5.17295 5.18410 5.29200 5.32148 5.38838 5.39612 5.42007 5.44192 5.52164 5.53299 5.66259 5.68738 5.70327 5.74456 5.77166 5.83170 5.98680 6.10121 6.12821 6.17156 6.20199 6.21167 6.24773 6.51803 6.67804 6.71320 6.73834 6.82062 6.95843 7.14434 7.45205 7.72096 7.87602 8.04576 8.46822 9.08552 9.65031 11.15197 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.001998 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.850506 B =14013.391408 C =14833.224948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.065 3.935 13 O -0.384 6.384 14 C 0.093 3.907 15 H 0.066 0.934 16 C -0.144 4.144 17 C -0.114 4.114 18 C 0.049 3.951 19 N -0.523 5.523 20 C 0.094 3.906 21 C -0.124 4.124 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.110 4.110 27 C 0.057 3.943 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.049 0.951 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -31.590 0.190 31.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.011 4.011 13 O -0.303 6.303 14 C 0.035 3.965 15 H 0.084 0.916 16 C -0.182 4.182 17 C -0.152 4.152 18 C -0.079 4.079 19 N -0.247 5.247 20 C -0.033 4.033 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.129 4.129 27 C -0.071 4.071 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.067 0.933 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.021 -31.319 0.402 31.467 hybrid contribution -0.181 0.779 -0.469 0.927 sum 2.840 -30.540 -0.067 30.672 Atomic orbital electron populations 1.69958 1.06046 1.26655 1.50861 1.25040 0.94863 0.99250 0.95418 0.86653 0.79566 0.83157 0.78584 1.20268 1.21311 1.20262 1.21241 0.92984 0.91159 1.50543 0.92776 1.19085 0.93992 0.91180 0.97296 1.21575 0.99174 0.93484 1.00279 1.21634 0.98094 0.92946 1.02678 1.22719 0.95323 0.83438 0.99605 1.87887 1.33941 1.13443 1.94992 1.21921 0.93753 0.86016 0.94811 0.91571 1.22102 1.00576 0.97796 0.97701 1.21540 0.99208 0.94576 0.99890 1.22200 0.99392 0.97930 0.88331 1.62241 1.45230 1.04604 1.12609 1.21256 0.89739 0.94605 0.97745 1.20664 0.96841 0.97103 0.97950 1.21142 0.92230 0.99172 0.99812 1.21212 0.97536 0.97746 0.97182 1.21187 0.98757 0.96653 0.97189 1.21147 0.92763 1.00073 1.00108 1.21051 0.97345 0.97534 0.96962 1.22068 0.94765 0.89145 1.01099 0.92976 0.96569 0.96557 0.93331 0.93379 0.91785 0.91737 0.93601 0.93724 0.91427 0.91468 0.91013 0.91195 0.94083 0.90749 0.89675 0.89558 0.85973 0.85926 0.86156 0.86195 0.86317 0.93253 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.12 -2.10 5.58 -26.73 -0.15 -2.25 16 12 C 0.07 1.00 5.75 37.15 0.21 1.22 16 13 O -0.38 -5.81 9.99 -35.23 -0.35 -6.17 16 14 C 0.09 1.13 2.77 -26.65 -0.07 1.06 16 15 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 16 C -0.14 -1.56 5.62 -26.60 -0.15 -1.71 16 17 C -0.11 -0.98 6.09 -26.65 -0.16 -1.14 16 18 C 0.05 0.41 4.83 -3.84 -0.02 0.39 16 19 N -0.52 -4.74 4.86 -236.12 -1.15 -5.88 16 20 C 0.09 0.71 5.56 -4.97 -0.03 0.68 16 21 C -0.12 -1.03 4.03 -104.63 -0.42 -1.45 16 22 C -0.10 -0.93 8.03 -39.58 -0.32 -1.25 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.11 -0.86 8.12 -39.58 -0.32 -1.18 16 27 C 0.06 0.62 4.21 -3.84 -0.02 0.60 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.04 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.37 6.55 -51.93 -0.34 0.03 16 42 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 43 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 44 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.12 1.00 8.03 -52.49 -0.42 0.58 16 46 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.74 8.03 -52.48 -0.42 0.32 16 50 H 0.05 0.59 6.48 -51.93 -0.34 0.26 16 51 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 LS Contribution 401.07 15.07 6.04 6.04 Total: -1.00 -31.42 401.07 -12.53 -43.95 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -9.46 Total: -3.17 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -3.33 Total: -25.00 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: -0.41 Total: -32.61 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.35 Total: -6.17 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.42 -12.53 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.668 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds