Wall clock time and date at job start Tue Mar 31 2020 11:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48500 * 109.47269 * 270.00370 * 3 2 1 5 5 H 1.48502 * 109.47144 * 30.00496 * 3 2 1 6 6 H 1.48504 * 109.46689 * 150.00445 * 3 2 1 7 7 C 1.37873 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.46978 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47485 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47430 * 180.02562 * 12 11 10 14 14 C 1.42892 * 114.00336 * 179.97438 * 13 12 11 15 15 H 1.09006 * 109.50423 * 329.91898 * 14 13 12 16 16 C 1.53126 * 109.50672 * 89.99507 * 14 13 12 17 17 C 1.53114 * 109.16239 * 177.63553 * 16 14 13 18 18 C 1.53037 * 109.31211 * 302.32855 * 17 16 14 19 19 N 1.46929 * 109.47910 * 59.15772 * 18 17 16 20 20 C 1.46900 * 110.98461 * 174.18240 * 19 18 17 21 21 C 1.50704 * 109.47198 * 314.22871 * 20 19 18 22 22 C 1.38237 * 119.99880 * 269.72785 * 21 20 19 23 23 C 1.38231 * 119.99640 * 179.76370 * 22 21 20 24 24 C 1.38232 * 120.00086 * 0.48883 * 23 22 21 25 25 C 1.38230 * 120.00016 * 359.78914 * 24 23 22 26 26 C 1.38230 * 120.00372 * 359.95514 * 25 24 23 27 27 C 1.46850 * 111.22205 * 298.28247 * 19 18 17 28 28 H 0.97002 * 120.00027 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46527 * 60.00683 * 9 7 2 30 30 H 1.08994 * 109.47353 * 300.00853 * 9 7 2 31 31 H 1.09000 * 109.47063 * 60.00853 * 10 9 7 32 32 H 1.08994 * 109.47646 * 300.00516 * 10 9 7 33 33 H 1.09001 * 109.47084 * 59.99743 * 11 10 9 34 34 H 1.09007 * 109.46881 * 300.00229 * 11 10 9 35 35 H 1.09001 * 109.47589 * 59.99538 * 12 11 10 36 36 H 1.09007 * 109.46829 * 299.99747 * 12 11 10 37 37 H 1.09006 * 109.51941 * 57.72845 * 16 14 13 38 38 H 1.09002 * 109.52329 * 297.54713 * 16 14 13 39 39 H 1.09002 * 109.50377 * 62.28979 * 17 16 14 40 40 H 1.09003 * 109.50316 * 182.36975 * 17 16 14 41 41 H 1.08994 * 109.46612 * 179.21753 * 18 17 16 42 42 H 1.09007 * 109.46083 * 299.18512 * 18 17 16 43 43 H 1.08995 * 109.47565 * 74.22887 * 20 19 18 44 44 H 1.09003 * 109.46901 * 194.23295 * 20 19 18 45 45 H 1.07995 * 120.00021 * 359.97438 * 22 21 20 46 46 H 1.08004 * 119.99911 * 180.25065 * 23 22 21 47 47 H 1.08005 * 120.00081 * 179.76582 * 24 23 22 48 48 H 1.08000 * 120.00186 * 179.97438 * 25 24 23 49 49 H 1.08000 * 120.00384 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.46198 * 301.72747 * 27 19 18 51 51 H 1.08999 * 109.45191 * 181.75464 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 8 1.7600 -7.3876 -0.0017 14 6 2.5998 -8.5436 -0.0018 15 1 3.5334 -8.3152 -0.5161 16 6 2.8995 -8.9581 1.4415 17 6 3.7505 -10.2309 1.4325 18 6 3.0065 -11.3318 0.6731 19 7 2.7437 -10.8866 -0.7022 20 6 2.1538 -11.9685 -1.5017 21 6 2.9209 -13.2439 -1.2648 22 6 4.0012 -13.5599 -2.0674 23 6 4.7078 -14.7273 -1.8470 24 6 4.3280 -15.5837 -0.8305 25 6 3.2443 -15.2705 -0.0317 26 6 2.5408 -14.1005 -0.2486 27 6 1.8887 -9.6927 -0.7202 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8895 31 1 2.8718 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8904 33 1 0.8539 -5.0446 -0.8914 34 1 0.8532 -5.0451 0.8886 35 1 3.1005 -6.0924 0.8898 36 1 3.1017 -6.0922 -0.8902 37 1 1.9639 -9.1490 1.9673 38 1 3.4444 -8.1590 1.9443 39 1 4.7021 -10.0290 0.9409 40 1 3.9318 -10.5546 2.4575 41 1 3.6162 -12.2350 0.6533 42 1 2.0612 -11.5428 1.1733 43 1 1.1134 -12.1108 -1.2094 44 1 2.2017 -11.7068 -2.5588 45 1 4.2952 -12.8930 -2.8644 46 1 5.5543 -14.9722 -2.4714 47 1 4.8778 -16.4977 -0.6607 48 1 2.9473 -15.9397 0.7623 49 1 1.6943 -13.8556 0.3758 50 1 0.9488 -9.9115 -0.2136 51 1 1.6870 -9.4063 -1.7524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224692498.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:33 Heat of formation + Delta-G solvation = -44.896722 kcal Electronic energy + Delta-G solvation = -25518.490950 eV Core-core repulsion = 21995.457457 eV Total energy + Delta-G solvation = -3523.033494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27905 -39.06598 -37.29372 -34.72233 -33.79187 -32.30559 -31.47211 -31.28741 -30.02492 -28.31283 -26.72589 -24.75869 -23.35972 -23.23369 -22.73723 -21.68413 -21.21194 -20.18392 -19.79849 -17.21511 -16.74704 -16.23648 -16.03743 -15.80071 -15.69866 -15.54333 -14.90641 -14.56646 -14.40949 -14.23542 -14.09954 -13.78428 -13.51655 -13.24644 -12.92951 -12.88011 -12.70495 -12.41034 -12.32160 -11.74711 -11.54800 -11.46459 -11.38545 -11.30297 -11.19541 -10.92083 -10.87374 -10.68319 -10.55845 -10.48242 -10.35329 -9.64565 -9.35990 -9.28479 -9.27288 -9.17666 -9.01821 -8.58749 -8.31464 -5.96519 -3.98910 0.92684 1.03209 3.17670 3.33932 3.39906 3.43360 3.55707 4.07388 4.33273 4.46084 4.49048 4.57198 4.63350 4.68762 4.73175 4.77843 4.94090 5.02141 5.11416 5.12926 5.25533 5.29636 5.31049 5.38709 5.41095 5.42866 5.48560 5.50941 5.61598 5.66329 5.69252 5.71781 5.76457 5.82256 5.97733 6.07001 6.09342 6.14204 6.16473 6.20408 6.24076 6.51256 6.60027 6.71702 6.73917 6.81581 6.95381 7.13989 7.43479 7.72106 7.87300 8.04248 8.46556 9.08427 9.64894 11.14809 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.001627 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.821798 B =17210.123393 C =17251.225412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.066 3.934 13 O -0.385 6.385 14 C 0.094 3.906 15 H 0.067 0.933 16 C -0.144 4.144 17 C -0.114 4.114 18 C 0.049 3.951 19 N -0.529 5.529 20 C 0.094 3.906 21 C -0.081 4.081 22 C -0.099 4.099 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.114 4.114 27 C 0.060 3.940 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.043 0.957 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 -33.713 -0.892 34.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.011 4.011 13 O -0.303 6.303 14 C 0.036 3.964 15 H 0.085 0.915 16 C -0.182 4.182 17 C -0.152 4.152 18 C -0.078 4.078 19 N -0.255 5.255 20 C -0.033 4.033 21 C -0.082 4.082 22 C -0.117 4.117 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.061 0.939 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.786 -33.443 -1.099 34.355 hybrid contribution -0.063 0.757 0.430 0.873 sum 7.723 -32.686 -0.669 33.593 Atomic orbital electron populations 1.69973 1.06045 1.26528 1.50944 1.25033 0.94849 0.99236 0.95397 0.86600 0.79832 0.83519 0.78073 1.20683 1.21235 1.19914 1.21281 0.93038 0.91166 1.50451 0.92716 1.19093 0.94008 0.91198 0.97324 1.21574 0.99176 0.93475 1.00292 1.21640 0.98099 0.92942 1.02697 1.22724 0.95324 0.83377 0.99640 1.87878 1.33973 1.13470 1.94999 1.21901 0.93776 0.85902 0.94836 0.91459 1.22113 1.00591 0.97848 0.97635 1.21538 0.99263 0.94508 0.99889 1.22287 0.99229 0.98498 0.87824 1.61969 1.46481 1.04541 1.12520 1.21078 0.95328 0.87769 0.99122 1.19757 0.96739 0.95606 0.96066 1.21070 0.94675 0.96630 0.99336 1.21183 0.99874 0.94715 0.98149 1.21173 0.97261 0.99646 0.95862 1.21120 0.96092 0.97035 0.99759 1.21101 1.00056 0.94528 0.97567 1.22021 0.94096 0.89306 1.01315 0.93043 0.96527 0.96544 0.93363 0.93335 0.91716 0.91769 0.93692 0.93577 0.91419 0.91399 0.91053 0.91233 0.89916 0.94893 0.93702 0.89520 0.85754 0.86032 0.86193 0.86120 0.86346 0.93877 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 11 C -0.12 -2.09 5.58 -26.73 -0.15 -2.24 16 12 C 0.07 0.99 5.75 37.15 0.21 1.21 16 13 O -0.38 -5.72 9.99 -35.23 -0.35 -6.07 16 14 C 0.09 1.12 2.77 -26.65 -0.07 1.05 16 15 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 16 C -0.14 -1.53 5.62 -26.61 -0.15 -1.68 16 17 C -0.11 -1.01 6.09 -26.65 -0.16 -1.18 16 18 C 0.05 0.43 4.58 -3.79 -0.02 0.41 16 19 N -0.53 -4.92 4.80 -236.04 -1.13 -6.05 16 20 C 0.09 0.75 5.43 -4.97 -0.03 0.72 16 21 C -0.08 -0.63 4.13 -104.62 -0.43 -1.06 16 22 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 23 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 24 C -0.12 -0.78 10.05 -39.59 -0.40 -1.17 16 25 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 26 C -0.11 -0.82 7.79 -39.58 -0.31 -1.13 16 27 C 0.06 0.64 5.08 -3.83 -0.02 0.62 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.65 7.94 -51.93 -0.41 0.23 16 36 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.72 5.65 -51.93 -0.29 0.42 16 42 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 43 H 0.04 0.35 8.02 -51.93 -0.42 -0.07 16 44 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 47 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -31.19 403.82 -12.58 -43.77 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -9.51 Total: -4.16 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -3.39 Total: -23.83 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.40 Total: -32.70 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.35 Total: -6.07 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.19 -12.58 -43.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692498.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.131 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds