Wall clock time and date at job start Tue Mar 31 2020 11:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48500 * 109.47269 * 270.00370 * 3 2 1 5 5 H 1.48502 * 109.47144 * 30.00496 * 3 2 1 6 6 H 1.48504 * 109.46689 * 150.00445 * 3 2 1 7 7 C 1.37873 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.46978 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47485 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47430 * 180.02562 * 12 11 10 14 14 C 1.42892 * 114.00336 * 179.97438 * 13 12 11 15 15 H 1.09006 * 109.50423 * 329.91898 * 14 13 12 16 16 C 1.53126 * 109.50672 * 89.99507 * 14 13 12 17 17 C 1.53114 * 109.16239 * 177.63553 * 16 14 13 18 18 C 1.53037 * 109.31211 * 302.32855 * 17 16 14 19 19 N 1.46929 * 109.47910 * 59.15772 * 18 17 16 20 20 C 1.46900 * 110.98461 * 174.18240 * 19 18 17 21 21 C 1.50704 * 109.47198 * 314.22871 * 20 19 18 22 22 C 1.38237 * 119.99880 * 269.72785 * 21 20 19 23 23 C 1.38231 * 119.99640 * 179.76370 * 22 21 20 24 24 C 1.38232 * 120.00086 * 0.48883 * 23 22 21 25 25 C 1.38230 * 120.00016 * 359.78914 * 24 23 22 26 26 C 1.38230 * 120.00372 * 359.95514 * 25 24 23 27 27 C 1.46850 * 111.22205 * 298.28247 * 19 18 17 28 28 H 0.97002 * 120.00027 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46527 * 60.00683 * 9 7 2 30 30 H 1.08994 * 109.47353 * 300.00853 * 9 7 2 31 31 H 1.09000 * 109.47063 * 60.00853 * 10 9 7 32 32 H 1.08994 * 109.47646 * 300.00516 * 10 9 7 33 33 H 1.09001 * 109.47084 * 59.99743 * 11 10 9 34 34 H 1.09007 * 109.46881 * 300.00229 * 11 10 9 35 35 H 1.09001 * 109.47589 * 59.99538 * 12 11 10 36 36 H 1.09007 * 109.46829 * 299.99747 * 12 11 10 37 37 H 1.09006 * 109.51941 * 57.72845 * 16 14 13 38 38 H 1.09002 * 109.52329 * 297.54713 * 16 14 13 39 39 H 1.09002 * 109.50377 * 62.28979 * 17 16 14 40 40 H 1.09003 * 109.50316 * 182.36975 * 17 16 14 41 41 H 1.08994 * 109.46612 * 179.21753 * 18 17 16 42 42 H 1.09007 * 109.46083 * 299.18512 * 18 17 16 43 43 H 1.08995 * 109.47565 * 74.22887 * 20 19 18 44 44 H 1.09003 * 109.46901 * 194.23295 * 20 19 18 45 45 H 1.07995 * 120.00021 * 359.97438 * 22 21 20 46 46 H 1.08004 * 119.99911 * 180.25065 * 23 22 21 47 47 H 1.08005 * 120.00081 * 179.76582 * 24 23 22 48 48 H 1.08000 * 120.00186 * 179.97438 * 25 24 23 49 49 H 1.08000 * 120.00384 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.46198 * 301.72747 * 27 19 18 51 51 H 1.08999 * 109.45191 * 181.75464 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 8 1.7600 -7.3876 -0.0017 14 6 2.5998 -8.5436 -0.0018 15 1 3.5334 -8.3152 -0.5161 16 6 2.8995 -8.9581 1.4415 17 6 3.7505 -10.2309 1.4325 18 6 3.0065 -11.3318 0.6731 19 7 2.7437 -10.8866 -0.7022 20 6 2.1538 -11.9685 -1.5017 21 6 2.9209 -13.2439 -1.2648 22 6 4.0012 -13.5599 -2.0674 23 6 4.7078 -14.7273 -1.8470 24 6 4.3280 -15.5837 -0.8305 25 6 3.2443 -15.2705 -0.0317 26 6 2.5408 -14.1005 -0.2486 27 6 1.8887 -9.6927 -0.7202 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8895 31 1 2.8718 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8904 33 1 0.8539 -5.0446 -0.8914 34 1 0.8532 -5.0451 0.8886 35 1 3.1005 -6.0924 0.8898 36 1 3.1017 -6.0922 -0.8902 37 1 1.9639 -9.1490 1.9673 38 1 3.4444 -8.1590 1.9443 39 1 4.7021 -10.0290 0.9409 40 1 3.9318 -10.5546 2.4575 41 1 3.6162 -12.2350 0.6533 42 1 2.0612 -11.5428 1.1733 43 1 1.1134 -12.1108 -1.2094 44 1 2.2017 -11.7068 -2.5588 45 1 4.2952 -12.8930 -2.8644 46 1 5.5543 -14.9722 -2.4714 47 1 4.8778 -16.4977 -0.6607 48 1 2.9473 -15.9397 0.7623 49 1 1.6943 -13.8556 0.3758 50 1 0.9488 -9.9115 -0.2136 51 1 1.6870 -9.4063 -1.7524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224692498.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:32 Heat of formation + Delta-G solvation = -60.760716 kcal Electronic energy + Delta-G solvation = -25519.178865 eV Core-core repulsion = 21995.457457 eV Total energy + Delta-G solvation = -3523.721408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94751 -39.83593 -38.26518 -36.41084 -34.76541 -34.14562 -32.14105 -31.78861 -31.15020 -29.86511 -27.38503 -26.57601 -24.15821 -23.98185 -23.37674 -23.24538 -21.94408 -21.67398 -20.74685 -18.43886 -17.91596 -17.48410 -17.01452 -16.84191 -16.48444 -16.39959 -16.25392 -15.61781 -15.49366 -15.24319 -14.96527 -14.61743 -14.36655 -14.29513 -14.19622 -13.73156 -13.67826 -13.51015 -13.44028 -13.05606 -12.95756 -12.88786 -12.59820 -12.35367 -12.27357 -12.02824 -11.93747 -11.85908 -11.77748 -11.68462 -11.47965 -11.41543 -11.31774 -11.06304 -10.55389 -10.41477 -9.77932 -9.73524 -9.28684 -8.19640 -6.31392 0.41126 0.52975 1.40338 1.42177 1.53307 2.35153 2.42816 2.88978 3.13255 3.26626 3.70257 3.76748 3.84399 3.97299 3.99851 4.06363 4.14292 4.18211 4.22940 4.29697 4.35692 4.38022 4.45269 4.50213 4.55754 4.61126 4.63012 4.65808 4.70274 4.75015 4.81469 4.83629 4.91737 4.94750 5.02077 5.11967 5.13964 5.18377 5.19056 5.25018 5.29108 5.33543 5.53398 5.57987 5.65663 5.71029 5.75549 5.85889 5.95352 6.02146 6.13840 6.24643 6.34080 6.85971 7.38049 8.92330 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.001627 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.821798 B =17210.123393 C =17251.225412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.109 4.109 12 C 0.075 3.925 13 O -0.402 6.402 14 C 0.091 3.909 15 H 0.069 0.931 16 C -0.141 4.141 17 C -0.109 4.109 18 C 0.053 3.947 19 N -0.532 5.532 20 C 0.095 3.905 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.122 4.122 27 C 0.065 3.935 28 H 0.263 0.737 29 H -0.010 1.010 30 H -0.010 1.010 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.123 0.877 50 H 0.036 0.964 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 -34.734 -0.703 36.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.001 4.001 13 O -0.321 6.321 14 C 0.033 3.967 15 H 0.087 0.913 16 C -0.179 4.179 17 C -0.147 4.147 18 C -0.075 4.075 19 N -0.258 5.258 20 C -0.031 4.031 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.063 4.063 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.145 0.855 46 H 0.155 0.845 47 H 0.157 0.843 48 H 0.155 0.845 49 H 0.141 0.859 50 H 0.055 0.945 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.698 -34.489 -0.912 35.838 hybrid contribution -0.691 0.998 0.363 1.267 sum 9.007 -33.491 -0.549 34.685 Atomic orbital electron populations 1.70114 1.07894 1.27769 1.51693 1.26033 0.95798 1.03526 0.94692 0.85408 0.78642 0.78220 0.78529 1.19706 1.20742 1.18621 1.21742 0.93673 0.92388 1.50555 0.91943 1.19029 0.94536 0.93243 0.94775 1.21353 0.98031 0.92793 1.01014 1.21458 0.98298 0.92955 1.01947 1.22504 0.94242 0.82655 1.00721 1.87839 1.35013 1.14027 1.95209 1.22069 0.93535 0.85183 0.95915 0.91306 1.22078 1.00578 0.98667 0.96560 1.21523 0.98705 0.93608 1.00840 1.22267 0.99232 0.98495 0.87474 1.61980 1.46215 1.04583 1.13025 1.21085 0.95386 0.87635 0.99040 1.19772 0.97115 0.95625 0.96685 1.21221 0.94916 0.97234 0.99609 1.21437 1.00253 0.94459 0.98487 1.21474 0.97246 1.00251 0.95473 1.21387 0.95997 0.97028 1.00188 1.21230 1.00411 0.94849 0.97599 1.21926 0.93876 0.89518 1.00931 0.92791 0.99123 0.99151 0.92559 0.92503 0.92491 0.92607 0.92592 0.92466 0.92074 0.91598 0.91176 0.89752 0.89559 0.94920 0.93644 0.89242 0.85475 0.84492 0.84298 0.84464 0.85906 0.94545 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.09 -3.95 5.15 30.59 0.16 -3.79 16 11 C -0.11 -3.92 5.58 30.59 0.17 -3.75 16 12 C 0.08 2.19 5.75 71.98 0.41 2.61 16 13 O -0.40 -11.70 9.99 -148.98 -1.49 -13.18 16 14 C 0.09 2.09 2.77 30.65 0.08 2.17 16 15 H 0.07 1.56 7.79 -2.38 -0.02 1.54 16 16 C -0.14 -2.85 5.62 30.67 0.17 -2.68 16 17 C -0.11 -1.77 6.09 30.64 0.19 -1.58 16 18 C 0.05 0.86 4.58 86.31 0.40 1.25 16 19 N -0.53 -9.42 4.80 -900.70 -4.32 -13.75 16 20 C 0.10 1.45 5.43 85.56 0.46 1.92 16 21 C -0.09 -1.34 4.13 -19.86 -0.08 -1.42 16 22 C -0.11 -1.56 9.70 22.27 0.22 -1.34 16 23 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 24 C -0.13 -1.39 10.05 22.27 0.22 -1.16 16 25 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 26 C -0.12 -1.62 7.79 22.27 0.17 -1.45 16 27 C 0.07 1.35 5.08 86.33 0.44 1.79 16 28 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.06 1.52 7.94 -2.39 -0.02 1.50 16 36 H 0.06 1.55 8.09 -2.38 -0.02 1.53 16 37 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.07 1.35 7.94 -2.39 -0.02 1.33 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.37 5.65 -2.39 -0.01 1.36 16 42 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.05 0.68 8.02 -2.39 -0.02 0.66 16 44 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 45 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 46 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 47 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 48 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 49 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 Total: -1.00 -66.68 403.82 1.66 -65.03 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.85 Total: 12.84 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.31 Total: -39.96 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -4.04 Total: -71.58 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.49 Total: -13.18 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.68 1.66 -65.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692498.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.266 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds