Wall clock time and date at job start Tue Mar 31 2020 11:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92433 * 2 1 4 4 C 1.38100 * 120.07412 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.92568 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07168 * 179.97438 * 5 4 3 7 7 C 1.46847 * 111.00097 * 304.20502 * 6 5 4 8 8 C 1.53043 * 109.52313 * 174.16581 * 7 6 5 9 9 C 1.53112 * 109.28022 * 59.17682 * 8 7 6 10 10 O 1.42896 * 109.52302 * 182.44272 * 9 8 7 11 11 C 1.42908 * 113.99769 * 269.68438 * 10 9 8 12 12 C 1.53005 * 109.46804 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46806 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46806 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46666 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00519 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99709 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00218 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47036 * 89.99755 * 19 17 15 21 21 H 1.48491 * 109.47565 * 210.00169 * 19 17 15 22 22 H 1.48504 * 109.46989 * 330.00407 * 19 17 15 23 23 C 1.53118 * 109.16204 * 302.34774 * 9 8 7 24 24 C 1.46848 * 110.99923 * 179.97438 * 6 5 4 25 25 C 1.38908 * 119.85249 * 0.25063 * 5 4 3 26 26 C 1.38109 * 119.92333 * 359.49493 * 25 5 4 27 27 H 1.09001 * 109.47254 * 90.00339 * 1 2 3 28 28 H 1.09002 * 109.47310 * 210.00234 * 1 2 3 29 29 H 1.09000 * 109.47388 * 330.00170 * 1 2 3 30 30 H 1.08003 * 119.96259 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.03876 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.46628 * 294.17806 * 7 6 5 33 33 H 1.09003 * 109.46158 * 54.14653 * 7 6 5 34 34 H 1.09004 * 109.49779 * 299.24018 * 8 7 6 35 35 H 1.08999 * 109.53512 * 179.14270 * 8 7 6 36 36 H 1.09001 * 109.57078 * 62.28400 * 9 8 7 37 37 H 1.08989 * 109.47431 * 299.99727 * 11 10 9 38 38 H 1.08998 * 109.47034 * 60.00056 * 11 10 9 39 39 H 1.08999 * 109.47480 * 299.99782 * 12 11 10 40 40 H 1.08998 * 109.47103 * 60.00314 * 12 11 10 41 41 H 1.08990 * 109.47223 * 300.00445 * 13 12 11 42 42 H 1.09006 * 109.46814 * 60.00637 * 13 12 11 43 43 H 1.09003 * 109.46973 * 300.00449 * 14 13 12 44 44 H 1.08998 * 109.47103 * 60.00447 * 14 13 12 45 45 H 0.97000 * 119.99969 * 179.97438 * 18 17 15 46 46 H 1.08992 * 109.50367 * 297.71286 * 23 9 8 47 47 H 1.09002 * 109.53418 * 177.61454 * 23 9 8 48 48 H 1.09005 * 109.46506 * 305.85496 * 24 6 5 49 49 H 1.09003 * 109.46298 * 65.83254 * 24 6 5 50 50 H 1.08003 * 120.03892 * 179.72783 * 25 5 4 51 51 H 1.07992 * 119.96279 * 180.25242 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6707 0.0001 0.0016 7 6 6.1969 0.7698 -1.1329 8 6 7.7199 0.8706 -1.0201 9 6 8.3205 -0.5377 -1.0123 10 8 9.7376 -0.4516 -0.8500 11 6 10.4596 -0.3691 -2.0805 12 6 11.9587 -0.2809 -1.7872 13 6 12.7318 -0.1932 -3.1047 14 6 14.2308 -0.1043 -2.8114 15 6 14.9921 -0.0173 -4.1090 16 1 14.4600 -0.0242 -5.0489 17 6 16.3680 0.0711 -4.0964 18 7 17.0160 0.0790 -2.9520 19 14 17.3119 0.1783 -5.7048 20 1 17.4718 1.6033 -6.0909 21 1 18.6504 -0.4419 -5.5357 22 1 16.5635 -0.5412 -6.7668 23 6 7.7199 -1.3338 0.1496 24 6 6.1970 -1.3708 0.0035 25 6 3.5779 -1.2020 -0.0031 26 6 2.1968 -1.1985 0.0017 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6550 2.1328 -0.0004 31 1 4.1160 2.1385 0.0010 32 1 5.9342 0.2691 -2.0647 33 1 5.7650 1.7706 -1.1243 34 1 7.9830 1.3836 -0.0950 35 1 8.1121 1.4289 -1.8701 36 1 8.0914 -1.0377 -1.9534 37 1 10.2580 -1.2565 -2.6803 38 1 10.1440 0.5190 -2.6280 39 1 12.1601 0.6068 -1.1876 40 1 12.2746 -1.1687 -1.2395 41 1 12.5303 -1.0810 -3.7040 42 1 12.4159 0.6946 -3.6528 43 1 14.4318 0.7838 -2.2123 44 1 14.5470 -0.9917 -2.2631 45 1 17.9840 0.1409 -2.9431 46 1 7.9831 -0.8555 1.0930 47 1 8.1116 -2.3509 0.1355 48 1 5.7652 -1.9245 0.8372 49 1 5.9344 -1.8619 -0.9336 50 1 4.1161 -2.1384 -0.0067 51 1 1.6551 -2.1327 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224693187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:40 Heat of formation + Delta-G solvation = -45.143833 kcal Electronic energy + Delta-G solvation = -25350.348213 eV Core-core repulsion = 21827.304004 eV Total energy + Delta-G solvation = -3523.044209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77915 -38.92407 -37.36796 -34.79898 -33.54770 -32.25022 -31.99101 -30.91762 -30.69263 -28.61110 -26.48050 -24.88938 -24.31469 -23.70783 -22.13093 -21.67249 -21.21761 -20.23292 -19.82579 -17.91725 -16.56595 -16.22704 -16.05856 -15.73312 -15.63092 -15.23458 -14.82348 -14.46292 -14.38327 -14.21877 -14.06880 -13.97607 -13.84548 -13.20795 -13.02371 -12.63033 -12.61847 -12.39342 -12.23719 -11.96766 -11.71825 -11.68536 -11.57727 -11.51246 -11.25016 -11.09401 -10.93798 -10.71509 -10.59527 -10.49365 -10.37838 -9.88482 -9.66451 -9.37895 -9.29944 -9.27310 -9.03135 -8.32571 -8.05669 -5.97569 -4.00081 1.01850 1.07364 3.21899 3.32943 3.39016 3.42239 3.51270 3.65990 4.38389 4.43667 4.47743 4.56480 4.56667 4.66088 4.76679 4.81927 4.92188 4.98780 5.06001 5.09812 5.15803 5.22423 5.29660 5.30605 5.32854 5.36538 5.38459 5.43477 5.47632 5.55195 5.58567 5.72790 5.77398 5.77969 5.94376 5.96548 6.01041 6.03162 6.12916 6.19424 6.29835 6.45508 6.49214 6.67172 6.79427 6.93234 6.97616 7.11547 7.38958 7.70762 7.85896 8.03052 8.45244 9.07221 9.63775 11.13751 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.042637 B = 0.001580 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.544321 B =17713.120753 C =17917.024119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.137 4.137 5 C 0.111 3.889 6 N -0.489 5.489 7 C 0.063 3.937 8 C -0.142 4.142 9 C 0.088 3.912 10 O -0.380 6.380 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.116 4.116 24 C 0.055 3.945 25 C -0.169 4.169 26 C -0.094 4.094 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.046 0.954 50 H 0.127 0.873 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.962 -1.126 6.990 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.158 4.158 5 C 0.013 3.987 6 N -0.204 5.204 7 C -0.062 4.062 8 C -0.180 4.180 9 C 0.030 3.970 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.154 4.154 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.072 4.072 25 C -0.190 4.190 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.145 0.855 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -33.427 -0.889 7.653 34.304 hybrid contribution 0.328 -0.245 -1.692 1.740 sum -33.100 -1.134 5.961 33.651 Atomic orbital electron populations 1.20736 0.91344 1.02567 1.02079 1.19844 0.96020 0.93160 1.02826 1.20898 0.93636 0.97550 0.99320 1.20796 0.93995 0.96847 1.04139 1.18966 0.88078 0.93751 0.97927 1.59014 1.04474 1.15062 1.41867 1.22197 0.95425 0.98408 0.90190 1.22153 0.93440 0.98428 1.03960 1.22054 0.82132 0.94809 0.97998 1.87952 1.16414 1.94572 1.30966 1.22736 0.93490 0.99451 0.85634 1.21640 0.90919 1.02720 1.00107 1.21579 0.98577 1.00215 0.94156 1.19093 0.88325 0.97310 0.96888 1.21275 0.91556 1.50220 0.92929 0.92741 1.25032 0.97895 0.95399 0.96160 1.69971 1.07911 1.50746 1.24827 0.86603 0.79301 0.78159 0.83978 1.20683 1.21215 1.19923 1.21675 0.92870 1.01089 0.99724 1.22256 0.95223 0.88103 1.01577 1.21321 0.94698 0.97340 1.05640 1.20884 0.93681 0.97509 0.99188 0.91494 0.91772 0.91733 0.85992 0.85721 0.93806 0.89714 0.89861 0.90676 0.92599 0.93723 0.93730 0.91676 0.91705 0.93382 0.93380 0.96525 0.96517 0.93024 0.89905 0.90270 0.89425 0.93531 0.85536 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.00 0.36 -0.21 16 2 C -0.12 -0.87 5.88 -104.59 -0.62 -1.49 16 3 C -0.10 -0.73 9.69 -39.61 -0.38 -1.11 16 4 C -0.14 -1.18 9.16 -39.38 -0.36 -1.54 16 5 C 0.11 1.01 5.64 -83.79 -0.47 0.54 16 6 N -0.49 -4.53 4.70 -171.15 -0.80 -5.34 16 7 C 0.06 0.55 5.26 -3.83 -0.02 0.53 16 8 C -0.14 -1.42 5.72 -26.65 -0.15 -1.57 16 9 C 0.09 0.98 2.68 -26.61 -0.07 0.91 16 10 O -0.38 -5.51 9.99 -35.23 -0.35 -5.86 16 11 C 0.06 0.93 5.75 37.16 0.21 1.15 16 12 C -0.12 -2.07 5.58 -26.73 -0.15 -2.22 16 13 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.12 -1.12 5.75 -26.65 -0.15 -1.28 16 24 C 0.06 0.46 4.15 -3.84 -0.02 0.45 16 25 C -0.17 -1.41 8.82 -39.38 -0.35 -1.76 16 26 C -0.09 -0.72 9.69 -39.61 -0.38 -1.10 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.12 0.95 7.16 -52.49 -0.38 0.58 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.67 6.71 -51.93 -0.35 0.32 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.74 7.96 -51.93 -0.41 0.32 16 36 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 37 H 0.04 0.62 8.09 -51.94 -0.42 0.20 16 38 H 0.04 0.62 7.96 -51.93 -0.41 0.20 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 0.66 7.00 -51.93 -0.36 0.29 16 49 H 0.05 0.36 7.72 -51.93 -0.40 -0.04 16 50 H 0.13 0.90 5.81 -52.48 -0.30 0.59 16 51 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -31.50 401.38 -11.95 -43.45 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -9.32 Total: -4.10 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -3.24 Total: -24.46 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: -0.07 Total: -31.91 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.35 Total: -5.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.50 -11.95 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224693187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.689 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds