Wall clock time and date at job start Tue Mar 31 2020 11:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44794 * 112.18160 * 2 1 4 4 C 1.54506 * 108.18857 * 65.34399 * 3 2 1 5 5 C 1.53342 * 111.17076 * 307.89778 * 3 2 1 6 6 C 1.52654 * 113.00419 * 184.27412 * 3 2 1 7 7 C 1.52832 * 110.40018 * 49.18843 * 6 3 2 8 8 O 1.43242 * 109.22539 * 180.96136 * 7 6 3 9 9 C 1.35669 * 117.00487 * 201.82534 * 8 7 6 10 10 C 1.39308 * 119.82060 * 174.97566 * 9 8 7 11 11 C 1.36441 * 120.18907 * 179.76055 * 10 9 8 12 12 C 1.40837 * 119.80558 * 0.51808 * 11 10 9 13 13 C 1.41215 * 120.17568 * 179.71901 * 12 11 10 14 14 H 1.08000 * 119.99752 * 160.77493 * 13 12 11 15 15 C 1.39890 * 120.00286 * 340.77142 * 13 12 11 16 16 N 1.30878 * 119.99983 * 327.08233 * 15 13 12 17 17 Si 1.86801 * 120.00146 * 147.07536 * 15 13 12 18 18 H 1.48496 * 109.46932 * 94.99084 * 17 15 13 19 19 H 1.48497 * 109.47048 * 214.99456 * 17 15 13 20 20 H 1.48503 * 109.46900 * 334.99198 * 17 15 13 21 21 C 1.40823 * 119.64323 * 359.73844 * 12 11 10 22 22 C 1.36436 * 119.81410 * 0.02562 * 21 12 11 23 23 C 1.52840 * 108.54500 * 299.95204 * 7 6 3 24 24 C 1.44794 * 112.17689 * 221.04376 * 2 1 3 25 25 C 1.53336 * 111.18252 * 52.23182 * 24 2 1 26 26 C 1.54502 * 108.20197 * 294.74979 * 24 2 1 27 27 H 1.09002 * 109.47041 * 59.99502 * 1 2 3 28 28 H 1.08999 * 109.47651 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46991 * 299.99855 * 1 2 3 30 30 H 1.08999 * 109.47623 * 300.02559 * 4 3 2 31 31 H 1.09001 * 109.47270 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.46804 * 60.02950 * 4 3 2 33 33 H 1.08994 * 109.47339 * 178.05571 * 5 3 2 34 34 H 1.09003 * 109.46520 * 298.05174 * 5 3 2 35 35 H 1.08999 * 109.47185 * 58.05098 * 5 3 2 36 36 H 1.09248 * 109.43144 * 169.61306 * 6 3 2 37 37 H 1.09241 * 109.44266 * 288.74741 * 6 3 2 38 38 H 1.08697 * 110.44952 * 61.18588 * 7 6 3 39 39 H 1.08001 * 119.90977 * 0.02695 * 10 9 8 40 40 H 1.07998 * 120.10097 * 180.25878 * 11 10 9 41 41 H 0.97003 * 119.99762 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.09493 * 180.02562 * 21 12 11 43 43 H 1.08000 * 119.90839 * 179.97438 * 22 21 12 44 44 H 1.09237 * 109.38168 * 180.60979 * 23 7 6 45 45 H 1.09235 * 109.37935 * 299.70481 * 23 7 6 46 46 H 1.09008 * 109.46690 * 185.53127 * 25 24 2 47 47 H 1.08993 * 109.46997 * 305.53430 * 25 24 2 48 48 H 1.09000 * 109.46993 * 65.53399 * 25 24 2 49 49 H 1.09004 * 109.46623 * 297.70327 * 26 24 2 50 50 H 1.09001 * 109.47082 * 57.70466 * 26 24 2 51 51 H 1.09001 * 109.46960 * 177.70470 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0157 1.3408 0.0000 4 6 1.6307 2.0186 1.3340 5 6 1.4114 2.1852 -1.1284 6 6 3.5385 1.3642 -0.1047 7 6 4.0075 0.4671 -1.2497 8 8 5.4385 0.4900 -1.3110 9 6 6.0101 0.1459 -2.4923 10 6 7.3904 0.2487 -2.6499 11 6 7.9736 -0.0999 -3.8331 12 6 7.1748 -0.5543 -4.9003 13 6 7.7696 -0.9115 -6.1303 14 1 7.2331 -1.5374 -6.8279 15 6 9.0538 -0.4545 -6.4451 16 7 9.4531 0.7179 -6.0221 17 14 10.1986 -1.5176 -7.4690 18 1 10.0933 -1.1251 -8.8973 19 1 11.5966 -1.3284 -7.0054 20 1 9.8160 -2.9446 -7.3183 21 6 5.7797 -0.6500 -4.7344 22 6 5.2127 -0.3021 -3.5432 23 6 3.5387 -0.9608 -0.9719 24 6 2.0156 -1.0113 -0.8804 25 6 1.4138 -0.9054 -2.2868 26 6 1.6287 -2.3985 -0.3209 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.5450 2.0562 1.4225 31 1 2.0323 3.0316 1.3560 32 1 2.0434 1.4460 2.1648 33 1 1.8153 3.1965 -1.0816 34 1 1.6616 1.7382 -2.0905 35 1 0.3279 2.2210 -1.0151 36 1 3.8747 2.3878 -0.2854 37 1 3.9729 1.0114 0.8334 38 1 3.6085 0.8205 -2.1970 39 1 8.0011 0.6011 -1.8319 40 1 9.0443 -0.0237 -3.9524 41 1 10.3437 1.0346 -6.2401 42 1 5.1602 -0.9979 -5.5478 43 1 4.1429 -0.3745 -3.4144 44 1 3.8764 -1.6165 -1.7777 45 1 3.9711 -1.3077 -0.0307 46 1 1.7684 -1.7360 -2.8972 47 1 0.3265 -0.9415 -2.2204 48 1 1.7189 0.0366 -2.7426 49 1 2.0738 -2.5293 0.6655 50 1 0.5439 -2.4689 -0.2423 51 1 1.9957 -3.1758 -0.9912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:00 Heat of formation + Delta-G solvation = -19.341963 kcal Electronic energy + Delta-G solvation = -28099.524705 eV Core-core repulsion = 24577.599349 eV Total energy + Delta-G solvation = -3521.925356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59554 -38.50304 -36.38086 -35.22992 -33.52428 -32.55333 -29.75401 -29.27833 -28.80580 -27.79814 -26.72946 -26.28015 -26.03668 -24.72373 -22.18864 -20.87957 -20.57086 -20.16155 -17.76569 -17.32478 -16.88031 -16.06750 -15.85139 -15.17745 -14.70181 -14.59149 -14.28264 -14.13486 -13.94137 -13.50568 -13.30730 -12.97626 -12.87322 -12.86299 -12.61003 -12.33303 -12.29670 -12.05173 -12.01600 -11.74679 -11.70555 -11.48709 -11.46094 -11.34526 -11.16573 -11.12200 -10.96078 -10.79170 -10.65485 -10.55392 -10.38841 -10.15663 -9.91380 -9.61217 -9.28314 -8.86880 -7.98420 -7.61204 -7.12954 -6.82071 -4.18924 2.78781 2.97753 3.07408 3.10461 3.26100 3.64946 3.92627 4.03528 4.52152 4.67218 4.75739 4.85468 4.92559 5.05238 5.24939 5.28279 5.36599 5.38540 5.45503 5.52211 5.57683 5.61918 5.63003 5.67823 5.69100 5.75263 5.78716 5.85671 5.89074 5.95517 6.02857 6.08623 6.09565 6.13896 6.14805 6.19835 6.26692 6.32249 6.36572 6.48883 6.77972 6.99785 7.12141 7.17018 7.23607 7.48301 7.53938 7.57190 7.85043 8.01727 8.20074 8.47947 8.68222 8.88246 9.02660 10.08628 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.003032 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.616664 B = 9233.500932 C = 9691.095927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.572 5.572 3 C 0.148 3.852 4 C -0.140 4.140 5 C -0.185 4.185 6 C -0.104 4.104 7 C 0.096 3.904 8 O -0.324 6.324 9 C -0.016 4.016 10 C -0.112 4.112 11 C -0.152 4.152 12 C 0.094 3.906 13 C -0.472 4.472 14 H 0.079 0.921 15 C 0.088 3.912 16 N -0.774 5.774 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.207 4.207 22 C -0.159 4.159 23 C -0.133 4.133 24 C 0.146 3.854 25 C -0.183 4.183 26 C -0.142 4.142 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.282 0.718 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -0.059 10.643 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.297 5.297 3 C 0.059 3.941 4 C -0.198 4.198 5 C -0.244 4.244 6 C -0.142 4.142 7 C 0.039 3.961 8 O -0.240 6.240 9 C -0.059 4.059 10 C -0.131 4.131 11 C -0.172 4.172 12 C 0.091 3.909 13 C -0.500 4.500 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.398 5.398 17 Si 0.717 3.283 18 H -0.196 1.196 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.226 4.226 22 C -0.178 4.178 23 C -0.171 4.171 24 C 0.057 3.943 25 C -0.242 4.242 26 C -0.200 4.200 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.147 0.049 11.159 18.018 hybrid contribution 0.211 -0.149 -1.483 1.505 sum -13.936 -0.099 9.676 16.966 Atomic orbital electron populations 1.22228 0.86357 1.01781 1.00292 1.56491 1.06242 1.08626 1.58305 1.20337 0.93179 0.85848 0.94749 1.22291 1.01115 0.99751 0.96672 1.22727 1.01134 1.00768 0.99729 1.21615 0.93205 1.00287 0.99118 1.21917 0.81319 0.94700 0.98165 1.85932 1.19144 1.85853 1.33064 1.18489 0.92353 1.09660 0.85437 1.19765 0.91158 1.04288 0.97915 1.20719 0.99243 1.05451 0.91748 1.17509 0.90600 0.89837 0.92927 1.19398 0.99578 1.28436 1.02602 0.90324 1.25892 0.98692 0.93651 0.95035 1.69962 1.19065 1.14543 1.36192 0.86551 0.79457 0.82277 0.80005 1.19589 1.19930 1.18202 1.20465 0.94706 1.10953 0.96502 1.20441 0.97170 1.05410 0.94757 1.22186 0.93245 0.98201 1.03503 1.20377 0.93714 0.90760 0.89428 1.22737 1.00872 1.02553 0.98044 1.22334 1.00988 0.95260 1.01381 0.95361 0.91432 0.91775 0.92712 0.92391 0.91990 0.91990 0.92372 0.92363 0.90748 0.90590 0.91740 0.88689 0.86886 0.90720 0.88988 0.88722 0.90299 0.90779 0.91845 0.92579 0.92492 0.92096 0.92726 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 7.53 60.07 0.45 0.82 16 2 N -0.57 -6.34 3.54 -212.78 -0.75 -7.10 16 3 C 0.15 1.67 0.69 -131.94 -0.09 1.58 16 4 C -0.14 -1.33 8.11 37.95 0.31 -1.03 16 5 C -0.18 -2.02 7.58 37.33 0.28 -1.73 16 6 C -0.10 -1.43 4.31 -26.99 -0.12 -1.55 16 7 C 0.10 1.58 1.96 -26.90 -0.05 1.53 16 8 O -0.32 -6.71 9.79 -18.71 -0.18 -6.89 16 9 C -0.02 -0.38 6.60 -38.78 -0.26 -0.64 16 10 C -0.11 -2.75 9.92 -39.83 -0.40 -3.15 16 11 C -0.15 -4.00 8.76 -39.25 -0.34 -4.34 16 12 C 0.09 2.51 5.60 -106.81 -0.60 1.91 16 13 C -0.47 -12.57 8.95 -37.83 -0.34 -12.91 16 14 H 0.08 2.02 8.02 -52.49 -0.42 1.60 16 15 C 0.09 2.21 4.79 -17.34 -0.08 2.12 16 16 N -0.77 -19.93 11.63 55.54 0.65 -19.29 16 17 Si 0.89 18.44 29.66 -169.99 -5.04 13.39 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 C -0.21 -5.12 9.74 -39.25 -0.38 -5.51 16 22 C -0.16 -3.62 8.08 -39.83 -0.32 -3.94 16 23 C -0.13 -1.99 3.89 -26.98 -0.10 -2.09 16 24 C 0.15 1.76 0.68 -131.94 -0.09 1.67 16 25 C -0.18 -2.18 7.74 37.33 0.29 -1.89 16 26 C -0.14 -1.51 8.21 37.95 0.31 -1.20 16 27 H 0.03 0.26 5.70 -51.93 -0.30 -0.04 16 28 H 0.07 0.57 5.80 -51.93 -0.30 0.27 16 29 H 0.06 0.53 6.41 -51.93 -0.33 0.19 16 30 H 0.05 0.46 6.48 -51.93 -0.34 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.06 0.72 5.11 -51.93 -0.27 0.45 16 35 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 36 H 0.07 1.01 8.04 -51.79 -0.42 0.60 16 37 H 0.08 1.06 8.07 -51.79 -0.42 0.64 16 38 H 0.06 1.13 4.56 -52.10 -0.24 0.89 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.11 3.01 6.35 -52.49 -0.33 2.68 16 41 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 43 H 0.09 1.91 5.36 -52.49 -0.28 1.62 16 44 H 0.08 1.30 6.65 -51.80 -0.34 0.95 16 45 H 0.07 1.13 8.05 -51.80 -0.42 0.72 16 46 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.06 0.58 6.66 -51.93 -0.35 0.24 16 48 H 0.06 0.74 5.05 -51.93 -0.26 0.48 16 49 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 50 H 0.05 0.51 6.09 -51.93 -0.32 0.19 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -27.51 371.11 -9.44 -36.95 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.17 Total: 7.66 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -1.53 Total: -30.32 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: -0.11 Total: -26.38 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.18 Total: -6.89 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.04 Total: 13.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.51 -9.44 -36.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.608 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds