Wall clock time and date at job start Tue Mar 31 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44794 * 112.18160 * 2 1 4 4 C 1.54506 * 108.18857 * 65.34399 * 3 2 1 5 5 C 1.53342 * 111.17076 * 307.89778 * 3 2 1 6 6 C 1.52654 * 113.00419 * 184.27412 * 3 2 1 7 7 C 1.52832 * 110.40018 * 49.18843 * 6 3 2 8 8 O 1.43242 * 109.22539 * 180.96136 * 7 6 3 9 9 C 1.35669 * 117.00487 * 201.82534 * 8 7 6 10 10 C 1.39308 * 119.82060 * 174.97566 * 9 8 7 11 11 C 1.36441 * 120.18907 * 179.76055 * 10 9 8 12 12 C 1.40837 * 119.80558 * 0.51808 * 11 10 9 13 13 C 1.41215 * 120.17568 * 179.71901 * 12 11 10 14 14 H 1.08000 * 119.99752 * 160.77493 * 13 12 11 15 15 C 1.39890 * 120.00286 * 340.77142 * 13 12 11 16 16 N 1.30878 * 119.99983 * 327.08233 * 15 13 12 17 17 Si 1.86801 * 120.00146 * 147.07536 * 15 13 12 18 18 H 1.48496 * 109.46932 * 94.99084 * 17 15 13 19 19 H 1.48497 * 109.47048 * 214.99456 * 17 15 13 20 20 H 1.48503 * 109.46900 * 334.99198 * 17 15 13 21 21 C 1.40823 * 119.64323 * 359.73844 * 12 11 10 22 22 C 1.36436 * 119.81410 * 0.02562 * 21 12 11 23 23 C 1.52840 * 108.54500 * 299.95204 * 7 6 3 24 24 C 1.44794 * 112.17689 * 221.04376 * 2 1 3 25 25 C 1.53336 * 111.18252 * 52.23182 * 24 2 1 26 26 C 1.54502 * 108.20197 * 294.74979 * 24 2 1 27 27 H 1.09002 * 109.47041 * 59.99502 * 1 2 3 28 28 H 1.08999 * 109.47651 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46991 * 299.99855 * 1 2 3 30 30 H 1.08999 * 109.47623 * 300.02559 * 4 3 2 31 31 H 1.09001 * 109.47270 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.46804 * 60.02950 * 4 3 2 33 33 H 1.08994 * 109.47339 * 178.05571 * 5 3 2 34 34 H 1.09003 * 109.46520 * 298.05174 * 5 3 2 35 35 H 1.08999 * 109.47185 * 58.05098 * 5 3 2 36 36 H 1.09248 * 109.43144 * 169.61306 * 6 3 2 37 37 H 1.09241 * 109.44266 * 288.74741 * 6 3 2 38 38 H 1.08697 * 110.44952 * 61.18588 * 7 6 3 39 39 H 1.08001 * 119.90977 * 0.02695 * 10 9 8 40 40 H 1.07998 * 120.10097 * 180.25878 * 11 10 9 41 41 H 0.97003 * 119.99762 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.09493 * 180.02562 * 21 12 11 43 43 H 1.08000 * 119.90839 * 179.97438 * 22 21 12 44 44 H 1.09237 * 109.38168 * 180.60979 * 23 7 6 45 45 H 1.09235 * 109.37935 * 299.70481 * 23 7 6 46 46 H 1.09008 * 109.46690 * 185.53127 * 25 24 2 47 47 H 1.08993 * 109.46997 * 305.53430 * 25 24 2 48 48 H 1.09000 * 109.46993 * 65.53399 * 25 24 2 49 49 H 1.09004 * 109.46623 * 297.70327 * 26 24 2 50 50 H 1.09001 * 109.47082 * 57.70466 * 26 24 2 51 51 H 1.09001 * 109.46960 * 177.70470 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0157 1.3408 0.0000 4 6 1.6307 2.0186 1.3340 5 6 1.4114 2.1852 -1.1284 6 6 3.5385 1.3642 -0.1047 7 6 4.0075 0.4671 -1.2497 8 8 5.4385 0.4900 -1.3110 9 6 6.0101 0.1459 -2.4923 10 6 7.3904 0.2487 -2.6499 11 6 7.9736 -0.0999 -3.8331 12 6 7.1748 -0.5543 -4.9003 13 6 7.7696 -0.9115 -6.1303 14 1 7.2331 -1.5374 -6.8279 15 6 9.0538 -0.4545 -6.4451 16 7 9.4531 0.7179 -6.0221 17 14 10.1986 -1.5176 -7.4690 18 1 10.0933 -1.1251 -8.8973 19 1 11.5966 -1.3284 -7.0054 20 1 9.8160 -2.9446 -7.3183 21 6 5.7797 -0.6500 -4.7344 22 6 5.2127 -0.3021 -3.5432 23 6 3.5387 -0.9608 -0.9719 24 6 2.0156 -1.0113 -0.8804 25 6 1.4138 -0.9054 -2.2868 26 6 1.6287 -2.3985 -0.3209 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.5450 2.0562 1.4225 31 1 2.0323 3.0316 1.3560 32 1 2.0434 1.4460 2.1648 33 1 1.8153 3.1965 -1.0816 34 1 1.6616 1.7382 -2.0905 35 1 0.3279 2.2210 -1.0151 36 1 3.8747 2.3878 -0.2854 37 1 3.9729 1.0114 0.8334 38 1 3.6085 0.8205 -2.1970 39 1 8.0011 0.6011 -1.8319 40 1 9.0443 -0.0237 -3.9524 41 1 10.3437 1.0346 -6.2401 42 1 5.1602 -0.9979 -5.5478 43 1 4.1429 -0.3745 -3.4144 44 1 3.8764 -1.6165 -1.7777 45 1 3.9711 -1.3077 -0.0307 46 1 1.7684 -1.7360 -2.8972 47 1 0.3265 -0.9415 -2.2204 48 1 1.7189 0.0366 -2.7426 49 1 2.0738 -2.5293 0.6655 50 1 0.5439 -2.4689 -0.2423 51 1 1.9957 -3.1758 -0.9912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:59 Heat of formation + Delta-G solvation = -32.366916 kcal Electronic energy + Delta-G solvation = -28100.089509 eV Core-core repulsion = 24577.599349 eV Total energy + Delta-G solvation = -3522.490160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71917 -40.12136 -38.13801 -36.16523 -35.35846 -33.82004 -31.56453 -31.05067 -29.99208 -28.66951 -27.59145 -27.43555 -27.02332 -26.46192 -23.74430 -22.61865 -21.78231 -21.61317 -19.32686 -18.95706 -18.30119 -17.14314 -16.98139 -16.95639 -16.06700 -15.81980 -15.77258 -15.32367 -15.26779 -14.71009 -14.56428 -14.36301 -14.21440 -14.04346 -13.86460 -13.75298 -13.69060 -13.46169 -13.16254 -12.85833 -12.79013 -12.73439 -12.60834 -12.52260 -12.42081 -12.34812 -12.25944 -12.16913 -12.01071 -11.80466 -11.66091 -11.59926 -11.32121 -11.14728 -10.95585 -10.73290 -9.57132 -9.04978 -8.83920 -8.71044 -6.18146 0.95804 1.00638 1.37580 1.47178 1.57389 2.19618 2.54165 2.63444 2.77924 3.65222 3.66763 3.73011 3.86545 3.91789 4.00417 4.13165 4.28368 4.31264 4.31693 4.35638 4.40919 4.50232 4.67781 4.72830 4.74189 4.77356 4.80768 4.84960 4.88406 4.89785 4.94400 4.99575 5.00625 5.04957 5.08734 5.12446 5.14596 5.16005 5.22285 5.24905 5.30267 5.34804 5.41754 5.51146 5.57439 5.63184 5.90559 6.03591 6.23889 6.39396 6.53492 6.62444 6.80894 6.90573 7.11636 8.23139 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.003032 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.616664 B = 9233.500932 C = 9691.095927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.576 5.576 3 C 0.149 3.851 4 C -0.134 4.134 5 C -0.182 4.182 6 C -0.101 4.101 7 C 0.091 3.909 8 O -0.334 6.334 9 C -0.009 4.009 10 C -0.125 4.125 11 C -0.171 4.171 12 C 0.065 3.935 13 C -0.509 4.509 14 H 0.077 0.923 15 C 0.049 3.951 16 N -0.806 5.806 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.259 1.259 21 C -0.220 4.220 22 C -0.153 4.153 23 C -0.127 4.127 24 C 0.150 3.850 25 C -0.181 4.181 26 C -0.137 4.137 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.292 0.708 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.042 0.958 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -0.285 11.458 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.300 5.300 3 C 0.059 3.941 4 C -0.192 4.192 5 C -0.241 4.241 6 C -0.139 4.139 7 C 0.035 3.965 8 O -0.251 6.251 9 C -0.053 4.053 10 C -0.143 4.143 11 C -0.190 4.190 12 C 0.062 3.938 13 C -0.537 4.537 14 H 0.095 0.905 15 C -0.169 4.169 16 N -0.430 5.430 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.183 1.183 21 C -0.240 4.240 22 C -0.171 4.171 23 C -0.165 4.165 24 C 0.060 3.940 25 C -0.240 4.240 26 C -0.195 4.195 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.921 -0.166 11.989 19.931 hybrid contribution 0.653 -0.009 -1.640 1.765 sum -15.268 -0.175 10.349 18.446 Atomic orbital electron populations 1.22333 0.84633 1.02723 1.01061 1.56561 1.07565 1.08163 1.57747 1.20350 0.91191 0.86420 0.96120 1.22237 1.02176 0.99718 0.95067 1.22707 1.02214 1.00599 0.98577 1.21655 0.95305 0.99364 0.97540 1.22219 0.78812 0.96526 0.98962 1.85922 1.21918 1.85517 1.31727 1.18558 0.92181 1.08303 0.86261 1.19953 0.92207 1.04349 0.97833 1.20663 0.98757 1.07042 0.92564 1.17842 0.91641 0.90761 0.93521 1.19641 1.01321 1.29691 1.03001 0.90520 1.26739 0.99541 0.94434 0.96194 1.69973 1.19971 1.15843 1.37223 0.85382 0.77207 0.79782 0.78523 1.18408 1.18844 1.18318 1.20680 0.94346 1.11345 0.97601 1.20633 0.98404 1.04200 0.93890 1.22111 0.95703 0.96435 1.02282 1.20300 0.91477 0.92170 0.90024 1.22718 1.02063 1.01495 0.97678 1.22288 1.02201 0.94029 1.00980 0.95173 0.90492 0.90347 0.91094 0.91779 0.92299 0.91757 0.94124 0.90671 0.90911 0.90828 0.92738 0.87438 0.88118 0.89707 0.88156 0.86313 0.92260 0.91367 0.92472 0.90671 0.93901 0.92367 0.90825 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 7.53 127.69 0.96 1.53 16 2 N -0.58 -11.38 3.54 -827.10 -2.93 -14.31 16 3 C 0.15 3.05 0.69 4.43 0.00 3.05 16 4 C -0.13 -2.17 8.11 72.49 0.59 -1.58 16 5 C -0.18 -3.61 7.58 72.10 0.55 -3.06 16 6 C -0.10 -2.67 4.31 30.42 0.13 -2.54 16 7 C 0.09 2.98 1.96 30.49 0.06 3.04 16 8 O -0.33 -13.96 9.79 -89.86 -0.88 -14.84 16 9 C -0.01 -0.44 6.60 22.79 0.15 -0.29 16 10 C -0.12 -6.27 9.92 22.11 0.22 -6.05 16 11 C -0.17 -9.32 8.76 22.49 0.20 -9.12 16 12 C 0.06 3.59 5.60 -21.28 -0.12 3.47 16 13 C -0.51 -27.93 8.95 23.40 0.21 -27.72 16 14 H 0.08 4.08 8.02 -2.91 -0.02 4.05 16 15 C 0.05 2.51 4.79 85.24 0.41 2.92 16 16 N -0.81 -42.38 11.63 21.82 0.25 -42.12 16 17 Si 0.97 38.08 29.66 68.60 2.03 40.12 16 18 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 21 C -0.22 -11.21 9.74 22.48 0.22 -10.99 16 22 C -0.15 -7.05 8.08 22.11 0.18 -6.87 16 23 C -0.13 -3.74 3.89 30.43 0.12 -3.63 16 24 C 0.15 3.37 0.68 4.44 0.00 3.37 16 25 C -0.18 -4.03 7.74 72.09 0.56 -3.47 16 26 C -0.14 -2.64 8.21 72.49 0.60 -2.04 16 27 H 0.03 0.45 5.70 -2.39 -0.01 0.43 16 28 H 0.08 1.01 5.80 -2.39 -0.01 1.00 16 29 H 0.08 0.97 6.41 -2.39 -0.02 0.95 16 30 H 0.07 0.93 6.48 -2.39 -0.02 0.92 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.04 0.95 5.11 -2.39 -0.01 0.94 16 35 H 0.07 1.23 6.42 -2.39 -0.02 1.22 16 36 H 0.07 1.93 8.04 -2.26 -0.02 1.91 16 37 H 0.07 1.98 8.07 -2.26 -0.02 1.96 16 38 H 0.05 1.90 4.56 -2.55 -0.01 1.89 16 39 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.10 5.62 6.35 -2.91 -0.02 5.60 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.12 4.81 5.36 -2.91 -0.02 4.79 16 44 H 0.06 1.96 6.65 -2.26 -0.02 1.95 16 45 H 0.07 2.07 8.05 -2.26 -0.02 2.05 16 46 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.07 1.38 6.66 -2.39 -0.02 1.36 16 48 H 0.04 1.08 5.05 -2.39 -0.01 1.06 16 49 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 50 H 0.07 1.14 6.09 -2.39 -0.01 1.12 16 51 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -60.51 371.11 4.43 -56.08 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.92 Total: 35.06 kcal Atomic # 6 Polarization: -65.01 SS G_CDS: 5.03 Total: -59.98 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -2.67 Total: -56.43 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.88 Total: -14.84 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.12 kcal Total: -60.51 4.43 -56.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.710 kcal (2) G-P(sol) polarization free energy of solvation -60.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds