Wall clock time and date at job start Tue Mar 31 2020 12:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46879 * 2 1 4 4 C 1.50701 * 109.46719 * 119.99871 * 2 1 3 5 5 C 1.38146 * 120.02966 * 300.29312 * 4 2 1 6 6 C 1.38274 * 120.05329 * 180.30378 * 5 4 2 7 7 C 1.38265 * 120.11242 * 359.68358 * 6 5 4 8 8 C 1.38142 * 120.05453 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02783 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46794 * 300.02196 * 9 8 7 11 11 C 1.52999 * 109.47164 * 60.01724 * 9 8 7 12 12 C 1.38732 * 119.94859 * 0.02562 * 8 7 6 13 13 O 1.35896 * 120.06007 * 180.02562 * 12 8 7 14 14 C 1.42905 * 117.00062 * 89.99611 * 13 12 8 15 15 C 1.53935 * 113.73498 * 248.76781 * 14 13 12 16 16 N 1.48186 * 86.10168 * 221.95978 * 15 14 13 17 17 C 1.46895 * 111.07427 * 137.52231 * 16 15 14 18 18 C 1.50708 * 109.46908 * 70.56351 * 17 16 15 19 19 H 1.07996 * 119.99785 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99722 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99558 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47370 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47025 * 120.00427 * 22 20 18 25 25 H 1.48506 * 109.46997 * 239.99616 * 22 20 18 26 26 C 1.47960 * 90.79916 * 24.59913 * 16 15 14 27 27 H 1.08993 * 109.47286 * 300.00194 * 1 2 3 28 28 H 1.08999 * 109.47065 * 60.00096 * 1 2 3 29 29 H 1.09005 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47286 * 239.99806 * 2 1 3 31 31 H 1.09001 * 109.47147 * 299.99274 * 3 2 1 32 32 H 1.08997 * 109.47705 * 60.00119 * 3 2 1 33 33 H 1.09008 * 109.46810 * 179.97438 * 3 2 1 34 34 H 1.07998 * 119.97542 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.94325 * 179.69725 * 6 5 4 36 36 H 1.07997 * 119.97284 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47248 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47215 * 59.99990 * 10 9 8 39 39 H 1.08997 * 109.46496 * 179.97438 * 10 9 8 40 40 H 1.08994 * 109.46807 * 299.99639 * 10 9 8 41 41 H 1.09003 * 109.46545 * 60.00520 * 11 9 8 42 42 H 1.08995 * 109.47025 * 180.02562 * 11 9 8 43 43 H 1.09001 * 109.47432 * 300.00370 * 11 9 8 44 44 H 1.08998 * 112.93595 * 20.33807 * 14 13 12 45 45 H 1.09000 * 113.76137 * 336.24113 * 15 14 13 46 46 H 1.08998 * 113.75757 * 107.60309 * 15 14 13 47 47 H 1.08999 * 109.47345 * 190.56501 * 17 16 15 48 48 H 1.08996 * 109.46906 * 310.56784 * 17 16 15 49 49 H 0.96993 * 120.00194 * 180.02562 * 21 20 18 50 50 H 1.09001 * 113.75866 * 221.08211 * 26 16 15 51 51 H 1.09001 * 113.75942 * 89.72328 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6938 -0.2425 2.4855 6 6 2.1595 -0.8902 3.6149 7 6 2.9594 -2.0112 3.4914 8 6 3.2956 -2.4866 2.2387 9 6 4.1680 -3.7082 2.1048 10 6 5.5180 -3.4469 2.7757 11 6 3.4850 -4.8991 2.7802 12 6 2.8306 -1.8380 1.1039 13 8 3.1596 -2.3040 -0.1295 14 6 2.2797 -3.2654 -0.7157 15 6 2.8898 -4.6740 -0.8317 16 7 2.2695 -4.7218 -2.1767 17 6 3.1893 -5.3052 -3.1622 18 6 3.3436 -6.7802 -2.8938 19 1 2.8111 -7.2383 -2.0734 20 6 4.1644 -7.5446 -3.6956 21 7 4.8132 -6.9866 -4.6942 22 14 4.3550 -9.3729 -3.3633 23 1 3.5261 -9.7521 -2.1910 24 1 3.9107 -10.1414 -4.5538 25 1 5.7805 -9.6787 -3.0807 26 6 2.2759 -3.2443 -2.2549 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.0694 0.6331 2.5846 35 1 1.8979 -0.5200 4.5951 36 1 3.3215 -2.5156 4.3750 37 1 4.3238 -3.9295 1.0489 38 1 5.3623 -3.2256 3.8316 39 1 6.1487 -4.3306 2.6792 40 1 6.0046 -2.5985 2.2945 41 1 2.5232 -5.0853 2.3022 42 1 4.1161 -5.7825 2.6837 43 1 3.3292 -4.6779 3.8361 44 1 1.2832 -3.2539 -0.2744 45 1 3.9797 -4.6804 -0.8504 46 1 2.4711 -5.3932 -0.1279 47 1 2.7883 -5.1584 -4.1650 48 1 4.1614 -4.8183 -3.0847 49 1 5.3903 -7.5245 -5.2585 50 1 1.3676 -2.8234 -2.6862 51 1 3.1858 -2.8316 -2.6907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227325599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:27 Heat of formation + Delta-G solvation = -3.656999 kcal Electronic energy + Delta-G solvation = -27874.818205 eV Core-core repulsion = 24353.573000 eV Total energy + Delta-G solvation = -3521.245205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62356 -38.96015 -36.50991 -36.43397 -34.20860 -32.85117 -29.88870 -29.18758 -28.71090 -27.21988 -27.08887 -25.70154 -25.01790 -23.98811 -22.56123 -21.45102 -21.17793 -19.38719 -18.88598 -17.91203 -16.59960 -16.26357 -15.84546 -15.56620 -14.77739 -14.41200 -14.34298 -14.22206 -14.06208 -13.82938 -13.64334 -13.55976 -13.21859 -12.62614 -12.50334 -12.39285 -12.32846 -12.22053 -12.13964 -12.01085 -11.76654 -11.64723 -11.47802 -11.31730 -11.24350 -11.02024 -10.92605 -10.75125 -10.64268 -10.51138 -10.44150 -10.25734 -9.71410 -9.33269 -9.15518 -8.62180 -8.52462 -8.45265 -7.82414 -6.05932 -4.07804 1.22897 1.32105 3.29305 3.36685 3.41353 3.45397 4.02790 4.41098 4.52250 4.65981 4.78734 4.83209 4.93900 4.99728 5.11613 5.13559 5.22386 5.28215 5.29707 5.31667 5.33830 5.42033 5.48624 5.52647 5.62276 5.67653 5.72660 5.72812 5.87989 5.88860 5.95682 5.98241 6.02735 6.09220 6.12604 6.15351 6.17231 6.17645 6.28807 6.30797 6.37053 6.45056 6.46776 6.56487 6.64148 6.70651 6.84274 7.21340 7.61455 7.80890 7.86059 8.08649 8.39508 8.99507 9.56711 11.05400 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003786 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.054257 B = 7394.859124 C = 8735.872078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.092 4.092 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.110 4.110 8 C -0.085 4.085 9 C -0.065 4.065 10 C -0.139 4.139 11 C -0.142 4.142 12 C 0.105 3.895 13 O -0.323 6.323 14 C 0.061 3.939 15 C 0.009 3.991 16 N -0.474 5.474 17 C 0.164 3.836 18 C -0.510 4.510 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.003 3.997 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.001 0.999 49 H 0.261 0.739 50 H 0.083 0.917 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 14.834 16.332 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.092 4.092 5 C -0.130 4.130 6 C -0.145 4.145 7 C -0.128 4.128 8 C -0.086 4.086 9 C -0.083 4.083 10 C -0.197 4.197 11 C -0.199 4.199 12 C 0.061 3.939 13 O -0.239 6.239 14 C 0.005 3.995 15 C -0.120 4.120 16 N -0.199 5.199 17 C 0.037 3.963 18 C -0.548 4.548 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.051 0.949 48 H 0.019 0.981 49 H 0.071 0.929 50 H 0.101 0.899 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.417 14.459 15.944 22.195 hybrid contribution 0.869 -0.694 0.183 1.127 sum -4.549 13.765 16.127 21.685 Atomic orbital electron populations 1.21849 0.94468 1.01976 1.01643 1.20060 0.95612 0.95942 0.96164 1.21806 1.01317 0.95020 1.01502 1.20145 0.97414 0.96321 0.95362 1.20802 1.00558 1.00128 0.91474 1.21059 0.98825 0.96311 0.98328 1.20839 0.98748 0.96702 0.96534 1.20200 0.98849 0.97045 0.92475 1.20178 0.93728 0.91863 1.02562 1.21808 0.96101 1.01779 0.99965 1.21842 1.00837 0.97302 0.99916 1.18448 0.96859 0.93569 0.85049 1.86121 1.49863 1.59427 1.28470 1.24740 0.93032 0.87960 0.93781 1.24280 0.99319 0.94188 0.94215 1.68596 1.42867 1.05414 1.03015 1.20205 0.89299 0.95344 0.91402 1.21117 1.26408 0.92810 1.14506 0.91950 1.24983 0.95584 0.98851 0.95055 1.69962 1.29670 1.35972 1.18011 0.86450 0.77769 0.85017 0.78265 1.19643 1.20937 1.21033 1.24195 1.01915 0.93461 0.93076 0.92763 0.92327 0.92608 0.89374 0.92427 0.92836 0.92547 0.86154 0.86261 0.86062 0.88785 0.92943 0.92254 0.92661 0.92496 0.92095 0.92954 0.89434 0.90592 0.90261 0.94853 0.98131 0.92909 0.89855 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.00 37.16 0.33 -1.05 16 2 C -0.06 -0.67 3.06 -91.77 -0.28 -0.95 16 3 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 4 C -0.09 -1.14 4.79 -104.47 -0.50 -1.64 16 5 C -0.11 -1.19 8.71 -39.60 -0.34 -1.53 16 6 C -0.13 -1.29 10.04 -39.56 -0.40 -1.69 16 7 C -0.11 -1.23 8.71 -39.61 -0.35 -1.57 16 8 C -0.09 -1.11 4.79 -104.47 -0.50 -1.62 16 9 C -0.07 -0.85 3.06 -91.77 -0.28 -1.13 16 10 C -0.14 -1.59 9.01 37.16 0.33 -1.26 16 11 C -0.14 -1.68 9.01 37.16 0.33 -1.35 16 12 C 0.10 1.49 5.56 -39.21 -0.22 1.27 16 13 O -0.32 -5.18 7.82 -19.41 -0.15 -5.33 16 14 C 0.06 1.00 4.27 -25.80 -0.11 0.89 16 15 C 0.01 0.17 6.02 -2.63 -0.02 0.16 16 16 N -0.47 -10.36 6.25 -239.76 -1.50 -11.86 16 17 C 0.16 4.30 4.58 -4.97 -0.02 4.28 16 18 C -0.51 -14.44 8.84 -34.43 -0.30 -14.74 16 19 H 0.06 1.76 7.80 -52.49 -0.41 1.35 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.00 0.05 7.81 -2.76 -0.02 0.03 16 27 H 0.05 0.47 7.37 -51.93 -0.38 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.15 6.79 -51.93 -0.35 0.79 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.46 7.41 -51.93 -0.38 0.07 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.12 1.05 7.10 -52.49 -0.37 0.67 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.14 7.10 -52.49 -0.37 0.77 16 37 H 0.09 1.45 4.80 -51.93 -0.25 1.20 16 38 H 0.05 0.52 7.39 -51.93 -0.38 0.13 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.53 7.39 -51.93 -0.38 0.15 16 44 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 45 H 0.08 1.58 7.11 -51.93 -0.37 1.21 16 46 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 47 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.00 0.02 7.70 -51.93 -0.40 -0.38 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 51 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -30.11 399.61 -11.10 -41.21 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -9.09 Total: 0.67 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.10 Total: -21.39 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.76 Total: -37.86 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.15 Total: -5.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.11 -11.10 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227325599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.552 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds