Wall clock time and date at job start Tue Mar 31 2020 12:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46879 * 2 1 4 4 C 1.50701 * 109.46719 * 119.99871 * 2 1 3 5 5 C 1.38146 * 120.02966 * 300.29312 * 4 2 1 6 6 C 1.38274 * 120.05329 * 180.30378 * 5 4 2 7 7 C 1.38265 * 120.11242 * 359.68358 * 6 5 4 8 8 C 1.38142 * 120.05453 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.02783 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46794 * 300.02196 * 9 8 7 11 11 C 1.52999 * 109.47164 * 60.01724 * 9 8 7 12 12 C 1.38732 * 119.94859 * 0.02562 * 8 7 6 13 13 O 1.35896 * 120.06007 * 180.02562 * 12 8 7 14 14 C 1.42905 * 117.00062 * 89.99611 * 13 12 8 15 15 C 1.53935 * 113.73498 * 248.76781 * 14 13 12 16 16 N 1.48186 * 86.10168 * 221.95978 * 15 14 13 17 17 C 1.46895 * 111.07427 * 137.52231 * 16 15 14 18 18 C 1.50708 * 109.46908 * 70.56351 * 17 16 15 19 19 H 1.07996 * 119.99785 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99722 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99558 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47370 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47025 * 120.00427 * 22 20 18 25 25 H 1.48506 * 109.46997 * 239.99616 * 22 20 18 26 26 C 1.47960 * 90.79916 * 24.59913 * 16 15 14 27 27 H 1.08993 * 109.47286 * 300.00194 * 1 2 3 28 28 H 1.08999 * 109.47065 * 60.00096 * 1 2 3 29 29 H 1.09005 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47286 * 239.99806 * 2 1 3 31 31 H 1.09001 * 109.47147 * 299.99274 * 3 2 1 32 32 H 1.08997 * 109.47705 * 60.00119 * 3 2 1 33 33 H 1.09008 * 109.46810 * 179.97438 * 3 2 1 34 34 H 1.07998 * 119.97542 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.94325 * 179.69725 * 6 5 4 36 36 H 1.07997 * 119.97284 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47248 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47215 * 59.99990 * 10 9 8 39 39 H 1.08997 * 109.46496 * 179.97438 * 10 9 8 40 40 H 1.08994 * 109.46807 * 299.99639 * 10 9 8 41 41 H 1.09003 * 109.46545 * 60.00520 * 11 9 8 42 42 H 1.08995 * 109.47025 * 180.02562 * 11 9 8 43 43 H 1.09001 * 109.47432 * 300.00370 * 11 9 8 44 44 H 1.08998 * 112.93595 * 20.33807 * 14 13 12 45 45 H 1.09000 * 113.76137 * 336.24113 * 15 14 13 46 46 H 1.08998 * 113.75757 * 107.60309 * 15 14 13 47 47 H 1.08999 * 109.47345 * 190.56501 * 17 16 15 48 48 H 1.08996 * 109.46906 * 310.56784 * 17 16 15 49 49 H 0.96993 * 120.00194 * 180.02562 * 21 20 18 50 50 H 1.09001 * 113.75866 * 221.08211 * 26 16 15 51 51 H 1.09001 * 113.75942 * 89.72328 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6938 -0.2425 2.4855 6 6 2.1595 -0.8902 3.6149 7 6 2.9594 -2.0112 3.4914 8 6 3.2956 -2.4866 2.2387 9 6 4.1680 -3.7082 2.1048 10 6 5.5180 -3.4469 2.7757 11 6 3.4850 -4.8991 2.7802 12 6 2.8306 -1.8380 1.1039 13 8 3.1596 -2.3040 -0.1295 14 6 2.2797 -3.2654 -0.7157 15 6 2.8898 -4.6740 -0.8317 16 7 2.2695 -4.7218 -2.1767 17 6 3.1893 -5.3052 -3.1622 18 6 3.3436 -6.7802 -2.8938 19 1 2.8111 -7.2383 -2.0734 20 6 4.1644 -7.5446 -3.6956 21 7 4.8132 -6.9866 -4.6942 22 14 4.3550 -9.3729 -3.3633 23 1 3.5261 -9.7521 -2.1910 24 1 3.9107 -10.1414 -4.5538 25 1 5.7805 -9.6787 -3.0807 26 6 2.2759 -3.2443 -2.2549 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.0694 0.6331 2.5846 35 1 1.8979 -0.5200 4.5951 36 1 3.3215 -2.5156 4.3750 37 1 4.3238 -3.9295 1.0489 38 1 5.3623 -3.2256 3.8316 39 1 6.1487 -4.3306 2.6792 40 1 6.0046 -2.5985 2.2945 41 1 2.5232 -5.0853 2.3022 42 1 4.1161 -5.7825 2.6837 43 1 3.3292 -4.6779 3.8361 44 1 1.2832 -3.2539 -0.2744 45 1 3.9797 -4.6804 -0.8504 46 1 2.4711 -5.3932 -0.1279 47 1 2.7883 -5.1584 -4.1650 48 1 4.1614 -4.8183 -3.0847 49 1 5.3903 -7.5245 -5.2585 50 1 1.3676 -2.8234 -2.6862 51 1 3.1858 -2.8316 -2.6907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227325599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:26 Heat of formation + Delta-G solvation = -19.986746 kcal Electronic energy + Delta-G solvation = -27875.526316 eV Core-core repulsion = 24353.573000 eV Total energy + Delta-G solvation = -3521.953316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74287 -40.35418 -37.71002 -37.39551 -35.08313 -35.01047 -31.40899 -30.12120 -30.04980 -28.04873 -27.97409 -27.36850 -26.81264 -24.87816 -23.96753 -22.88604 -22.13496 -20.93229 -19.80155 -19.10322 -18.56162 -17.45355 -17.20588 -16.80610 -16.33071 -15.98960 -15.49601 -15.16367 -15.14275 -15.03871 -14.72388 -14.68038 -14.21680 -14.08655 -13.92181 -13.75440 -13.53381 -13.30344 -13.24050 -13.07827 -13.05376 -12.90946 -12.75390 -12.62996 -12.51053 -12.25200 -12.21309 -12.11884 -11.91698 -11.67615 -11.59723 -11.48171 -11.38868 -11.19244 -10.68828 -10.59802 -9.75232 -9.49090 -9.36385 -8.26433 -6.37456 0.29014 0.44612 1.37921 1.38500 1.52416 2.35324 2.43925 2.97818 3.06706 3.19497 3.46013 3.62863 3.79949 3.93395 3.97096 4.10337 4.15844 4.29954 4.32294 4.33991 4.45042 4.49008 4.51370 4.56898 4.57541 4.60973 4.69202 4.78143 4.80264 4.82190 4.84575 4.89182 4.93790 4.95692 4.99224 5.02344 5.10720 5.14682 5.16661 5.26187 5.32879 5.35610 5.37098 5.40138 5.46983 5.61416 5.66082 5.71434 5.76438 5.94581 6.04851 6.31165 6.67053 6.76905 7.32499 8.85805 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003786 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.054257 B = 7394.859124 C = 8735.872078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.095 4.095 9 C -0.067 4.067 10 C -0.135 4.135 11 C -0.137 4.137 12 C 0.066 3.934 13 O -0.333 6.333 14 C 0.090 3.910 15 C 0.011 3.989 16 N -0.487 5.487 17 C 0.180 3.820 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.003 3.997 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.006 0.994 48 H -0.028 1.028 49 H 0.266 0.734 50 H 0.106 0.894 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 15.566 19.270 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.192 4.192 4 C -0.097 4.097 5 C -0.131 4.131 6 C -0.134 4.134 7 C -0.132 4.132 8 C -0.095 4.095 9 C -0.086 4.086 10 C -0.192 4.192 11 C -0.194 4.194 12 C 0.022 3.978 13 O -0.249 6.249 14 C 0.034 3.966 15 C -0.117 4.117 16 N -0.211 5.211 17 C 0.053 3.947 18 C -0.567 4.567 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.573 5.573 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.126 4.126 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.024 0.976 48 H -0.010 1.010 49 H 0.075 0.925 50 H 0.124 0.876 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.714 15.209 18.894 25.167 hybrid contribution 1.271 -0.806 -0.664 1.644 sum -5.443 14.403 18.231 23.863 Atomic orbital electron populations 1.21818 0.93112 1.01629 1.02917 1.20066 0.96692 0.96444 0.94788 1.21776 1.00396 0.94205 1.02831 1.20327 0.96947 0.95713 0.96669 1.21114 1.00449 1.00766 0.90725 1.21472 0.97104 0.95196 0.99675 1.21097 0.98751 0.97193 0.96163 1.20289 0.99012 0.97059 0.93161 1.20134 0.94872 0.92697 1.00889 1.21774 0.95126 1.01356 1.00944 1.21803 0.99918 0.96736 1.00965 1.18769 0.99421 0.95210 0.84359 1.86108 1.49905 1.58955 1.29946 1.24266 0.93241 0.86455 0.92612 1.24206 0.98032 0.96690 0.92820 1.68482 1.41605 1.07832 1.03155 1.19838 0.88524 0.94990 0.91317 1.21401 1.26774 0.93844 1.14666 0.92128 1.25933 0.94930 1.04031 0.94581 1.70087 1.30229 1.38032 1.18928 0.85316 0.78081 0.78637 0.78506 1.18699 1.20106 1.20186 1.24225 1.02367 0.91048 0.94960 0.91072 0.91478 0.93738 0.91944 0.91510 0.91091 0.93960 0.83657 0.82988 0.84015 0.92105 0.90761 0.92200 0.93774 0.93735 0.92325 0.90720 0.88082 0.92844 0.89769 0.97631 1.01042 0.92524 0.87555 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.00 71.98 0.65 -1.76 16 2 C -0.06 -1.31 3.06 -11.54 -0.04 -1.35 16 3 C -0.13 -2.40 9.01 71.98 0.65 -1.75 16 4 C -0.10 -2.24 4.79 -19.77 -0.09 -2.34 16 5 C -0.11 -2.03 8.71 22.26 0.19 -1.84 16 6 C -0.12 -1.92 10.04 22.28 0.22 -1.69 16 7 C -0.11 -2.22 8.71 22.25 0.19 -2.02 16 8 C -0.09 -2.40 4.79 -19.77 -0.09 -2.49 16 9 C -0.07 -1.76 3.06 -11.54 -0.04 -1.80 16 10 C -0.13 -3.01 9.01 71.98 0.65 -2.36 16 11 C -0.14 -3.16 9.01 71.98 0.65 -2.51 16 12 C 0.07 1.86 5.56 22.51 0.13 1.98 16 13 O -0.33 -11.13 7.82 -92.38 -0.72 -11.85 16 14 C 0.09 3.08 4.27 31.24 0.13 3.21 16 15 C 0.01 0.47 6.02 86.37 0.52 0.99 16 16 N -0.49 -22.23 6.25 -915.69 -5.72 -27.95 16 17 C 0.18 10.05 4.58 85.56 0.39 10.45 16 18 C -0.53 -30.98 8.84 25.60 0.23 -30.75 16 19 H 0.06 3.49 7.80 -2.91 -0.02 3.47 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 22 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.00 0.11 7.81 86.41 0.67 0.78 16 27 H 0.07 1.00 7.37 -2.39 -0.02 0.98 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 1.65 6.79 -2.39 -0.02 1.63 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.00 7.41 -2.39 -0.02 0.98 16 33 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.15 1.87 7.10 -2.91 -0.02 1.85 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.14 2.12 7.10 -2.91 -0.02 2.10 16 37 H 0.06 1.99 4.80 -2.39 -0.01 1.98 16 38 H 0.07 1.31 7.39 -2.39 -0.02 1.29 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.36 7.39 -2.39 -0.02 1.34 16 44 H 0.10 3.17 7.97 -2.39 -0.02 3.15 16 45 H 0.05 2.41 7.11 -2.39 -0.02 2.39 16 46 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 47 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 48 H -0.03 -1.69 7.70 -2.39 -0.02 -1.71 16 49 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 51 H 0.06 2.39 7.79 -2.39 -0.02 2.38 16 Total: -1.00 -67.64 399.61 2.22 -65.41 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.88 Total: 18.92 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 5.48 Total: -34.59 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -5.44 Total: -84.92 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.72 Total: -11.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.64 2.22 -65.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227325599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.427 kcal (2) G-P(sol) polarization free energy of solvation -67.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds