Wall clock time and date at job start Tue Mar 31 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46706 * 2 1 4 4 C 1.50694 * 109.46949 * 119.99802 * 2 1 3 5 5 C 1.38140 * 120.03156 * 300.29615 * 4 2 1 6 6 C 1.38273 * 120.05506 * 180.29732 * 5 4 2 7 7 C 1.38262 * 120.11217 * 359.68982 * 6 5 4 8 8 C 1.38148 * 120.05419 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02395 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47487 * 302.98508 * 9 8 7 11 11 C 1.53002 * 109.46701 * 62.98577 * 9 8 7 12 12 C 1.38727 * 119.94645 * 0.02562 * 8 7 6 13 13 O 1.35895 * 120.05778 * 179.97438 * 12 8 7 14 14 C 1.42905 * 116.99817 * 95.77168 * 13 12 8 15 15 H 1.09002 * 110.64354 * 18.21128 * 14 13 12 16 16 C 1.55155 * 110.71954 * 141.34938 * 14 13 12 17 17 C 1.54913 * 101.57952 * 153.86388 * 16 14 13 18 18 N 1.47420 * 104.83470 * 322.99190 * 17 16 14 19 19 C 1.36939 * 125.64572 * 204.09430 * 18 17 16 20 20 H 1.08007 * 119.99478 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00296 * 0.02562 * 19 18 17 22 22 N 1.31611 * 119.99897 * 359.73577 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46916 * 90.00660 * 23 21 19 25 25 H 1.48501 * 109.46914 * 210.00509 * 23 21 19 26 26 H 1.48495 * 109.47146 * 330.00388 * 23 21 19 27 27 C 1.47020 * 108.70163 * 24.35474 * 18 17 16 28 28 H 1.08996 * 109.46950 * 299.99855 * 1 2 3 29 29 H 1.09001 * 109.47048 * 60.00438 * 1 2 3 30 30 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47351 * 240.00384 * 2 1 3 32 32 H 1.09002 * 109.46852 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47382 * 299.99773 * 3 2 1 34 34 H 1.08996 * 109.47298 * 60.00358 * 3 2 1 35 35 H 1.07999 * 119.97628 * 0.02725 * 5 4 2 36 36 H 1.08001 * 119.94007 * 179.69713 * 6 5 4 37 37 H 1.07999 * 119.97188 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.46689 * 182.97899 * 9 8 7 39 39 H 1.08993 * 109.47236 * 59.99571 * 10 9 8 40 40 H 1.08999 * 109.46862 * 180.02562 * 10 9 8 41 41 H 1.09004 * 109.47190 * 299.99786 * 10 9 8 42 42 H 1.08998 * 109.47688 * 59.99915 * 11 9 8 43 43 H 1.09008 * 109.47002 * 179.97438 * 11 9 8 44 44 H 1.08993 * 109.47205 * 299.99295 * 11 9 8 45 45 H 1.09009 * 111.00294 * 35.79440 * 16 14 13 46 46 H 1.08995 * 111.00847 * 271.94003 * 16 14 13 47 47 H 1.09009 * 110.36728 * 204.15090 * 17 16 14 48 48 H 1.08994 * 110.36674 * 81.83470 * 17 16 14 49 49 H 0.97007 * 120.00310 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.87856 * 118.12995 * 27 18 17 51 51 H 1.08997 * 109.88243 * 239.29202 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6939 -0.2425 2.4854 6 6 2.1596 -0.8903 3.6148 7 6 2.9595 -2.0113 3.4912 8 6 3.2959 -2.4865 2.2385 9 6 4.1673 -3.7088 2.1046 10 6 5.4888 -3.4759 2.8395 11 6 3.4505 -4.9153 2.7141 12 6 2.8308 -1.8378 1.1038 13 8 3.1608 -2.3031 -0.1296 14 6 2.2196 -3.1666 -0.7704 15 1 1.2360 -3.0720 -0.3102 16 6 2.1454 -2.8661 -2.2907 17 6 1.6811 -4.2318 -2.8554 18 7 2.3719 -5.2371 -2.0275 19 6 2.6543 -6.5232 -2.4037 20 1 3.1663 -7.1853 -1.7211 21 6 2.2826 -6.9758 -3.6622 22 7 1.6540 -6.1704 -4.4919 23 14 2.6672 -8.7304 -4.1750 24 1 1.5371 -9.6159 -3.7958 25 1 2.8662 -8.7839 -5.6456 26 1 3.9042 -9.1860 -3.4912 27 6 2.7018 -4.6321 -0.7288 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.0687 0.6325 2.5846 36 1 1.8979 -0.5200 4.5950 37 1 3.3216 -2.5157 4.3749 38 1 4.3665 -3.8992 1.0500 39 1 5.2895 -3.2855 3.8940 40 1 6.1192 -4.3598 2.7423 41 1 5.9995 -2.6164 2.4053 42 1 2.5090 -5.0813 2.1907 43 1 4.0806 -5.7995 2.6170 44 1 3.2512 -4.7249 3.7687 45 1 3.1252 -2.5937 -2.6834 46 1 1.4122 -2.0872 -2.4998 47 1 1.9780 -4.3314 -3.8996 48 1 0.6007 -4.3359 -2.7559 49 1 1.3945 -6.4866 -5.3716 50 1 2.1918 -5.1696 0.0707 51 1 3.7796 -4.6615 -0.5692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227325651.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:57 Heat of formation + Delta-G solvation = -10.293302 kcal Electronic energy + Delta-G solvation = -28343.867085 eV Core-core repulsion = 24822.334108 eV Total energy + Delta-G solvation = -3521.532977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46995 -37.91922 -36.44624 -35.92077 -34.13945 -32.28546 -29.71001 -29.12668 -28.93890 -27.28847 -27.13223 -26.84227 -24.52102 -23.91923 -22.28168 -21.22380 -20.26507 -20.09506 -18.82801 -17.76725 -16.98398 -16.27920 -15.70861 -15.00953 -14.58286 -14.53456 -14.26295 -14.15955 -13.94650 -13.66399 -13.53125 -13.16037 -13.05913 -12.53761 -12.39531 -12.37837 -12.32642 -12.18308 -11.89088 -11.73284 -11.72834 -11.47406 -11.23838 -11.17299 -10.99649 -10.95888 -10.81114 -10.68690 -10.48058 -10.39995 -10.36530 -10.10661 -9.74822 -9.55803 -9.24941 -8.66044 -8.54720 -8.34954 -6.84370 -5.66030 -3.07671 1.31551 1.39666 3.40352 3.45097 3.47170 3.54895 4.15054 4.50040 4.60366 4.73894 4.89357 5.06196 5.17871 5.21582 5.28922 5.32993 5.34507 5.38025 5.43321 5.48558 5.51652 5.55763 5.60313 5.69482 5.71923 5.75200 5.79736 5.80638 5.89741 5.92359 5.97193 6.02812 6.09334 6.18379 6.21558 6.25190 6.31459 6.36187 6.38460 6.51639 6.54047 6.55875 6.58678 6.67908 6.69284 6.80686 6.99435 7.47386 7.61898 7.81563 7.97112 8.34339 9.20876 9.81715 10.45691 11.38262 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.004237 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.285051 B = 6606.341898 C = 8093.529912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.094 4.094 5 C -0.111 4.111 6 C -0.129 4.129 7 C -0.111 4.111 8 C -0.085 4.085 9 C -0.065 4.065 10 C -0.139 4.139 11 C -0.141 4.141 12 C 0.107 3.893 13 O -0.323 6.323 14 C 0.085 3.915 15 H 0.064 0.936 16 C -0.143 4.143 17 C 0.153 3.847 18 N -0.601 5.601 19 C -0.221 4.221 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.124 3.876 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.111 0.889 48 H 0.013 0.987 49 H 0.252 0.748 50 H 0.023 0.977 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 13.201 14.661 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.196 4.196 4 C -0.094 4.094 5 C -0.130 4.130 6 C -0.147 4.147 7 C -0.129 4.129 8 C -0.085 4.085 9 C -0.084 4.084 10 C -0.196 4.196 11 C -0.199 4.199 12 C 0.063 3.937 13 O -0.240 6.240 14 C 0.029 3.971 15 H 0.082 0.918 16 C -0.181 4.181 17 C 0.029 3.971 18 N -0.328 5.328 19 C -0.349 4.349 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.002 4.002 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.129 0.871 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.041 0.959 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.840 13.086 14.371 19.454 hybrid contribution -0.111 -0.932 -0.012 0.939 sum 0.729 12.154 14.360 18.827 Atomic orbital electron populations 1.21854 0.94482 1.02042 1.01601 1.20105 0.95651 0.95956 0.96309 1.21799 1.01253 0.95047 1.01459 1.20176 0.97684 0.96221 0.95368 1.20794 1.00526 1.00139 0.91493 1.21041 0.98938 0.96412 0.98276 1.20828 0.98821 0.96737 0.96488 1.20162 0.99117 0.96833 0.92390 1.20192 0.93709 0.91827 1.02627 1.21810 0.96411 1.01654 0.99728 1.21847 1.00846 0.97050 1.00116 1.18471 0.96761 0.93258 0.85193 1.86048 1.45659 1.64826 1.27473 1.23516 0.90167 0.89790 0.93601 0.91807 1.23271 1.01673 1.00581 0.92617 1.21950 0.93974 0.82198 0.99013 1.44385 1.67829 1.10050 1.10524 1.19074 1.31315 0.86313 0.98209 0.90446 1.24776 1.00690 0.98450 0.96651 1.69771 1.45087 1.34068 1.08240 0.86070 0.77905 0.83869 0.77661 1.21642 1.21616 1.20656 1.21685 0.98080 0.90601 0.89872 0.92787 0.92304 0.92582 0.89169 0.92584 0.92442 0.92879 0.86205 0.86316 0.86109 0.88613 0.92954 0.92406 0.92719 0.92330 0.92278 0.93045 0.90966 0.91967 0.87097 0.96870 0.93690 0.95879 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.00 37.16 0.33 -1.25 16 2 C -0.06 -0.77 2.98 -91.77 -0.27 -1.05 16 3 C -0.14 -1.46 9.01 37.16 0.33 -1.13 16 4 C -0.09 -1.27 4.79 -104.48 -0.50 -1.77 16 5 C -0.11 -1.30 8.71 -39.60 -0.34 -1.64 16 6 C -0.13 -1.42 10.04 -39.56 -0.40 -1.81 16 7 C -0.11 -1.32 8.72 -39.61 -0.35 -1.67 16 8 C -0.08 -1.19 4.79 -104.47 -0.50 -1.69 16 9 C -0.07 -0.90 2.98 -91.77 -0.27 -1.18 16 10 C -0.14 -1.61 8.97 37.15 0.33 -1.28 16 11 C -0.14 -1.83 9.04 37.16 0.34 -1.50 16 12 C 0.11 1.66 5.50 -39.22 -0.22 1.44 16 13 O -0.32 -5.67 7.64 -19.41 -0.15 -5.82 16 14 C 0.08 1.59 2.98 -24.89 -0.07 1.52 16 15 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 16 C -0.14 -2.80 6.34 -24.58 -0.16 -2.96 16 17 C 0.15 3.75 5.88 -2.53 -0.01 3.73 16 18 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 19 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 20 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.12 2.68 6.34 -3.06 -0.02 2.66 16 28 H 0.05 0.53 7.37 -51.93 -0.38 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.30 5.81 -51.93 -0.30 1.00 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.49 7.41 -51.93 -0.38 0.11 16 35 H 0.12 1.15 7.10 -52.49 -0.37 0.78 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.22 7.10 -52.49 -0.37 0.84 16 38 H 0.10 1.57 4.69 -51.93 -0.24 1.32 16 39 H 0.05 0.53 7.23 -51.93 -0.38 0.15 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.85 7.18 -51.93 -0.37 0.48 16 43 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.05 0.57 7.57 -51.93 -0.39 0.18 16 45 H 0.07 1.45 8.14 -51.92 -0.42 1.02 16 46 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 47 H 0.11 3.03 5.88 -51.92 -0.31 2.72 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.02 0.50 7.18 -51.93 -0.37 0.13 16 51 H 0.04 0.79 6.51 -51.93 -0.34 0.45 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -29.67 388.07 -10.18 -39.85 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.81 Total: 1.79 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.03 Total: -16.31 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.02 Total: -42.43 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.15 Total: -5.82 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.67 -10.18 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227325651.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.552 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds