Wall clock time and date at job start Tue Mar 31 2020 12:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46706 * 2 1 4 4 C 1.50694 * 109.46949 * 119.99802 * 2 1 3 5 5 C 1.38140 * 120.03156 * 300.29615 * 4 2 1 6 6 C 1.38273 * 120.05506 * 180.29732 * 5 4 2 7 7 C 1.38262 * 120.11217 * 359.68982 * 6 5 4 8 8 C 1.38148 * 120.05419 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02395 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47487 * 302.98508 * 9 8 7 11 11 C 1.53002 * 109.46701 * 62.98577 * 9 8 7 12 12 C 1.38727 * 119.94645 * 0.02562 * 8 7 6 13 13 O 1.35895 * 120.05778 * 179.97438 * 12 8 7 14 14 C 1.42905 * 116.99817 * 95.77168 * 13 12 8 15 15 H 1.09002 * 110.64354 * 18.21128 * 14 13 12 16 16 C 1.55155 * 110.71954 * 141.34938 * 14 13 12 17 17 C 1.54913 * 101.57952 * 153.86388 * 16 14 13 18 18 N 1.47420 * 104.83470 * 322.99190 * 17 16 14 19 19 C 1.36939 * 125.64572 * 204.09430 * 18 17 16 20 20 H 1.08007 * 119.99478 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00296 * 0.02562 * 19 18 17 22 22 N 1.31611 * 119.99897 * 359.73577 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46916 * 90.00660 * 23 21 19 25 25 H 1.48501 * 109.46914 * 210.00509 * 23 21 19 26 26 H 1.48495 * 109.47146 * 330.00388 * 23 21 19 27 27 C 1.47020 * 108.70163 * 24.35474 * 18 17 16 28 28 H 1.08996 * 109.46950 * 299.99855 * 1 2 3 29 29 H 1.09001 * 109.47048 * 60.00438 * 1 2 3 30 30 H 1.09002 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47351 * 240.00384 * 2 1 3 32 32 H 1.09002 * 109.46852 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47382 * 299.99773 * 3 2 1 34 34 H 1.08996 * 109.47298 * 60.00358 * 3 2 1 35 35 H 1.07999 * 119.97628 * 0.02725 * 5 4 2 36 36 H 1.08001 * 119.94007 * 179.69713 * 6 5 4 37 37 H 1.07999 * 119.97188 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.46689 * 182.97899 * 9 8 7 39 39 H 1.08993 * 109.47236 * 59.99571 * 10 9 8 40 40 H 1.08999 * 109.46862 * 180.02562 * 10 9 8 41 41 H 1.09004 * 109.47190 * 299.99786 * 10 9 8 42 42 H 1.08998 * 109.47688 * 59.99915 * 11 9 8 43 43 H 1.09008 * 109.47002 * 179.97438 * 11 9 8 44 44 H 1.08993 * 109.47205 * 299.99295 * 11 9 8 45 45 H 1.09009 * 111.00294 * 35.79440 * 16 14 13 46 46 H 1.08995 * 111.00847 * 271.94003 * 16 14 13 47 47 H 1.09009 * 110.36728 * 204.15090 * 17 16 14 48 48 H 1.08994 * 110.36674 * 81.83470 * 17 16 14 49 49 H 0.97007 * 120.00310 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.87856 * 118.12995 * 27 18 17 51 51 H 1.08997 * 109.88243 * 239.29202 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6939 -0.2425 2.4854 6 6 2.1596 -0.8903 3.6148 7 6 2.9595 -2.0113 3.4912 8 6 3.2959 -2.4865 2.2385 9 6 4.1673 -3.7088 2.1046 10 6 5.4888 -3.4759 2.8395 11 6 3.4505 -4.9153 2.7141 12 6 2.8308 -1.8378 1.1038 13 8 3.1608 -2.3031 -0.1296 14 6 2.2196 -3.1666 -0.7704 15 1 1.2360 -3.0720 -0.3102 16 6 2.1454 -2.8661 -2.2907 17 6 1.6811 -4.2318 -2.8554 18 7 2.3719 -5.2371 -2.0275 19 6 2.6543 -6.5232 -2.4037 20 1 3.1663 -7.1853 -1.7211 21 6 2.2826 -6.9758 -3.6622 22 7 1.6540 -6.1704 -4.4919 23 14 2.6672 -8.7304 -4.1750 24 1 1.5371 -9.6159 -3.7958 25 1 2.8662 -8.7839 -5.6456 26 1 3.9042 -9.1860 -3.4912 27 6 2.7018 -4.6321 -0.7288 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.0687 0.6325 2.5846 36 1 1.8979 -0.5200 4.5950 37 1 3.3216 -2.5157 4.3749 38 1 4.3665 -3.8992 1.0500 39 1 5.2895 -3.2855 3.8940 40 1 6.1192 -4.3598 2.7423 41 1 5.9995 -2.6164 2.4053 42 1 2.5090 -5.0813 2.1907 43 1 4.0806 -5.7995 2.6170 44 1 3.2512 -4.7249 3.7687 45 1 3.1252 -2.5937 -2.6834 46 1 1.4122 -2.0872 -2.4998 47 1 1.9780 -4.3314 -3.8996 48 1 0.6007 -4.3359 -2.7559 49 1 1.3945 -6.4866 -5.3716 50 1 2.1918 -5.1696 0.0707 51 1 3.7796 -4.6615 -0.5692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227325651.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:56 Heat of formation + Delta-G solvation = -23.566043 kcal Electronic energy + Delta-G solvation = -28344.442634 eV Core-core repulsion = 24822.334108 eV Total energy + Delta-G solvation = -3522.108526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58253 -39.38914 -37.53309 -37.38677 -35.08577 -34.28293 -31.35677 -30.37221 -30.04794 -28.87938 -27.97928 -27.96354 -26.47341 -24.91305 -23.40454 -22.26078 -22.14604 -21.64065 -19.81323 -19.09830 -18.90996 -17.38867 -16.89751 -16.69120 -16.24921 -15.98597 -15.26168 -15.21481 -15.11695 -15.01752 -14.71976 -14.41266 -14.23900 -14.07358 -13.73827 -13.61574 -13.43471 -13.24284 -13.06951 -13.06310 -12.94817 -12.84130 -12.71399 -12.64052 -12.28968 -12.18484 -12.10039 -12.04098 -11.91922 -11.90001 -11.70754 -11.52423 -11.43445 -11.25213 -10.77812 -10.61776 -9.48880 -9.39778 -8.93901 -7.80378 -5.25637 0.29399 0.44839 1.45854 1.47938 1.56833 2.39986 2.52416 3.01404 3.30978 3.61998 3.64065 3.75790 3.82669 3.97234 4.01224 4.06301 4.11651 4.29565 4.31870 4.33004 4.38321 4.47741 4.53330 4.56677 4.60560 4.68728 4.76812 4.78871 4.81604 4.83964 4.90121 4.95210 4.96070 4.98525 5.02734 5.10049 5.15821 5.16756 5.26115 5.33523 5.36035 5.37918 5.39903 5.42534 5.54640 5.61128 5.66416 5.73584 5.77133 5.96189 6.25517 6.69769 7.06728 7.72410 8.36297 9.22084 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.004237 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.285051 B = 6606.341898 C = 8093.529912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.099 4.099 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.067 4.067 10 C -0.133 4.133 11 C -0.136 4.136 12 C 0.064 3.936 13 O -0.329 6.329 14 C 0.106 3.894 15 H 0.066 0.934 16 C -0.127 4.127 17 C 0.157 3.843 18 N -0.622 5.622 19 C -0.242 4.242 20 H 0.079 0.921 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.270 1.270 27 C 0.128 3.872 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.081 0.919 48 H -0.006 1.006 49 H 0.249 0.751 50 H 0.022 0.978 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 14.592 17.356 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.190 4.190 4 C -0.099 4.099 5 C -0.131 4.131 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.095 4.095 9 C -0.085 4.085 10 C -0.190 4.190 11 C -0.193 4.193 12 C 0.021 3.979 13 O -0.246 6.246 14 C 0.050 3.950 15 H 0.084 0.916 16 C -0.165 4.165 17 C 0.033 3.967 18 N -0.349 5.349 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.195 1.195 27 C 0.002 3.998 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.012 0.988 49 H 0.059 0.941 50 H 0.040 0.960 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.636 14.494 17.093 22.420 hybrid contribution -0.043 -1.308 -0.744 1.506 sum 0.594 13.186 16.349 21.012 Atomic orbital electron populations 1.21830 0.93419 1.01327 1.03013 1.20114 0.96493 0.96741 0.94934 1.21761 1.00505 0.93912 1.02844 1.20364 0.97185 0.95628 0.96727 1.21116 1.00447 1.00837 0.90732 1.21475 0.97099 0.95248 0.99654 1.21108 0.98791 0.97217 0.96131 1.20288 0.99254 0.96877 0.93065 1.20138 0.95065 0.92357 1.00943 1.21764 0.95103 1.01550 1.00574 1.21801 0.99566 0.96851 1.01117 1.18818 0.99568 0.94986 0.84514 1.86041 1.45255 1.64337 1.28985 1.23087 0.90465 0.88293 0.93142 0.91554 1.23051 1.01868 0.98462 0.93118 1.21718 0.92763 0.84592 0.97677 1.44677 1.67907 1.10007 1.12334 1.19427 1.31481 0.87507 0.98652 0.90319 1.25630 1.00782 1.02473 0.96626 1.70013 1.45826 1.35639 1.08251 0.85034 0.77998 0.79070 0.76957 1.21210 1.21663 1.19499 1.21729 0.97591 0.92483 0.87983 0.90907 0.91384 0.94317 0.91789 0.93713 0.91472 0.91078 0.83645 0.82889 0.83868 0.92057 0.90790 0.92002 0.93439 0.94606 0.92212 0.90691 0.91535 0.89265 0.90136 0.98780 0.94113 0.96004 0.95285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.00 71.98 0.65 -2.19 16 2 C -0.06 -1.52 2.98 -11.54 -0.03 -1.56 16 3 C -0.13 -2.54 9.01 71.98 0.65 -1.89 16 4 C -0.10 -2.52 4.79 -19.77 -0.09 -2.62 16 5 C -0.11 -2.26 8.71 22.25 0.19 -2.06 16 6 C -0.12 -2.10 10.04 22.28 0.22 -1.88 16 7 C -0.11 -2.40 8.72 22.25 0.19 -2.20 16 8 C -0.09 -2.56 4.79 -19.77 -0.09 -2.66 16 9 C -0.07 -1.83 2.98 -11.54 -0.03 -1.86 16 10 C -0.13 -2.92 8.97 71.98 0.65 -2.28 16 11 C -0.14 -3.47 9.04 71.98 0.65 -2.81 16 12 C 0.06 1.98 5.50 22.51 0.12 2.10 16 13 O -0.33 -11.88 7.64 -92.37 -0.71 -12.58 16 14 C 0.11 4.11 2.98 31.79 0.09 4.21 16 15 H 0.07 2.52 7.85 -2.39 -0.02 2.50 16 16 C -0.13 -5.13 6.34 31.99 0.20 -4.92 16 17 C 0.16 8.06 5.88 86.86 0.51 8.58 16 18 N -0.62 -33.66 3.39 -691.96 -2.35 -36.01 16 19 C -0.24 -14.01 10.27 84.03 0.86 -13.15 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 22 N -0.95 -57.01 10.09 21.65 0.22 -56.79 16 23 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.13 5.77 6.34 86.73 0.55 6.32 16 28 H 0.07 1.20 7.37 -2.39 -0.02 1.18 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.84 5.81 -2.39 -0.01 1.83 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.09 7.41 -2.39 -0.02 1.07 16 35 H 0.15 2.12 7.10 -2.91 -0.02 2.10 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.14 2.30 7.10 -2.91 -0.02 2.28 16 38 H 0.06 2.10 4.69 -2.39 -0.01 2.09 16 39 H 0.07 1.29 7.23 -2.39 -0.02 1.27 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.03 1.05 7.18 -2.39 -0.02 1.03 16 43 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.07 1.52 7.57 -2.39 -0.02 1.50 16 45 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 46 H 0.09 3.10 7.87 -2.39 -0.02 3.08 16 47 H 0.08 4.63 5.88 -2.38 -0.01 4.62 16 48 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 50 H 0.02 0.99 7.18 -2.39 -0.02 0.98 16 51 H 0.03 1.36 6.51 -2.39 -0.02 1.34 16 Total: -1.00 -66.78 388.07 5.84 -60.94 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.89 Total: 20.21 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 5.76 Total: -24.02 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.13 Total: -92.80 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.71 Total: -12.58 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -66.78 5.84 -60.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227325651.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.372 kcal (2) G-P(sol) polarization free energy of solvation -66.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds