Wall clock time and date at job start Tue Mar 31 2020 11:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38294 * 119.94530 * 2 1 4 4 C 1.38126 * 120.05523 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.02507 * 179.97438 * 4 3 2 6 6 C 1.38754 * 119.94502 * 359.97346 * 4 3 2 7 7 O 1.35900 * 120.05582 * 180.02562 * 6 4 3 8 8 C 1.42892 * 116.99754 * 278.03627 * 7 6 4 9 9 C 1.53518 * 114.17170 * 207.14977 * 8 7 6 10 10 N 1.47475 * 87.93445 * 220.32851 * 9 8 7 11 11 C 1.46899 * 111.00018 * 138.70205 * 10 9 8 12 12 C 1.50700 * 109.47281 * 169.99816 * 11 10 9 13 13 H 1.07996 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00003 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99807 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99969 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47250 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.46994 * 300.00171 * 16 14 12 19 19 H 1.48502 * 109.46840 * 60.00224 * 16 14 12 20 20 C 1.47484 * 87.83621 * 27.01094 * 10 9 8 21 21 C 1.38709 * 119.88653 * 0.27617 * 6 4 3 22 22 C 1.50700 * 120.02684 * 179.72696 * 21 6 4 23 23 C 1.53001 * 109.47315 * 173.82183 * 22 21 6 24 24 C 1.53005 * 109.46952 * 293.81633 * 22 21 6 25 25 C 1.53001 * 109.47416 * 53.81558 * 22 21 6 26 26 C 1.38165 * 119.94425 * 359.49599 * 21 6 4 27 27 H 1.08999 * 109.47331 * 89.99930 * 1 2 3 28 28 H 1.08997 * 109.47085 * 210.00382 * 1 2 3 29 29 H 1.09001 * 109.47173 * 330.00023 * 1 2 3 30 30 H 1.07997 * 119.97049 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.46842 * 270.01868 * 5 4 3 32 32 H 1.09003 * 109.47612 * 30.01621 * 5 4 3 33 33 H 1.08998 * 109.47028 * 150.01724 * 5 4 3 34 34 H 1.09002 * 113.25978 * 340.10428 * 8 7 6 35 35 H 1.09001 * 113.47227 * 105.55767 * 9 8 7 36 36 H 1.09000 * 113.52543 * 335.10843 * 9 8 7 37 37 H 1.08998 * 109.47106 * 49.99777 * 11 10 9 38 38 H 1.09000 * 109.47376 * 290.00361 * 11 10 9 39 39 H 0.97001 * 119.99771 * 179.97438 * 15 14 12 40 40 H 1.08997 * 113.47365 * 87.75585 * 20 10 9 41 41 H 1.09005 * 113.47241 * 218.22231 * 20 10 9 42 42 H 1.08996 * 109.47252 * 59.99755 * 23 22 21 43 43 H 1.08999 * 109.47051 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46743 * 299.99631 * 23 22 21 45 45 H 1.08998 * 109.47083 * 59.99903 * 24 22 21 46 46 H 1.09000 * 109.47227 * 180.02562 * 24 22 21 47 47 H 1.08996 * 109.47392 * 300.00108 * 24 22 21 48 48 H 1.09004 * 109.46492 * 52.95838 * 25 22 21 49 49 H 1.09001 * 109.47192 * 172.95985 * 25 22 21 50 50 H 1.08996 * 109.47205 * 292.96383 * 25 22 21 51 51 H 1.08009 * 119.96824 * 180.22964 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.3301 2.5071 -0.0011 6 6 4.2734 0.0000 -0.0005 7 8 5.6324 0.0000 -0.0005 8 6 6.2811 0.1779 -1.2612 9 6 7.6769 -0.4557 -1.3450 10 7 8.1170 0.7405 -2.0868 11 6 9.4506 1.1716 -1.6471 12 6 9.9695 2.2327 -2.5830 13 1 9.3684 2.5550 -3.4203 14 6 11.2112 2.7929 -2.3695 15 7 11.9428 2.4008 -1.3495 16 14 11.8540 4.1088 -3.5291 17 1 13.2023 4.5445 -3.0847 18 1 11.9413 3.5565 -4.9048 19 1 10.9297 5.2710 -3.5199 20 6 7.0603 1.4946 -1.3869 21 6 3.5787 -1.2006 -0.0058 22 6 4.3302 -2.5068 -0.0120 23 6 3.3416 -3.6648 0.1383 24 6 5.0890 -2.6523 -1.3326 25 6 5.3232 -2.5295 1.1519 26 6 2.1970 -1.1978 -0.0004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6559 2.1328 -0.0004 31 1 4.5105 2.8220 -1.0290 32 1 3.7402 3.2660 0.5130 33 1 5.2830 2.3782 0.5121 34 1 5.6375 -0.0461 -2.1119 35 1 7.7040 -1.3694 -1.9388 36 1 8.1624 -0.5685 -0.3756 37 1 10.1288 0.3183 -1.6536 38 1 9.3869 1.5772 -0.6374 39 1 12.8165 2.7947 -1.1995 40 1 7.3806 1.9028 -0.4283 41 1 6.5650 2.2340 -2.0164 42 1 2.6343 -3.6486 -0.6908 43 1 3.8853 -4.6095 0.1343 44 1 2.8010 -3.5611 1.0792 45 1 5.7933 -1.8273 -1.4398 46 1 5.6323 -3.5972 -1.3374 47 1 4.3817 -2.6361 -2.1618 48 1 4.7997 -2.3013 2.0804 49 1 5.7763 -3.5182 1.2236 50 1 6.1006 -1.7850 0.9807 51 1 1.6557 -2.1325 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228178637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:05 Heat of formation + Delta-G solvation = 9.008181 kcal Electronic energy + Delta-G solvation = -27883.237314 eV Core-core repulsion = 24362.541313 eV Total energy + Delta-G solvation = -3520.696002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86043 -39.22570 -36.82302 -36.64213 -33.01801 -32.73965 -30.85737 -29.26802 -28.01195 -27.22003 -27.11140 -26.02085 -25.36606 -24.81654 -22.85222 -21.78161 -20.53647 -19.49495 -18.89736 -17.89229 -16.44407 -16.26666 -15.66236 -15.30604 -14.89628 -14.52124 -14.30749 -14.08500 -13.92926 -13.77544 -13.67309 -13.39345 -13.23560 -12.74315 -12.60860 -12.44402 -12.38302 -12.24426 -12.07443 -12.00005 -11.89369 -11.69045 -11.54592 -11.44266 -11.35125 -11.10026 -10.87923 -10.83415 -10.70738 -10.55732 -10.38801 -10.20600 -9.79596 -9.28115 -9.22405 -8.62968 -8.44662 -8.29048 -7.93830 -6.04232 -4.05711 1.18190 1.32388 3.33325 3.36967 3.38241 3.40964 3.98991 4.42380 4.49198 4.64883 4.72421 4.80095 4.89535 4.97810 5.01925 5.08996 5.22732 5.25681 5.28215 5.31171 5.40291 5.44110 5.50254 5.53269 5.61091 5.66025 5.71143 5.75930 5.78731 5.85143 5.90516 5.97658 6.00072 6.01867 6.03922 6.10469 6.13060 6.24035 6.29448 6.33613 6.34706 6.42091 6.50700 6.53329 6.57265 6.67431 6.83989 7.16938 7.62446 7.78924 7.83141 8.07799 8.42666 9.01161 9.58264 11.06809 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.003231 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.726344 B = 8662.832145 C = 9662.946348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.096 4.096 5 C -0.116 4.116 6 C 0.099 3.901 7 O -0.315 6.315 8 C 0.059 3.941 9 C -0.001 4.001 10 N -0.462 5.462 11 C 0.162 3.838 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.288 1.288 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.004 4.004 21 C -0.078 4.078 22 C -0.020 4.020 23 C -0.143 4.143 24 C -0.156 4.156 25 C -0.142 4.142 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.005 0.995 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.080 0.920 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 -8.498 4.590 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.097 4.097 5 C -0.172 4.172 6 C 0.056 3.944 7 O -0.231 6.231 8 C 0.003 3.997 9 C -0.131 4.131 10 N -0.186 5.186 11 C 0.037 3.963 12 C -0.545 4.545 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.728 3.272 17 H -0.213 1.213 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.133 4.133 21 C -0.078 4.078 22 C -0.020 4.020 23 C -0.200 4.200 24 C -0.213 4.213 25 C -0.199 4.199 26 C -0.137 4.137 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.099 0.901 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.812 -8.481 4.101 23.760 hybrid contribution 0.439 0.829 0.197 0.958 sum -21.373 -7.653 4.298 23.105 Atomic orbital electron populations 1.20746 0.91338 1.02526 1.02135 1.19857 0.95893 0.93063 1.00510 1.20774 0.92938 0.97557 1.02233 1.20277 0.93923 0.95418 1.00043 1.20794 1.00624 0.93112 1.02719 1.18350 0.83511 0.91160 1.01425 1.86114 1.14724 1.91825 1.30463 1.24276 0.92535 0.98138 0.84758 1.24153 0.92550 0.97588 0.98760 1.69006 1.04978 1.01777 1.42876 1.20256 0.84563 0.96411 0.95118 1.21046 1.01591 1.20121 1.11705 0.91908 1.25001 0.96773 0.97257 0.95637 1.69945 1.11759 1.43258 1.28933 0.86531 0.77815 0.81791 0.81112 1.21329 1.20140 1.20238 1.24329 0.94217 0.96175 0.98615 1.20103 0.93457 0.94251 1.00001 1.19361 0.94857 0.90977 0.96815 1.21981 0.98938 0.97628 1.01450 1.22201 1.00533 1.03150 0.95437 1.21975 0.99268 1.02213 0.96469 1.20884 0.92967 0.97668 1.02199 0.91359 0.91744 0.91697 0.86082 0.90954 0.91761 0.90459 0.88710 0.90072 0.91045 0.95213 0.97668 0.92821 0.90900 0.90530 0.92555 0.92399 0.92563 0.90393 0.92334 0.93063 0.93236 0.92973 0.90090 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.98 5.88 -104.60 -0.62 -1.59 16 3 C -0.12 -1.32 9.35 -39.60 -0.37 -1.69 16 4 C -0.10 -1.25 5.89 -104.47 -0.62 -1.86 16 5 C -0.12 -1.43 8.79 36.00 0.32 -1.11 16 6 C 0.10 1.38 5.24 -39.22 -0.21 1.17 16 7 O -0.32 -4.77 6.09 -19.43 -0.12 -4.89 16 8 C 0.06 0.93 2.50 -26.20 -0.07 0.86 16 9 C 0.00 -0.03 6.75 -7.55 -0.05 -0.08 16 10 N -0.46 -10.01 6.32 -246.11 -1.55 -11.56 16 11 C 0.16 4.25 4.57 -4.98 -0.02 4.23 16 12 C -0.51 -14.46 9.39 -34.44 -0.32 -14.78 16 13 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.00 -0.08 6.26 -7.54 -0.05 -0.12 16 21 C -0.08 -0.96 4.76 -104.47 -0.50 -1.46 16 22 C -0.02 -0.23 0.75 -155.66 -0.12 -0.34 16 23 C -0.14 -1.30 7.15 37.16 0.27 -1.04 16 24 C -0.16 -1.82 8.31 37.16 0.31 -1.51 16 25 C -0.14 -1.70 8.05 37.16 0.30 -1.40 16 26 C -0.12 -1.31 8.64 -39.61 -0.34 -1.65 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.07 0.89 7.96 -51.93 -0.41 0.47 16 32 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.08 1.06 6.88 -51.93 -0.36 0.71 16 34 H 0.10 1.46 7.46 -51.93 -0.39 1.07 16 35 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 36 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 37 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 1.44 7.28 -51.93 -0.38 1.06 16 41 H 0.08 1.38 7.97 -51.93 -0.41 0.96 16 42 H 0.06 0.47 7.24 -51.93 -0.38 0.10 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 45 H 0.08 1.02 2.48 -51.93 -0.13 0.89 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.59 8.13 -51.93 -0.42 0.16 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.08 1.12 5.94 -51.93 -0.31 0.81 16 51 H 0.13 1.15 5.91 -52.48 -0.31 0.84 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -30.24 389.34 -10.75 -40.99 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.84 Total: 0.29 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.82 Total: -21.37 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.82 Total: -37.70 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.12 Total: -4.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.24 -10.75 -40.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228178637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.997 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds