Wall clock time and date at job start Tue Mar 31 2020 11:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38288 * 119.94498 * 2 1 4 4 C 1.38124 * 120.05534 * 179.70566 * 3 2 1 5 5 C 1.50701 * 120.03054 * 180.32484 * 4 3 2 6 6 C 1.38759 * 119.94479 * 0.59534 * 4 3 2 7 7 O 1.35898 * 120.05782 * 179.69833 * 6 4 3 8 8 C 1.42895 * 117.00049 * 276.09036 * 7 6 4 9 9 H 1.09000 * 110.78170 * 330.05150 * 8 7 6 10 10 C 1.55159 * 110.71799 * 206.81594 * 8 7 6 11 11 C 1.55128 * 101.48811 * 205.97041 * 10 8 7 12 12 N 1.47422 * 104.72294 * 37.29259 * 11 10 8 13 13 C 1.36934 * 125.64774 * 155.81902 * 12 11 10 14 14 H 1.08008 * 119.99921 * 186.60516 * 13 12 11 15 15 C 1.38810 * 120.00392 * 6.59869 * 13 12 11 16 16 N 1.31611 * 120.00407 * 209.76703 * 15 13 12 17 17 Si 1.86804 * 119.99314 * 30.04238 * 15 13 12 18 18 H 1.48501 * 109.47182 * 269.72276 * 17 15 13 19 19 H 1.48503 * 109.47171 * 29.72758 * 17 15 13 20 20 H 1.48499 * 109.46806 * 149.72294 * 17 15 13 21 21 C 1.47026 * 108.70247 * 335.55904 * 12 11 10 22 22 C 1.38711 * 119.88568 * 359.42928 * 6 4 3 23 23 C 1.50695 * 120.03005 * 180.25092 * 22 6 4 24 24 C 1.52992 * 109.47371 * 173.42303 * 23 22 6 25 25 C 1.53002 * 109.47131 * 293.42333 * 23 22 6 26 26 C 1.53003 * 109.46776 * 53.41989 * 23 22 6 27 27 C 1.38169 * 119.94367 * 0.27374 * 22 6 4 28 28 H 1.09002 * 109.46915 * 269.97259 * 1 2 3 29 29 H 1.08999 * 109.47450 * 29.96860 * 1 2 3 30 30 H 1.08998 * 109.47621 * 149.97761 * 1 2 3 31 31 H 1.07996 * 119.97442 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.47084 * 270.27456 * 5 4 3 33 33 H 1.08999 * 109.47036 * 30.27305 * 5 4 3 34 34 H 1.08996 * 109.47262 * 150.27225 * 5 4 3 35 35 H 1.09007 * 111.00371 * 324.21263 * 10 8 7 36 36 H 1.09002 * 111.00415 * 88.02190 * 10 8 7 37 37 H 1.09004 * 110.49445 * 278.45290 * 11 10 8 38 38 H 1.08996 * 110.34721 * 156.06037 * 11 10 8 39 39 H 0.96996 * 120.00338 * 355.26038 * 16 15 13 40 40 H 1.08996 * 109.88348 * 120.70047 * 21 12 11 41 41 H 1.09003 * 109.87741 * 241.71005 * 21 12 11 42 42 H 1.09001 * 109.47424 * 60.00110 * 24 23 22 43 43 H 1.09004 * 109.47286 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.47432 * 299.99832 * 24 23 22 45 45 H 1.09003 * 109.47328 * 72.59118 * 25 23 22 46 46 H 1.08999 * 109.47272 * 192.59262 * 25 23 22 47 47 H 1.08996 * 109.47201 * 312.59784 * 25 23 22 48 48 H 1.08995 * 109.47021 * 60.00784 * 26 23 22 49 49 H 1.09004 * 109.46886 * 180.02562 * 26 23 22 50 50 H 1.08995 * 109.47638 * 299.99796 * 26 23 22 51 51 H 1.08005 * 119.97174 * 180.02562 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2009 0.0061 5 6 4.3301 2.5071 0.0135 6 6 4.2734 0.0000 -0.0002 7 8 5.6324 -0.0001 -0.0003 8 6 6.2810 0.1416 -1.2657 9 1 5.6697 -0.2811 -2.0631 10 6 7.6842 -0.5201 -1.2404 11 6 8.4270 0.2887 -2.3362 12 7 7.9280 1.6679 -2.1869 13 6 8.5870 2.8019 -2.5802 14 1 8.1858 3.7734 -2.3314 15 6 9.7706 2.7031 -3.2985 16 7 10.6879 3.6404 -3.1878 17 14 10.0582 1.2436 -4.4283 18 1 10.7246 0.1544 -3.6701 19 1 8.7558 0.7579 -4.9510 20 1 10.9230 1.6582 -5.5621 21 6 6.6028 1.6236 -1.5515 22 6 3.5787 -1.2006 -0.0007 23 6 4.3302 -2.5068 -0.0018 24 6 3.3426 -3.6636 0.1630 25 6 5.0810 -2.6621 -1.3259 26 6 5.3301 -2.5208 1.1562 27 6 2.1970 -1.1979 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6559 2.1328 0.0004 32 1 4.5116 2.8276 -1.0123 33 1 3.7398 3.2631 0.5313 34 1 5.2825 2.3753 0.5269 35 1 8.1586 -0.3931 -0.2672 36 1 7.6237 -1.5749 -1.5085 37 1 8.1841 -0.0975 -3.3261 38 1 9.5034 0.2545 -2.1683 39 1 10.5095 4.4336 -2.6587 40 1 6.6204 2.1858 -0.6179 41 1 5.8552 2.0447 -2.2237 42 1 2.6302 -3.6536 -0.6619 43 1 3.8862 -4.6084 0.1627 44 1 2.8077 -3.5531 1.1063 45 1 5.9302 -1.9788 -1.3444 46 1 5.4376 -3.6875 -1.4233 47 1 4.4104 -2.4304 -2.1532 48 1 4.7952 -2.4103 2.0994 49 1 5.8740 -3.4655 1.1551 50 1 6.0338 -1.6968 1.0387 51 1 1.6556 -2.1324 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228178923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:13 Heat of formation + Delta-G solvation = 4.205186 kcal Electronic energy + Delta-G solvation = -28620.391655 eV Core-core repulsion = 25099.487380 eV Total energy + Delta-G solvation = -3520.904275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.77747 -38.31075 -36.77657 -36.28582 -32.99090 -32.40242 -30.83487 -29.60597 -28.52120 -27.56878 -27.15492 -27.05767 -25.61536 -23.77845 -22.82023 -21.16228 -20.86522 -19.81922 -18.84651 -17.88435 -17.45781 -16.24755 -15.63173 -15.26174 -15.16009 -14.42120 -14.15592 -13.96290 -13.83183 -13.68388 -13.57789 -13.41805 -13.15559 -12.97266 -12.76284 -12.59075 -12.36518 -12.31888 -12.26767 -11.97024 -11.87753 -11.65124 -11.46822 -11.33870 -11.27548 -11.11416 -10.90272 -10.82976 -10.65511 -10.58707 -10.37304 -9.91886 -9.67771 -9.38638 -9.28740 -8.59326 -8.39588 -8.24516 -7.08648 -6.35027 -3.14614 1.21336 1.35732 3.40627 3.40988 3.52600 3.67299 4.02786 4.49650 4.59716 4.66338 4.77872 4.93413 4.98074 4.99965 5.08148 5.12484 5.23310 5.28764 5.30870 5.41668 5.42732 5.45058 5.50932 5.53243 5.55882 5.62995 5.67277 5.74396 5.76329 5.80665 5.84293 5.92153 5.96123 5.97598 6.02368 6.08457 6.12210 6.15991 6.30354 6.37135 6.42446 6.48298 6.50095 6.54834 6.55906 6.61229 6.70884 6.75821 6.91729 7.69725 7.83015 8.34199 9.04075 9.60875 10.26580 11.14671 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.004165 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.385043 B = 6721.482631 C = 7731.816299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.093 4.093 5 C -0.122 4.122 6 C 0.099 3.901 7 O -0.317 6.317 8 C 0.079 3.921 9 H 0.071 0.929 10 C -0.127 4.127 11 C 0.107 3.893 12 N -0.605 5.605 13 C -0.332 4.332 14 H 0.077 0.923 15 C -0.018 4.018 16 N -0.915 5.915 17 Si 1.058 2.942 18 H -0.293 1.293 19 H -0.289 1.289 20 H -0.298 1.298 21 C 0.114 3.886 22 C -0.078 4.078 23 C -0.020 4.020 24 C -0.142 4.142 25 C -0.160 4.160 26 C -0.145 4.145 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.263 0.737 40 H 0.048 0.952 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.084 0.916 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.918 -12.937 7.604 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.093 4.093 5 C -0.178 4.178 6 C 0.055 3.945 7 O -0.233 6.233 8 C 0.024 3.976 9 H 0.089 0.911 10 C -0.165 4.165 11 C -0.018 4.018 12 N -0.333 5.333 13 C -0.459 4.459 14 H 0.095 0.905 15 C -0.219 4.219 16 N -0.555 5.555 17 Si 0.890 3.110 18 H -0.220 1.220 19 H -0.216 1.216 20 H -0.225 1.225 21 C -0.012 4.012 22 C -0.079 4.079 23 C -0.020 4.020 24 C -0.200 4.200 25 C -0.217 4.217 26 C -0.202 4.202 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.646 -13.542 6.725 23.238 hybrid contribution -1.445 0.805 0.731 1.809 sum -19.091 -12.737 7.455 24.131 Atomic orbital electron populations 1.20744 0.91343 1.02561 1.02075 1.19851 0.95879 0.93050 1.00494 1.20780 0.92935 0.97574 1.02225 1.20295 0.93916 0.95492 0.99630 1.21039 1.00614 0.93051 1.03117 1.18341 0.83486 0.91160 1.01500 1.86042 1.14658 1.92559 1.30068 1.23526 0.93238 0.97006 0.83836 0.91075 1.23029 0.93796 0.98442 1.01226 1.22007 0.98710 0.85752 0.95359 1.44754 1.15545 1.01600 1.71425 1.19981 1.06599 0.84746 1.34539 0.90535 1.25740 0.91485 1.04653 1.00052 1.70909 1.29697 1.10965 1.43944 0.83931 0.75000 0.75006 0.77108 1.22049 1.21580 1.22532 1.22079 0.88376 0.93686 0.97076 1.20088 0.93466 0.94167 1.00167 1.19349 0.94877 0.91045 0.96700 1.21982 0.98963 0.97547 1.01470 1.22304 1.01247 1.02520 0.95615 1.22032 0.98998 1.02786 0.96419 1.20873 0.92952 0.97648 1.02391 0.91386 0.91674 0.91759 0.86068 0.90504 0.91946 0.90074 0.89884 0.90729 0.95288 0.91550 0.92625 0.93469 0.95619 0.92548 0.92439 0.92543 0.90214 0.92408 0.92985 0.93285 0.92994 0.89732 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.09 -1.03 5.88 -104.60 -0.62 -1.65 16 3 C -0.12 -1.43 9.35 -39.60 -0.37 -1.80 16 4 C -0.09 -1.31 5.89 -104.47 -0.62 -1.93 16 5 C -0.12 -1.72 8.08 36.01 0.29 -1.43 16 6 C 0.10 1.46 5.23 -39.21 -0.21 1.25 16 7 O -0.32 -5.05 5.75 -19.42 -0.11 -5.16 16 8 C 0.08 1.36 1.98 -24.90 -0.05 1.31 16 9 H 0.07 1.19 6.76 -51.93 -0.35 0.84 16 10 C -0.13 -2.18 6.33 -24.46 -0.15 -2.34 16 11 C 0.11 2.33 4.73 -2.41 -0.01 2.32 16 12 N -0.60 -15.00 3.31 -169.94 -0.56 -15.56 16 13 C -0.33 -9.55 10.40 -15.06 -0.16 -9.71 16 14 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 15 C -0.02 -0.54 5.38 -17.43 -0.09 -0.64 16 16 N -0.91 -28.62 13.70 55.49 0.76 -27.86 16 17 Si 1.06 26.53 24.75 -169.99 -4.21 22.33 16 18 H -0.29 -6.88 6.50 56.52 0.37 -6.51 16 19 H -0.29 -6.92 6.42 56.52 0.36 -6.55 16 20 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 21 C 0.11 2.35 5.18 -3.06 -0.02 2.33 16 22 C -0.08 -1.02 4.72 -104.48 -0.49 -1.51 16 23 C -0.02 -0.23 0.75 -155.66 -0.12 -0.34 16 24 C -0.14 -1.32 7.12 37.15 0.26 -1.05 16 25 C -0.16 -1.89 7.66 37.16 0.28 -1.61 16 26 C -0.15 -1.72 8.15 37.16 0.30 -1.42 16 27 C -0.12 -1.39 8.65 -39.60 -0.34 -1.73 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.08 1.15 6.41 -51.93 -0.33 0.82 16 33 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.08 1.26 5.84 -51.93 -0.30 0.96 16 35 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 36 H 0.07 1.07 6.63 -51.93 -0.34 0.73 16 37 H 0.03 0.64 6.00 -51.93 -0.31 0.32 16 38 H 0.07 1.54 5.88 -51.93 -0.31 1.23 16 39 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 40 H 0.05 0.99 5.72 -51.93 -0.30 0.70 16 41 H 0.03 0.54 7.11 -51.93 -0.37 0.17 16 42 H 0.06 0.49 7.21 -51.93 -0.37 0.11 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 45 H 0.08 1.04 2.45 -51.93 -0.13 0.92 16 46 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 47 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 1.16 5.63 -51.93 -0.29 0.87 16 51 H 0.13 1.20 5.91 -52.48 -0.31 0.89 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -31.31 368.36 -8.72 -40.02 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.41 Total: 1.15 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -1.74 Total: -20.47 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.20 Total: -43.42 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.11 Total: -5.16 kcal Atomic # 14 Polarization: 26.53 SS G_CDS: -4.21 Total: 22.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.31 -8.72 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228178923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.229 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds