Wall clock time and date at job start Tue Mar 31 2020 11:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38288 * 119.94498 * 2 1 4 4 C 1.38124 * 120.05534 * 179.70566 * 3 2 1 5 5 C 1.50701 * 120.03054 * 180.32484 * 4 3 2 6 6 C 1.38759 * 119.94479 * 0.59534 * 4 3 2 7 7 O 1.35898 * 120.05782 * 179.69833 * 6 4 3 8 8 C 1.42895 * 117.00049 * 276.09036 * 7 6 4 9 9 H 1.09000 * 110.78170 * 330.05150 * 8 7 6 10 10 C 1.55159 * 110.71799 * 206.81594 * 8 7 6 11 11 C 1.55128 * 101.48811 * 205.97041 * 10 8 7 12 12 N 1.47422 * 104.72294 * 37.29259 * 11 10 8 13 13 C 1.36934 * 125.64774 * 155.81902 * 12 11 10 14 14 H 1.08008 * 119.99921 * 186.60516 * 13 12 11 15 15 C 1.38810 * 120.00392 * 6.59869 * 13 12 11 16 16 N 1.31611 * 120.00407 * 209.76703 * 15 13 12 17 17 Si 1.86804 * 119.99314 * 30.04238 * 15 13 12 18 18 H 1.48501 * 109.47182 * 269.72276 * 17 15 13 19 19 H 1.48503 * 109.47171 * 29.72758 * 17 15 13 20 20 H 1.48499 * 109.46806 * 149.72294 * 17 15 13 21 21 C 1.47026 * 108.70247 * 335.55904 * 12 11 10 22 22 C 1.38711 * 119.88568 * 359.42928 * 6 4 3 23 23 C 1.50695 * 120.03005 * 180.25092 * 22 6 4 24 24 C 1.52992 * 109.47371 * 173.42303 * 23 22 6 25 25 C 1.53002 * 109.47131 * 293.42333 * 23 22 6 26 26 C 1.53003 * 109.46776 * 53.41989 * 23 22 6 27 27 C 1.38169 * 119.94367 * 0.27374 * 22 6 4 28 28 H 1.09002 * 109.46915 * 269.97259 * 1 2 3 29 29 H 1.08999 * 109.47450 * 29.96860 * 1 2 3 30 30 H 1.08998 * 109.47621 * 149.97761 * 1 2 3 31 31 H 1.07996 * 119.97442 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.47084 * 270.27456 * 5 4 3 33 33 H 1.08999 * 109.47036 * 30.27305 * 5 4 3 34 34 H 1.08996 * 109.47262 * 150.27225 * 5 4 3 35 35 H 1.09007 * 111.00371 * 324.21263 * 10 8 7 36 36 H 1.09002 * 111.00415 * 88.02190 * 10 8 7 37 37 H 1.09004 * 110.49445 * 278.45290 * 11 10 8 38 38 H 1.08996 * 110.34721 * 156.06037 * 11 10 8 39 39 H 0.96996 * 120.00338 * 355.26038 * 16 15 13 40 40 H 1.08996 * 109.88348 * 120.70047 * 21 12 11 41 41 H 1.09003 * 109.87741 * 241.71005 * 21 12 11 42 42 H 1.09001 * 109.47424 * 60.00110 * 24 23 22 43 43 H 1.09004 * 109.47286 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.47432 * 299.99832 * 24 23 22 45 45 H 1.09003 * 109.47328 * 72.59118 * 25 23 22 46 46 H 1.08999 * 109.47272 * 192.59262 * 25 23 22 47 47 H 1.08996 * 109.47201 * 312.59784 * 25 23 22 48 48 H 1.08995 * 109.47021 * 60.00784 * 26 23 22 49 49 H 1.09004 * 109.46886 * 180.02562 * 26 23 22 50 50 H 1.08995 * 109.47638 * 299.99796 * 26 23 22 51 51 H 1.08005 * 119.97174 * 180.02562 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2009 0.0061 5 6 4.3301 2.5071 0.0135 6 6 4.2734 0.0000 -0.0002 7 8 5.6324 -0.0001 -0.0003 8 6 6.2810 0.1416 -1.2657 9 1 5.6697 -0.2811 -2.0631 10 6 7.6842 -0.5201 -1.2404 11 6 8.4270 0.2887 -2.3362 12 7 7.9280 1.6679 -2.1869 13 6 8.5870 2.8019 -2.5802 14 1 8.1858 3.7734 -2.3314 15 6 9.7706 2.7031 -3.2985 16 7 10.6879 3.6404 -3.1878 17 14 10.0582 1.2436 -4.4283 18 1 10.7246 0.1544 -3.6701 19 1 8.7558 0.7579 -4.9510 20 1 10.9230 1.6582 -5.5621 21 6 6.6028 1.6236 -1.5515 22 6 3.5787 -1.2006 -0.0007 23 6 4.3302 -2.5068 -0.0018 24 6 3.3426 -3.6636 0.1630 25 6 5.0810 -2.6621 -1.3259 26 6 5.3301 -2.5208 1.1562 27 6 2.1970 -1.1979 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6559 2.1328 0.0004 32 1 4.5116 2.8276 -1.0123 33 1 3.7398 3.2631 0.5313 34 1 5.2825 2.3753 0.5269 35 1 8.1586 -0.3931 -0.2672 36 1 7.6237 -1.5749 -1.5085 37 1 8.1841 -0.0975 -3.3261 38 1 9.5034 0.2545 -2.1683 39 1 10.5095 4.4336 -2.6587 40 1 6.6204 2.1858 -0.6179 41 1 5.8552 2.0447 -2.2237 42 1 2.6302 -3.6536 -0.6619 43 1 3.8862 -4.6084 0.1627 44 1 2.8077 -3.5531 1.1063 45 1 5.9302 -1.9788 -1.3444 46 1 5.4376 -3.6875 -1.4233 47 1 4.4104 -2.4304 -2.1532 48 1 4.7952 -2.4103 2.0994 49 1 5.8740 -3.4655 1.1551 50 1 6.0338 -1.6968 1.0387 51 1 1.6556 -2.1324 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228178923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:11 Heat of formation + Delta-G solvation = -12.584859 kcal Electronic energy + Delta-G solvation = -28621.119726 eV Core-core repulsion = 25099.487380 eV Total energy + Delta-G solvation = -3521.632346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.83472 -39.66181 -37.79602 -37.60008 -34.63119 -33.84090 -31.95804 -31.21584 -29.92214 -28.57763 -28.09749 -27.96550 -26.70489 -25.57204 -23.75671 -22.79222 -22.27661 -21.11046 -19.75667 -19.58299 -19.03725 -17.37250 -17.20192 -16.55098 -16.09960 -15.81247 -15.49198 -15.35279 -15.10111 -14.90978 -14.70399 -14.51682 -14.39478 -14.20612 -13.97062 -13.93650 -13.44757 -13.40025 -13.14695 -13.08928 -13.04320 -12.92107 -12.64052 -12.58202 -12.37898 -12.33990 -12.25164 -11.99724 -11.84430 -11.69393 -11.59664 -11.44799 -11.38467 -11.28545 -10.64866 -10.52824 -9.55502 -9.23306 -9.18396 -8.69211 -5.41526 0.21983 0.39812 1.39486 1.53025 1.69775 2.34104 2.51086 2.91231 3.00171 3.40702 3.61147 3.64228 3.76112 3.80429 3.90432 4.00964 4.15224 4.16922 4.25216 4.29556 4.35383 4.41655 4.49739 4.58227 4.61132 4.67888 4.71204 4.72634 4.78648 4.80490 4.85985 4.87401 4.88351 4.94162 4.96826 5.03960 5.06478 5.14067 5.15655 5.19135 5.21693 5.29301 5.34038 5.41297 5.51706 5.53896 5.57002 5.67645 5.76063 5.92725 6.07585 6.65084 6.80091 7.45725 8.10503 8.81217 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.004165 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.385043 B = 6721.482631 C = 7731.816299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.067 3.933 7 O -0.317 6.317 8 C 0.098 3.902 9 H 0.081 0.919 10 C -0.113 4.113 11 C 0.098 3.902 12 N -0.626 5.626 13 C -0.327 4.327 14 H 0.041 0.959 15 C -0.072 4.072 16 N -0.948 5.948 17 Si 1.100 2.900 18 H -0.265 1.265 19 H -0.270 1.270 20 H -0.302 1.302 21 C 0.113 3.887 22 C -0.081 4.081 23 C -0.021 4.021 24 C -0.139 4.139 25 C -0.160 4.160 26 C -0.143 4.143 27 C -0.123 4.123 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.567 -16.635 7.686 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.112 4.112 5 C -0.172 4.172 6 C 0.024 3.976 7 O -0.233 6.233 8 C 0.042 3.958 9 H 0.098 0.902 10 C -0.150 4.150 11 C -0.027 4.027 12 N -0.355 5.355 13 C -0.455 4.455 14 H 0.059 0.941 15 C -0.267 4.267 16 N -0.591 5.591 17 Si 0.925 3.075 18 H -0.191 1.191 19 H -0.195 1.195 20 H -0.231 1.231 21 C -0.012 4.012 22 C -0.081 4.081 23 C -0.021 4.021 24 C -0.196 4.196 25 C -0.217 4.217 26 C -0.200 4.200 27 C -0.140 4.140 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.336 -17.262 6.844 27.538 hybrid contribution -0.786 2.048 0.815 2.340 sum -21.122 -15.214 7.659 27.134 Atomic orbital electron populations 1.20817 0.88842 1.03728 1.03223 1.20265 0.97701 0.92433 0.98390 1.21020 0.92209 0.99024 1.02076 1.20405 0.94965 0.95039 1.00802 1.20911 1.00012 0.94262 1.01977 1.18608 0.82859 0.92245 1.03886 1.86068 1.15845 1.92393 1.29006 1.23217 0.93695 0.93837 0.85044 0.90154 1.22953 0.92799 0.99803 0.99485 1.22190 0.98438 0.84578 0.97471 1.44818 1.17285 1.01936 1.71458 1.19862 1.06805 0.85186 1.33688 0.94060 1.27050 0.91499 1.06977 1.01153 1.71032 1.31058 1.11547 1.45449 0.83392 0.75967 0.72948 0.75152 1.19082 1.19520 1.23057 1.22176 0.86414 0.96771 0.95873 1.20321 0.94241 0.94115 0.99431 1.19411 0.95194 0.91189 0.96322 1.21951 0.98669 0.96885 1.02068 1.22285 1.00638 1.03138 0.95609 1.21985 0.98785 1.02599 0.96588 1.21216 0.92502 0.98859 1.01464 0.90098 0.90920 0.90274 0.84536 0.92116 0.90148 0.92307 0.90213 0.86872 0.94177 0.92981 0.94237 0.94593 0.96265 0.91702 0.91322 0.92049 0.91741 0.90681 0.93275 0.93507 0.91566 0.91913 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.23 0.71 -0.64 16 2 C -0.09 -1.71 5.88 -19.85 -0.12 -1.82 16 3 C -0.13 -2.86 9.35 22.25 0.21 -2.65 16 4 C -0.11 -3.12 5.89 -19.77 -0.12 -3.24 16 5 C -0.12 -3.37 8.08 71.24 0.58 -2.80 16 6 C 0.07 1.93 5.23 22.51 0.12 2.05 16 7 O -0.32 -10.00 5.75 -92.40 -0.53 -10.53 16 8 C 0.10 3.30 1.98 31.78 0.06 3.36 16 9 H 0.08 2.57 6.76 -2.39 -0.02 2.55 16 10 C -0.11 -3.69 6.33 32.06 0.20 -3.49 16 11 C 0.10 4.13 4.73 86.93 0.41 4.55 16 12 N -0.63 -31.65 3.31 -691.55 -2.29 -33.94 16 13 C -0.33 -19.63 10.40 84.03 0.87 -18.76 16 14 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 15 C -0.07 -4.37 5.38 84.86 0.46 -3.92 16 16 N -0.95 -61.61 13.70 21.65 0.30 -61.32 16 17 Si 1.10 53.54 24.75 68.60 1.70 55.23 16 18 H -0.26 -11.66 6.50 99.48 0.65 -11.01 16 19 H -0.27 -12.14 6.42 99.48 0.64 -11.50 16 20 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 21 C 0.11 4.80 5.18 86.73 0.45 5.25 16 22 C -0.08 -1.91 4.72 -19.77 -0.09 -2.00 16 23 C -0.02 -0.42 0.75 -52.93 -0.04 -0.46 16 24 C -0.14 -2.02 7.12 71.98 0.51 -1.51 16 25 C -0.16 -3.27 7.66 71.98 0.55 -2.72 16 26 C -0.14 -3.05 8.15 71.98 0.59 -2.47 16 27 C -0.12 -2.43 8.65 22.25 0.19 -2.24 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.06 1.93 6.41 -2.39 -0.02 1.91 16 33 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 34 H 0.06 1.95 5.84 -2.39 -0.01 1.94 16 35 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.11 2.87 6.63 -2.39 -0.02 2.85 16 37 H 0.04 1.64 6.00 -2.39 -0.01 1.63 16 38 H 0.05 2.35 5.88 -2.39 -0.01 2.34 16 39 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 40 H 0.04 1.60 5.72 -2.39 -0.01 1.59 16 41 H 0.02 0.84 7.11 -2.39 -0.02 0.83 16 42 H 0.06 0.84 7.21 -2.39 -0.02 0.82 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.06 0.84 7.82 -2.39 -0.02 0.82 16 45 H 0.06 1.50 2.45 -2.39 -0.01 1.49 16 46 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 47 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.06 1.63 5.63 -2.39 -0.01 1.62 16 51 H 0.15 2.21 5.91 -2.91 -0.02 2.19 16 Total: -1.00 -70.75 368.36 5.47 -65.28 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.75 Total: 18.80 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 5.55 Total: -33.52 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -1.99 Total: -95.26 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.53 Total: -10.53 kcal Atomic # 14 Polarization: 53.54 SS G_CDS: 1.70 Total: 55.23 kcal Total: -70.75 5.47 -65.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228178923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.694 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds