Wall clock time and date at job start Tue Mar 31 2020 12:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 C 1.53005 * 109.46657 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47046 * 180.02562 * 5 4 3 7 7 C 1.38166 * 120.02683 * 264.71727 * 6 5 4 8 8 C 1.38239 * 120.05314 * 179.78946 * 7 6 5 9 9 C 1.38293 * 120.11322 * 0.47056 * 8 7 6 10 10 C 1.50699 * 119.97268 * 179.76594 * 9 8 7 11 11 C 1.38122 * 120.05554 * 359.78879 * 9 8 7 12 12 C 1.38713 * 120.02872 * 85.00122 * 6 5 4 13 13 O 1.35906 * 120.05339 * 359.95087 * 12 6 5 14 14 C 1.42902 * 116.99694 * 180.02562 * 13 12 6 15 15 H 1.08997 * 110.63858 * 38.90115 * 14 13 12 16 16 C 1.55162 * 110.71554 * 162.23583 * 14 13 12 17 17 C 1.54913 * 101.57628 * 153.86832 * 16 14 13 18 18 N 1.47418 * 104.83261 * 322.98688 * 17 16 14 19 19 C 1.36935 * 125.65207 * 204.16619 * 18 17 16 20 20 H 1.08003 * 120.00586 * 158.17616 * 19 18 17 21 21 C 1.38817 * 119.99716 * 338.17772 * 19 18 17 22 22 N 1.31622 * 119.99798 * 157.27638 * 21 19 18 23 23 Si 1.86798 * 120.00116 * 337.27494 * 21 19 18 24 24 H 1.48503 * 109.46949 * 84.78583 * 23 21 19 25 25 H 1.48490 * 109.47381 * 204.78657 * 23 21 19 26 26 H 1.48505 * 109.47207 * 324.79247 * 23 21 19 27 27 C 1.47022 * 108.70529 * 24.13325 * 18 17 16 28 28 H 1.09005 * 109.46695 * 300.00031 * 1 2 3 29 29 H 1.09004 * 109.46773 * 59.99472 * 1 2 3 30 30 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46695 * 239.99969 * 2 1 3 32 32 H 1.08998 * 109.47080 * 120.00222 * 2 1 3 33 33 H 1.08997 * 109.46847 * 60.00722 * 3 2 1 34 34 H 1.08998 * 109.47302 * 300.00086 * 3 2 1 35 35 H 1.08992 * 109.47362 * 60.00568 * 4 3 2 36 36 H 1.08998 * 109.47303 * 300.00046 * 4 3 2 37 37 H 1.08998 * 109.46946 * 299.99951 * 5 4 3 38 38 H 1.09001 * 109.47418 * 59.99629 * 5 4 3 39 39 H 1.08005 * 119.97204 * 0.02799 * 7 6 5 40 40 H 1.08003 * 119.94697 * 180.21130 * 8 7 6 41 41 H 1.08997 * 109.46870 * 270.02172 * 10 9 8 42 42 H 1.09007 * 109.46995 * 30.01953 * 10 9 8 43 43 H 1.08996 * 109.47019 * 150.02076 * 10 9 8 44 44 H 1.07999 * 120.03144 * 179.97438 * 11 9 8 45 45 H 1.09000 * 111.00278 * 271.93879 * 16 14 13 46 46 H 1.08995 * 111.00604 * 35.79161 * 16 14 13 47 47 H 1.09005 * 110.36411 * 204.15133 * 17 16 14 48 48 H 1.08998 * 110.46169 * 81.87660 * 17 16 14 49 49 H 0.97003 * 119.99661 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.88186 * 239.52324 * 27 18 17 51 51 H 1.08999 * 110.01226 * 118.42831 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5872 2.8848 -0.0013 7 6 6.2796 2.9940 1.1894 8 6 7.6620 2.9896 1.1892 9 6 8.3554 2.8857 -0.0028 10 6 9.8624 2.8865 0.0003 11 6 7.6678 2.7817 -1.1962 12 6 6.2803 2.7810 -1.1983 13 8 5.6015 2.6782 -2.3712 14 6 6.3806 2.5743 -3.5647 15 1 7.2557 1.9461 -3.3986 16 6 5.5213 2.0272 -4.7351 17 6 6.2575 2.6177 -5.9636 18 7 6.6942 3.9583 -5.5334 19 6 6.9577 5.0160 -6.3623 20 1 6.9264 6.0247 -5.9774 21 6 7.2652 4.7918 -7.6972 22 7 7.0828 5.7473 -8.5840 23 14 7.9378 3.1342 -8.2352 24 1 6.8109 2.1987 -8.4804 25 1 8.7238 3.3006 -9.4840 26 1 8.8134 2.5855 -7.1685 27 6 6.7991 3.9721 -4.0670 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8908 36 1 3.9338 0.9284 0.8891 37 1 3.7165 3.3992 -0.8895 38 1 3.7172 3.3982 0.8904 39 1 5.7403 3.0790 2.1213 40 1 8.2015 3.0716 2.1213 41 1 10.2252 3.9105 -0.0880 42 1 10.2240 2.4520 0.9323 43 1 10.2277 2.2977 -0.8410 44 1 8.2097 2.7010 -2.1269 45 1 5.5382 0.9375 -4.7560 46 1 4.4986 2.3995 -4.6762 47 1 5.5778 2.6943 -6.8124 48 1 7.1194 2.0030 -6.2230 49 1 7.2981 5.5907 -9.5168 50 1 6.1322 4.7292 -3.6547 51 1 7.8264 4.1810 -3.7685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229593547.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:00 Heat of formation + Delta-G solvation = -18.325457 kcal Electronic energy + Delta-G solvation = -26947.031520 eV Core-core repulsion = 23425.150243 eV Total energy + Delta-G solvation = -3521.881277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.39791 -38.29893 -36.44921 -36.35096 -33.89512 -32.38776 -31.19683 -30.21506 -29.42790 -28.30028 -27.79868 -25.10346 -24.42345 -22.66952 -22.24065 -21.21896 -21.07715 -20.38615 -20.13425 -17.53940 -17.04532 -16.22939 -15.64334 -15.56673 -15.53179 -14.97484 -14.39111 -14.20098 -14.05553 -13.88036 -13.63549 -13.44016 -13.40340 -13.26155 -12.88153 -12.65505 -12.41937 -12.31586 -12.02909 -12.00537 -11.87892 -11.60141 -11.46778 -11.41726 -11.23762 -11.06304 -11.00158 -10.90051 -10.70840 -10.54417 -10.43446 -10.30424 -10.17408 -10.05182 -9.52898 -8.70076 -8.64163 -7.93571 -7.08152 -5.99352 -3.31881 1.34186 1.52152 3.31139 3.35485 3.44725 3.47590 3.75075 4.50906 4.58373 4.74593 4.76564 4.82907 4.86650 4.92572 4.99745 5.04866 5.10176 5.18446 5.22705 5.29562 5.30526 5.35669 5.40778 5.49523 5.54453 5.56020 5.62572 5.65294 5.67601 5.77054 5.81239 5.82376 5.85257 5.91863 5.93049 5.96005 6.08656 6.15333 6.18083 6.22705 6.34278 6.38240 6.43265 6.47628 6.53641 6.60637 6.64259 6.66659 6.92452 7.64085 7.68393 8.27459 8.78814 9.63675 10.11646 11.16657 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003721 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.304393 B = 7522.193324 C = 9533.927576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.069 4.069 6 C -0.124 4.124 7 C -0.079 4.079 8 C -0.164 4.164 9 C -0.051 4.051 10 C -0.116 4.116 11 C -0.207 4.207 12 C 0.146 3.854 13 O -0.298 6.298 14 C 0.069 3.931 15 H 0.078 0.922 16 C -0.120 4.120 17 C 0.115 3.885 18 N -0.604 5.604 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.026 3.974 22 N -0.905 5.905 23 Si 0.880 3.120 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.277 1.277 27 C 0.117 3.883 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.131 0.869 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.264 0.736 50 H 0.044 0.956 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 -11.080 21.244 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.098 4.098 8 C -0.182 4.182 9 C -0.051 4.051 10 C -0.172 4.172 11 C -0.225 4.225 12 C 0.100 3.900 13 O -0.211 6.211 14 C 0.012 3.988 15 H 0.096 0.904 16 C -0.159 4.159 17 C -0.011 4.011 18 N -0.332 5.332 19 C -0.371 4.371 20 H 0.109 0.891 21 C -0.173 4.173 22 N -0.548 5.548 23 Si 0.710 3.290 24 H -0.210 1.210 25 H -0.228 1.228 26 H -0.203 1.203 27 C -0.009 4.009 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.148 0.852 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.916 -10.935 20.972 24.157 hybrid contribution 0.832 -0.839 -0.520 1.291 sum -4.084 -11.774 20.452 23.950 Atomic orbital electron populations 1.21783 0.96095 1.01375 1.01775 1.21533 0.95641 0.97193 1.01898 1.21628 0.95531 0.96538 1.02025 1.21538 0.94822 0.96325 1.02117 1.20395 0.90286 0.97263 1.02687 1.19187 0.95984 1.06815 0.90475 1.20783 0.93899 0.98478 0.96592 1.20831 0.94051 1.05997 0.97334 1.19670 0.95858 0.97061 0.92548 1.20810 0.91282 1.02564 1.02567 1.21247 0.93195 1.08983 0.99122 1.18846 0.90285 0.94848 0.86028 1.86137 1.35493 1.86985 1.12440 1.23575 0.94379 0.98293 0.82503 0.90394 1.22834 1.00152 0.99685 0.93184 1.21958 0.96169 0.87222 0.95702 1.44635 1.78706 1.09259 1.00601 1.18617 1.42388 0.86010 0.90097 0.89128 1.25073 0.99681 0.96953 0.95633 1.69849 1.49494 1.33611 1.01824 0.86965 0.79777 0.85137 0.77126 1.21008 1.22794 1.20274 1.21819 0.98700 0.93952 0.86423 0.92917 0.92675 0.93002 0.92016 0.92307 0.92260 0.91795 0.91624 0.92423 0.90531 0.91597 0.85851 0.86364 0.90936 0.91609 0.91537 0.85165 0.90854 0.89764 0.91604 0.95595 0.92592 0.93791 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.09 5.22 -26.73 -0.14 -1.23 16 4 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 5 C -0.07 -0.79 5.07 -27.88 -0.14 -0.93 16 6 C -0.12 -1.61 5.15 -104.47 -0.54 -2.15 16 7 C -0.08 -0.90 9.68 -39.61 -0.38 -1.29 16 8 C -0.16 -1.85 9.70 -39.56 -0.38 -2.24 16 9 C -0.05 -0.64 5.88 -104.65 -0.62 -1.25 16 10 C -0.12 -1.15 10.01 36.00 0.36 -0.79 16 11 C -0.21 -2.96 8.49 -39.43 -0.33 -3.29 16 12 C 0.15 2.17 6.59 -39.22 -0.26 1.91 16 13 O -0.30 -4.82 9.02 -19.44 -0.18 -4.99 16 14 C 0.07 1.18 2.78 -24.90 -0.07 1.11 16 15 H 0.08 1.24 6.36 -51.93 -0.33 0.91 16 16 C -0.12 -2.05 6.81 -24.58 -0.17 -2.22 16 17 C 0.11 2.47 4.72 -2.53 -0.01 2.46 16 18 N -0.60 -14.81 3.16 -170.08 -0.54 -15.34 16 19 C -0.24 -7.00 10.55 -15.06 -0.16 -7.16 16 20 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 21 C 0.03 0.75 5.43 -17.43 -0.09 0.66 16 22 N -0.90 -27.90 13.97 55.49 0.78 -27.12 16 23 Si 0.88 22.37 24.34 -169.99 -4.14 18.23 16 24 H -0.28 -6.87 6.63 56.52 0.37 -6.49 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.28 -6.93 6.81 56.52 0.39 -6.54 16 27 C 0.12 2.40 6.59 -3.07 -0.02 2.38 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16 39 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 44 H 0.13 1.89 5.50 -52.49 -0.29 1.60 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.07 1.50 7.07 -51.93 -0.37 1.13 16 48 H 0.03 0.58 5.56 -51.93 -0.29 0.29 16 49 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 50 H 0.04 0.94 8.06 -51.93 -0.42 0.53 16 51 H 0.03 0.70 7.71 -51.93 -0.40 0.30 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -30.98 397.08 -10.25 -41.23 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -9.27 Total: -0.67 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.88 Total: -17.32 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.24 Total: -42.47 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.18 Total: -4.99 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.98 -10.25 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229593547.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.903 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds