Wall clock time and date at job start Tue Mar 31 2020 12:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 C 1.53005 * 109.46657 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47046 * 180.02562 * 5 4 3 7 7 C 1.38166 * 120.02683 * 264.71727 * 6 5 4 8 8 C 1.38239 * 120.05314 * 179.78946 * 7 6 5 9 9 C 1.38293 * 120.11322 * 0.47056 * 8 7 6 10 10 C 1.50699 * 119.97268 * 179.76594 * 9 8 7 11 11 C 1.38122 * 120.05554 * 359.78879 * 9 8 7 12 12 C 1.38713 * 120.02872 * 85.00122 * 6 5 4 13 13 O 1.35906 * 120.05339 * 359.95087 * 12 6 5 14 14 C 1.42902 * 116.99694 * 180.02562 * 13 12 6 15 15 H 1.08997 * 110.63858 * 38.90115 * 14 13 12 16 16 C 1.55162 * 110.71554 * 162.23583 * 14 13 12 17 17 C 1.54913 * 101.57628 * 153.86832 * 16 14 13 18 18 N 1.47418 * 104.83261 * 322.98688 * 17 16 14 19 19 C 1.36935 * 125.65207 * 204.16619 * 18 17 16 20 20 H 1.08003 * 120.00586 * 158.17616 * 19 18 17 21 21 C 1.38817 * 119.99716 * 338.17772 * 19 18 17 22 22 N 1.31622 * 119.99798 * 157.27638 * 21 19 18 23 23 Si 1.86798 * 120.00116 * 337.27494 * 21 19 18 24 24 H 1.48503 * 109.46949 * 84.78583 * 23 21 19 25 25 H 1.48490 * 109.47381 * 204.78657 * 23 21 19 26 26 H 1.48505 * 109.47207 * 324.79247 * 23 21 19 27 27 C 1.47022 * 108.70529 * 24.13325 * 18 17 16 28 28 H 1.09005 * 109.46695 * 300.00031 * 1 2 3 29 29 H 1.09004 * 109.46773 * 59.99472 * 1 2 3 30 30 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46695 * 239.99969 * 2 1 3 32 32 H 1.08998 * 109.47080 * 120.00222 * 2 1 3 33 33 H 1.08997 * 109.46847 * 60.00722 * 3 2 1 34 34 H 1.08998 * 109.47302 * 300.00086 * 3 2 1 35 35 H 1.08992 * 109.47362 * 60.00568 * 4 3 2 36 36 H 1.08998 * 109.47303 * 300.00046 * 4 3 2 37 37 H 1.08998 * 109.46946 * 299.99951 * 5 4 3 38 38 H 1.09001 * 109.47418 * 59.99629 * 5 4 3 39 39 H 1.08005 * 119.97204 * 0.02799 * 7 6 5 40 40 H 1.08003 * 119.94697 * 180.21130 * 8 7 6 41 41 H 1.08997 * 109.46870 * 270.02172 * 10 9 8 42 42 H 1.09007 * 109.46995 * 30.01953 * 10 9 8 43 43 H 1.08996 * 109.47019 * 150.02076 * 10 9 8 44 44 H 1.07999 * 120.03144 * 179.97438 * 11 9 8 45 45 H 1.09000 * 111.00278 * 271.93879 * 16 14 13 46 46 H 1.08995 * 111.00604 * 35.79161 * 16 14 13 47 47 H 1.09005 * 110.36411 * 204.15133 * 17 16 14 48 48 H 1.08998 * 110.46169 * 81.87660 * 17 16 14 49 49 H 0.97003 * 119.99661 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.88186 * 239.52324 * 27 18 17 51 51 H 1.08999 * 110.01226 * 118.42831 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5872 2.8848 -0.0013 7 6 6.2796 2.9940 1.1894 8 6 7.6620 2.9896 1.1892 9 6 8.3554 2.8857 -0.0028 10 6 9.8624 2.8865 0.0003 11 6 7.6678 2.7817 -1.1962 12 6 6.2803 2.7810 -1.1983 13 8 5.6015 2.6782 -2.3712 14 6 6.3806 2.5743 -3.5647 15 1 7.2557 1.9461 -3.3986 16 6 5.5213 2.0272 -4.7351 17 6 6.2575 2.6177 -5.9636 18 7 6.6942 3.9583 -5.5334 19 6 6.9577 5.0160 -6.3623 20 1 6.9264 6.0247 -5.9774 21 6 7.2652 4.7918 -7.6972 22 7 7.0828 5.7473 -8.5840 23 14 7.9378 3.1342 -8.2352 24 1 6.8109 2.1987 -8.4804 25 1 8.7238 3.3006 -9.4840 26 1 8.8134 2.5855 -7.1685 27 6 6.7991 3.9721 -4.0670 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8908 36 1 3.9338 0.9284 0.8891 37 1 3.7165 3.3992 -0.8895 38 1 3.7172 3.3982 0.8904 39 1 5.7403 3.0790 2.1213 40 1 8.2015 3.0716 2.1213 41 1 10.2252 3.9105 -0.0880 42 1 10.2240 2.4520 0.9323 43 1 10.2277 2.2977 -0.8410 44 1 8.2097 2.7010 -2.1269 45 1 5.5382 0.9375 -4.7560 46 1 4.4986 2.3995 -4.6762 47 1 5.5778 2.6943 -6.8124 48 1 7.1194 2.0030 -6.2230 49 1 7.2981 5.5907 -9.5168 50 1 6.1322 4.7292 -3.6547 51 1 7.8264 4.1810 -3.7685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229593547.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:59 Heat of formation + Delta-G solvation = -33.603632 kcal Electronic energy + Delta-G solvation = -26947.694031 eV Core-core repulsion = 23425.150243 eV Total energy + Delta-G solvation = -3522.543788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51729 -39.61199 -37.83760 -37.18442 -34.81161 -34.38574 -32.00046 -31.78528 -30.69681 -29.80701 -28.70206 -26.45781 -25.75924 -23.84652 -23.11337 -22.77520 -21.82007 -21.60039 -21.45118 -19.08624 -18.67902 -17.33589 -17.21710 -16.75446 -16.51473 -16.35453 -15.69478 -15.50821 -15.08094 -15.03855 -14.77892 -14.55644 -14.36928 -14.22639 -14.12080 -14.01144 -13.89306 -13.67115 -13.19327 -13.17002 -12.98750 -12.82056 -12.68344 -12.54506 -12.35943 -12.32664 -12.18975 -12.03986 -11.80158 -11.67871 -11.65875 -11.57853 -11.52271 -11.31115 -11.27442 -10.83758 -9.61411 -9.13846 -8.95764 -8.24566 -5.55227 0.38892 0.53267 1.28432 1.36876 1.46565 2.13080 2.37273 2.78978 2.95867 3.27567 3.53341 3.68861 3.74934 3.83444 3.94156 3.96670 4.09704 4.17025 4.18182 4.26910 4.32268 4.35602 4.42232 4.50412 4.62395 4.66918 4.70445 4.73982 4.75998 4.80850 4.82551 4.83006 4.85615 4.93381 4.94527 4.99239 5.07583 5.10847 5.11789 5.16407 5.24947 5.33657 5.40279 5.44505 5.48590 5.56453 5.60782 5.65000 5.70403 5.95812 6.03712 6.49352 6.66650 7.44213 8.00029 8.95324 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003721 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.304393 B = 7522.193324 C = 9533.927576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.103 4.103 5 C -0.067 4.067 6 C -0.132 4.132 7 C -0.078 4.078 8 C -0.160 4.160 9 C -0.061 4.061 10 C -0.115 4.115 11 C -0.224 4.224 12 C 0.116 3.884 13 O -0.304 6.304 14 C 0.085 3.915 15 H 0.095 0.905 16 C -0.107 4.107 17 C 0.107 3.893 18 N -0.622 5.622 19 C -0.246 4.246 20 H 0.051 0.949 21 C -0.030 4.030 22 N -0.952 5.952 23 Si 0.947 3.053 24 H -0.261 1.261 25 H -0.303 1.303 26 H -0.268 1.268 27 C 0.117 3.883 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.051 0.949 48 H 0.034 0.966 49 H 0.266 0.734 50 H 0.026 0.974 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -13.729 23.984 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.140 4.140 5 C -0.104 4.104 6 C -0.133 4.133 7 C -0.096 4.096 8 C -0.178 4.178 9 C -0.061 4.061 10 C -0.171 4.171 11 C -0.243 4.243 12 C 0.071 3.929 13 O -0.218 6.218 14 C 0.028 3.972 15 H 0.113 0.887 16 C -0.145 4.145 17 C -0.018 4.018 18 N -0.350 5.350 19 C -0.374 4.374 20 H 0.069 0.931 21 C -0.225 4.225 22 N -0.598 5.598 23 Si 0.774 3.226 24 H -0.187 1.187 25 H -0.231 1.231 26 H -0.193 1.193 27 C -0.008 4.008 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.051 0.949 49 H 0.075 0.925 50 H 0.044 0.956 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.843 -13.612 23.751 27.800 hybrid contribution 0.789 0.103 -1.211 1.449 sum -4.054 -13.510 22.540 26.589 Atomic orbital electron populations 1.21781 0.95478 1.01880 1.01862 1.21525 0.96196 0.96596 1.01890 1.21597 0.94673 0.97103 1.02016 1.21458 0.95519 0.95419 1.01624 1.20399 0.89511 0.97924 1.02546 1.19483 0.96813 1.06543 0.90440 1.21166 0.94232 0.97127 0.97048 1.21227 0.94286 1.04231 0.98021 1.20007 0.97199 0.96577 0.92348 1.20854 0.89697 1.02875 1.03707 1.21312 0.93134 1.10145 0.99672 1.19155 0.90841 0.96918 0.86012 1.86114 1.35451 1.87590 1.12597 1.23307 0.95067 0.95674 0.83134 0.88731 1.22765 0.99301 1.01742 0.90718 1.22094 0.96479 0.85838 0.97354 1.44694 1.78954 1.09549 1.01845 1.18494 1.41965 0.86022 0.90936 0.93073 1.25739 1.00127 1.01114 0.95556 1.69978 1.51246 1.36309 1.02237 0.85891 0.79474 0.80746 0.76473 1.18670 1.23123 1.19294 1.21866 0.98281 0.96351 0.84345 0.92248 0.93190 0.92321 0.92806 0.91535 0.91111 0.92948 0.93513 0.91406 0.92718 0.89635 0.82879 0.83478 0.90727 0.89400 0.91756 0.86156 0.86952 0.89873 0.93024 0.94885 0.92539 0.95575 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.90 5.93 30.59 0.18 -1.72 16 3 C -0.12 -1.95 5.22 30.60 0.16 -1.79 16 4 C -0.10 -1.97 5.20 30.60 0.16 -1.81 16 5 C -0.07 -1.43 5.07 29.85 0.15 -1.28 16 6 C -0.13 -3.23 5.15 -19.77 -0.10 -3.33 16 7 C -0.08 -1.54 9.68 22.25 0.22 -1.32 16 8 C -0.16 -3.11 9.70 22.28 0.22 -2.90 16 9 C -0.06 -1.40 5.88 -19.88 -0.12 -1.52 16 10 C -0.11 -2.04 10.01 71.24 0.71 -1.33 16 11 C -0.22 -6.24 8.49 22.36 0.19 -6.05 16 12 C 0.12 3.38 6.59 22.51 0.15 3.53 16 13 O -0.30 -9.76 9.02 -92.49 -0.83 -10.59 16 14 C 0.09 2.84 2.78 31.78 0.09 2.92 16 15 H 0.09 2.86 6.36 -2.39 -0.02 2.84 16 16 C -0.11 -3.48 6.81 31.99 0.22 -3.26 16 17 C 0.11 4.48 4.72 86.86 0.41 4.89 16 18 N -0.62 -31.05 3.16 -692.00 -2.18 -33.23 16 19 C -0.25 -14.67 10.55 84.04 0.89 -13.78 16 20 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 21 C -0.03 -1.79 5.43 84.86 0.46 -1.33 16 22 N -0.95 -60.77 13.97 21.65 0.30 -60.47 16 23 Si 0.95 46.50 24.34 68.60 1.67 48.17 16 24 H -0.26 -11.83 6.63 99.48 0.66 -11.17 16 25 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 26 H -0.27 -12.64 6.81 99.48 0.68 -11.96 16 27 C 0.12 4.92 6.59 86.73 0.57 5.50 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.41 7.69 -2.39 -0.02 1.39 16 38 H 0.09 1.47 8.05 -2.39 -0.02 1.45 16 39 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.16 8.09 -2.38 -0.02 1.14 16 43 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 44 H 0.12 3.48 5.50 -2.91 -0.02 3.47 16 45 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.05 2.30 7.07 -2.38 -0.02 2.28 16 48 H 0.03 1.37 5.56 -2.39 -0.01 1.36 16 49 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 50 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 51 H 0.03 1.37 7.71 -2.39 -0.02 1.35 16 Total: -1.00 -69.53 397.08 5.01 -64.52 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.79 Total: 17.56 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 5.26 Total: -25.96 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -1.88 Total: -93.70 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.83 Total: -10.59 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.67 Total: 48.17 kcal Total: -69.53 5.01 -64.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229593547.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.916 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds