Wall clock time and date at job start Tue Mar 31 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.50700 * 109.46971 * 119.99974 * 2 1 3 5 5 C 1.38287 * 119.94237 * 300.01907 * 4 2 1 6 6 C 1.38125 * 120.05227 * 179.75025 * 5 4 2 7 7 C 1.38751 * 119.94584 * 0.50639 * 6 5 4 8 8 O 1.35905 * 120.06044 * 179.74861 * 7 6 5 9 9 C 1.42893 * 116.99407 * 5.80549 * 8 7 6 10 10 C 1.53520 * 114.16651 * 156.73442 * 9 8 7 11 11 N 1.47481 * 87.93272 * 87.81542 * 10 9 8 12 12 C 1.46891 * 111.00033 * 138.70335 * 11 10 9 13 13 C 1.50708 * 109.47228 * 170.00021 * 12 11 10 14 14 H 1.08000 * 119.99637 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00432 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99722 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00430 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47072 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46604 * 300.00432 * 17 15 13 20 20 H 1.48496 * 109.46730 * 59.99827 * 17 15 13 21 21 C 1.47483 * 87.83631 * 27.00998 * 11 10 9 22 22 C 1.38719 * 119.88500 * 359.47560 * 7 6 5 23 23 C 1.50705 * 120.02359 * 180.29855 * 22 7 6 24 24 C 1.52996 * 109.47266 * 120.00055 * 23 22 7 25 25 C 1.53000 * 109.46517 * 239.99728 * 23 22 7 26 26 C 1.38165 * 119.94419 * 0.27174 * 22 7 6 27 27 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47432 * 300.00020 * 1 2 3 29 29 H 1.08997 * 109.47583 * 60.00171 * 1 2 3 30 30 H 1.08999 * 109.46720 * 240.00195 * 2 1 3 31 31 H 1.08990 * 109.47170 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.47052 * 300.00325 * 3 2 1 33 33 H 1.09003 * 109.47476 * 59.99596 * 3 2 1 34 34 H 1.07994 * 119.97352 * 0.02562 * 5 4 2 35 35 H 1.07998 * 120.02910 * 180.28290 * 6 5 4 36 36 H 1.09003 * 113.26367 * 23.78964 * 9 8 7 37 37 H 1.09000 * 113.47631 * 333.04993 * 10 9 8 38 38 H 1.08997 * 113.52941 * 202.58982 * 10 9 8 39 39 H 1.08996 * 109.47548 * 50.00269 * 12 11 10 40 40 H 1.09003 * 109.47376 * 289.99887 * 12 11 10 41 41 H 0.97008 * 119.99775 * 179.97438 * 16 15 13 42 42 H 1.09002 * 113.47283 * 87.75315 * 21 11 10 43 43 H 1.08991 * 113.47837 * 218.22636 * 21 11 10 44 44 H 1.08995 * 109.47376 * 359.97438 * 23 22 7 45 45 H 1.09007 * 109.47212 * 59.99221 * 24 23 22 46 46 H 1.08997 * 109.47225 * 179.97438 * 24 23 22 47 47 H 1.09001 * 109.47027 * 299.99603 * 24 23 22 48 48 H 1.09005 * 109.47472 * 60.00267 * 25 23 22 49 49 H 1.08997 * 109.47041 * 180.02562 * 25 23 22 50 50 H 1.09007 * 109.47530 * 300.00106 * 25 23 22 51 51 H 1.07997 * 119.96693 * 179.97438 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6972 -0.2371 2.4859 6 6 2.1520 -0.8895 3.6152 7 6 2.9545 -2.0144 3.4893 8 8 3.4076 -2.6551 4.5989 9 6 2.9169 -2.1947 5.8595 10 6 2.9860 -3.2408 6.9809 11 7 4.3562 -2.7725 7.2605 12 6 4.5992 -2.6892 8.7068 13 6 6.0659 -2.4487 8.9567 14 1 6.7489 -2.3656 8.1243 15 6 6.5354 -2.3337 10.2479 16 7 5.7035 -2.4343 11.2615 17 14 8.3532 -2.0349 10.5577 18 1 8.5988 -1.9508 12.0198 19 1 9.1432 -3.1554 9.9870 20 1 8.7625 -0.7616 9.9124 21 6 3.9594 -1.4611 6.7148 22 6 3.2889 -2.4873 2.2288 23 6 4.1548 -3.7128 2.0884 24 6 3.3890 -4.7934 1.3226 25 6 5.4294 -3.3515 1.3230 26 6 2.8271 -1.8342 1.1023 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.0756 0.6406 2.5834 35 1 1.8863 -0.5222 4.5954 36 1 1.9581 -1.6812 5.7867 37 1 2.9435 -4.2683 6.6195 38 1 2.2877 -3.0516 7.7961 39 1 4.2985 -3.6238 9.1802 40 1 4.0196 -1.8666 9.1259 41 1 6.0339 -2.3538 12.1700 42 1 3.5206 -0.7961 7.4587 43 1 4.7419 -0.9802 6.1279 44 1 4.4190 -4.0862 3.0777 45 1 3.1250 -4.4196 0.3332 46 1 4.0154 -5.6795 1.2207 47 1 2.4809 -5.0507 1.8679 48 1 5.9751 -2.5816 1.8686 49 1 6.0555 -4.2379 1.2210 50 1 5.1655 -2.9777 0.3336 51 1 3.0875 -2.2018 0.1208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229679734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:14 Heat of formation + Delta-G solvation = 3.535679 kcal Electronic energy + Delta-G solvation = -26800.026829 eV Core-core repulsion = 23279.093522 eV Total energy + Delta-G solvation = -3520.933307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65273 -39.34523 -37.23100 -36.01787 -34.10533 -32.85030 -30.10508 -29.59855 -28.46109 -27.35731 -27.11241 -25.63034 -25.26569 -23.73787 -23.08948 -21.74661 -20.89339 -19.47680 -19.17680 -17.86914 -16.39740 -16.34757 -15.50605 -15.35283 -14.87912 -14.75340 -14.67518 -14.38454 -13.98936 -13.84544 -13.70281 -13.51461 -13.37348 -13.06684 -12.99518 -12.59921 -12.51510 -12.28523 -12.08382 -12.04122 -11.90985 -11.66926 -11.38046 -11.30200 -11.11370 -11.05560 -10.98570 -10.88587 -10.60889 -10.51952 -10.36899 -10.28504 -9.98804 -9.66386 -9.28182 -8.80353 -8.43639 -7.90087 -7.84143 -6.04144 -4.05124 1.34745 1.45918 3.28434 3.34261 3.37405 3.41578 3.71844 4.42406 4.49783 4.59392 4.68458 4.71752 4.81943 4.90637 4.99716 5.06318 5.07994 5.20212 5.25377 5.30538 5.31133 5.37231 5.39050 5.48088 5.60199 5.60560 5.62361 5.66801 5.72963 5.82019 5.83496 5.86348 5.87058 5.97460 6.01747 6.04249 6.07066 6.11233 6.16181 6.23878 6.28339 6.30526 6.43002 6.59762 6.61251 6.64180 6.87347 7.13047 7.63367 7.65687 7.85119 8.08991 8.44722 9.02355 9.59050 11.06954 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.002756 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.626449 B =10155.874337 C =10659.339266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.121 4.121 5 C -0.079 4.079 6 C -0.206 4.206 7 C 0.136 3.864 8 O -0.273 6.273 9 C 0.045 3.955 10 C 0.000 4.000 11 N -0.455 5.455 12 C 0.156 3.844 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.006 4.006 22 C -0.106 4.106 23 C -0.054 4.054 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.076 4.076 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.003 0.997 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 3.377 -23.377 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.225 4.225 7 C 0.090 3.910 8 O -0.186 6.186 9 C -0.012 4.012 10 C -0.129 4.129 11 N -0.178 5.178 12 C 0.030 3.970 13 C -0.542 4.542 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.072 4.072 24 C -0.197 4.197 25 C -0.198 4.198 26 C -0.094 4.094 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.021 0.979 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.355 2.843 -23.370 25.719 hybrid contribution 0.170 0.842 1.051 1.358 sum -10.186 3.685 -22.319 24.808 Atomic orbital electron populations 1.21861 0.94685 1.01891 1.01656 1.20010 0.95626 0.95822 0.95364 1.21864 1.01310 0.95323 1.01657 1.19636 1.00889 0.97178 0.94452 1.20672 0.98750 0.98864 0.91385 1.21268 1.03420 0.97957 0.99832 1.18941 0.93418 0.91491 0.87102 1.86162 1.64778 1.55618 1.11993 1.23686 0.97020 0.98461 0.82015 1.23997 0.94509 0.99762 0.94656 1.69084 1.19221 1.10532 1.18936 1.20298 0.97819 0.96747 0.82109 1.21058 0.92861 1.48298 0.92030 0.91889 1.25002 0.98142 0.95508 0.96057 1.69946 1.34663 1.50774 0.98731 0.86527 0.85014 0.78878 0.76826 1.21332 1.20104 1.20240 1.24238 0.97202 0.94842 0.97231 1.19176 1.02474 0.99116 0.89917 1.19974 0.93828 0.92257 1.01157 1.21829 1.00164 0.98010 0.99698 1.21829 0.96798 1.01520 0.99630 1.20641 0.96740 0.94565 0.97463 0.92603 0.92550 0.92685 0.90829 0.92526 0.92693 0.92519 0.86318 0.85286 0.89807 0.89765 0.90539 0.95203 0.97887 0.92860 0.90708 0.90039 0.89133 0.92953 0.92522 0.92718 0.92469 0.92514 0.93006 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.01 37.16 0.33 -0.71 16 2 C -0.05 -0.40 3.09 -91.77 -0.28 -0.69 16 3 C -0.14 -1.09 9.01 37.16 0.33 -0.76 16 4 C -0.12 -1.27 4.78 -104.60 -0.50 -1.77 16 5 C -0.08 -0.87 8.70 -39.61 -0.34 -1.21 16 6 C -0.21 -2.64 9.03 -39.43 -0.36 -2.99 16 7 C 0.14 1.97 6.65 -39.21 -0.26 1.71 16 8 O -0.27 -4.53 8.96 -19.44 -0.17 -4.71 16 9 C 0.05 0.72 4.06 -26.19 -0.11 0.61 16 10 C 0.00 0.00 7.52 -7.54 -0.06 -0.05 16 11 N -0.45 -10.14 6.32 -246.09 -1.55 -11.69 16 12 C 0.16 4.11 4.57 -4.98 -0.02 4.09 16 13 C -0.50 -14.61 9.39 -34.44 -0.32 -14.93 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.01 -0.10 7.56 -7.54 -0.06 -0.16 16 22 C -0.11 -1.37 4.79 -104.47 -0.50 -1.87 16 23 C -0.05 -0.66 3.06 -91.77 -0.28 -0.94 16 24 C -0.14 -1.42 9.01 37.16 0.33 -1.09 16 25 C -0.14 -1.54 9.01 37.16 0.33 -1.20 16 26 C -0.08 -0.84 8.33 -39.61 -0.33 -1.17 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 34 H 0.12 1.10 7.09 -52.49 -0.37 0.72 16 35 H 0.13 1.54 5.89 -52.49 -0.31 1.23 16 36 H 0.08 1.11 5.91 -51.93 -0.31 0.81 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 39 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.00 0.09 7.30 -51.93 -0.38 -0.29 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 1.37 7.42 -51.93 -0.39 0.99 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.09 1.32 6.99 -51.93 -0.36 0.96 16 45 H 0.05 0.47 7.39 -51.92 -0.38 0.08 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.05 0.49 7.39 -51.92 -0.38 0.11 16 51 H 0.12 1.13 6.99 -52.49 -0.37 0.77 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -31.02 400.98 -11.18 -42.20 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -9.03 Total: -0.98 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.18 Total: -21.67 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.82 Total: -37.95 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.17 Total: -4.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.02 -11.18 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229679734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.733 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds