Wall clock time and date at job start Tue Mar 31 2020 12:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47583 * 2 1 4 4 C 1.50699 * 109.46941 * 120.00123 * 2 1 3 5 5 C 1.38295 * 119.94301 * 299.99485 * 4 2 1 6 6 C 1.38122 * 120.05735 * 180.02562 * 5 4 2 7 7 C 1.38750 * 119.94219 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05649 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99685 * 5.89898 * 8 7 6 10 10 H 1.09006 * 110.89036 * 38.16288 * 9 8 7 11 11 C 1.55157 * 111.00343 * 162.08828 * 9 8 7 12 12 C 1.54339 * 103.01837 * 153.38092 * 11 9 8 13 13 N 1.47017 * 107.26499 * 338.13801 * 12 11 9 14 14 C 1.36941 * 125.64510 * 178.85198 * 13 12 11 15 15 H 1.07995 * 119.99542 * 182.26241 * 14 13 12 16 16 C 1.38807 * 119.99984 * 2.26325 * 14 13 12 17 17 N 1.31621 * 119.99811 * 211.09380 * 16 14 13 18 18 Si 1.86801 * 120.00042 * 31.09907 * 16 14 13 19 19 H 1.48501 * 109.47161 * 275.69293 * 18 16 14 20 20 H 1.48498 * 109.46937 * 35.69638 * 18 16 14 21 21 H 1.48498 * 109.46776 * 155.69395 * 18 16 14 22 22 C 1.47421 * 108.70604 * 358.58597 * 13 12 11 23 23 C 1.38715 * 119.89243 * 0.27732 * 7 6 5 24 24 C 1.50690 * 120.03010 * 179.72478 * 23 7 6 25 25 C 1.53002 * 109.47313 * 119.99545 * 24 23 7 26 26 C 1.52996 * 109.47304 * 239.99983 * 24 23 7 27 27 C 1.38166 * 119.94124 * 359.48879 * 23 7 6 28 28 H 1.08998 * 109.46970 * 300.00276 * 1 2 3 29 29 H 1.09007 * 109.46738 * 60.00247 * 1 2 3 30 30 H 1.09003 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47202 * 239.99333 * 2 1 3 32 32 H 1.08999 * 109.47299 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46882 * 299.99665 * 3 2 1 34 34 H 1.09001 * 109.47093 * 59.99349 * 3 2 1 35 35 H 1.07999 * 119.96894 * 0.02562 * 5 4 2 36 36 H 1.07994 * 120.02544 * 179.97438 * 6 5 4 37 37 H 1.09004 * 110.71798 * 271.93690 * 11 9 8 38 38 H 1.08994 * 110.72415 * 35.21067 * 11 9 8 39 39 H 1.08997 * 109.98874 * 218.66199 * 12 11 9 40 40 H 1.09003 * 109.77600 * 97.49605 * 12 11 9 41 41 H 0.97000 * 120.00145 * 5.08828 * 17 16 14 42 42 H 1.09004 * 110.36947 * 143.19129 * 22 13 12 43 43 H 1.08998 * 110.37009 * 265.52331 * 22 13 12 44 44 H 1.09005 * 109.47462 * 0.02562 * 24 23 7 45 45 H 1.09002 * 109.47526 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47427 * 299.99901 * 25 24 23 47 47 H 1.09004 * 109.46764 * 60.00591 * 25 24 23 48 48 H 1.08994 * 109.47504 * 59.99599 * 26 24 23 49 49 H 1.09002 * 109.47546 * 180.02562 * 26 24 23 50 50 H 1.09008 * 109.46881 * 299.99896 * 26 24 23 51 51 H 1.07996 * 119.97177 * 180.23083 * 27 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6976 -0.2369 2.4859 6 6 2.1571 -0.8859 3.6153 7 6 2.9547 -2.0142 3.4893 8 8 3.4085 -2.6543 4.5990 9 6 2.9218 -2.1906 5.8600 10 1 1.8697 -1.9133 5.7925 11 6 3.1478 -3.2528 6.9681 12 6 3.2361 -2.4019 8.2527 13 7 3.6005 -1.0365 7.8474 14 6 3.7576 0.0311 8.6906 15 1 3.9919 1.0060 8.2894 16 6 3.6156 -0.1399 10.0607 17 7 3.1606 0.8470 10.8034 18 14 4.0705 -1.7704 10.8506 19 1 2.9246 -2.7090 10.7437 20 1 5.2487 -2.3462 10.1540 21 1 4.3996 -1.5521 12.2821 22 6 3.7750 -1.0084 6.3839 23 6 3.2934 -2.4842 2.2290 24 6 4.1647 -3.7056 2.0886 25 6 3.4047 -4.7886 1.3201 26 6 5.4391 -3.3382 1.3259 27 6 2.8273 -1.8342 1.1024 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5140 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.0763 0.6411 2.5834 36 1 1.8957 -0.5154 4.5954 37 1 2.3061 -3.9437 7.0174 38 1 4.0808 -3.7913 6.8017 39 1 3.9993 -2.8077 8.9167 40 1 2.2696 -2.3936 8.7567 41 1 2.8551 1.6674 10.3857 42 1 3.4086 -0.0662 5.9761 43 1 4.8236 -1.1530 6.1240 44 1 4.4280 -4.0798 3.0780 45 1 4.0351 -5.6720 1.2182 46 1 2.4968 -5.0505 1.8635 47 1 3.1411 -4.4148 0.3307 48 1 5.9805 -2.5667 1.8733 49 1 6.0691 -4.2218 1.2240 50 1 5.1754 -2.9644 0.3365 51 1 3.0876 -2.2019 0.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229681364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:17 Heat of formation + Delta-G solvation = -8.716790 kcal Electronic energy + Delta-G solvation = -27372.270412 eV Core-core repulsion = 23850.805798 eV Total energy + Delta-G solvation = -3521.464614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51356 -38.61585 -36.85130 -35.99918 -34.12142 -32.50434 -30.09218 -29.85343 -28.76045 -27.92418 -27.31108 -27.19605 -24.17179 -23.71371 -22.82450 -21.29603 -20.61829 -20.16902 -19.19881 -18.05802 -17.52673 -16.45798 -15.55263 -15.35783 -14.95403 -14.70110 -14.58352 -14.22624 -13.95702 -13.83950 -13.68643 -13.50679 -13.29157 -13.20112 -12.72238 -12.57694 -12.49744 -12.36380 -12.33439 -12.15737 -11.96716 -11.67644 -11.35884 -11.30512 -11.28758 -11.10050 -11.03585 -10.98140 -10.67457 -10.56675 -10.34465 -10.20378 -10.16101 -9.63744 -9.24322 -8.76643 -8.46408 -7.87701 -7.14935 -6.40900 -3.19190 1.38353 1.48980 3.32360 3.42432 3.52710 3.69792 3.75624 4.51675 4.61084 4.61695 4.72483 4.87546 4.92600 4.98668 5.03698 5.09451 5.14688 5.17373 5.18494 5.30350 5.32947 5.38449 5.44041 5.45803 5.49324 5.53441 5.62583 5.65676 5.68735 5.73983 5.75396 5.80831 5.83235 5.93484 5.95090 6.05639 6.07271 6.08969 6.12563 6.19294 6.22243 6.32153 6.43447 6.47954 6.51081 6.61281 6.66764 6.71156 6.90676 7.57980 7.68822 8.29550 8.97938 9.53895 10.19335 11.08268 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003448 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.680428 B = 8119.442966 C = 9382.475832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.200 4.200 7 C 0.137 3.863 8 O -0.303 6.303 9 C 0.068 3.932 10 H 0.083 0.917 11 C -0.119 4.119 12 C 0.114 3.886 13 N -0.605 5.605 14 C -0.338 4.338 15 H 0.081 0.919 16 C -0.011 4.011 17 N -0.907 5.907 18 Si 1.050 2.950 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.297 1.297 22 C 0.119 3.881 23 C -0.110 4.110 24 C -0.051 4.051 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.265 0.735 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 -7.412 -23.767 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.219 4.219 7 C 0.091 3.909 8 O -0.216 6.216 9 C 0.011 3.989 10 H 0.100 0.900 11 C -0.157 4.157 12 C -0.011 4.011 13 N -0.334 5.334 14 C -0.464 4.464 15 H 0.098 0.902 16 C -0.213 4.213 17 N -0.547 5.547 18 Si 0.882 3.118 19 H -0.220 1.220 20 H -0.220 1.220 21 H -0.225 1.225 22 C -0.008 4.008 23 C -0.111 4.111 24 C -0.070 4.070 25 C -0.198 4.198 26 C -0.198 4.198 27 C -0.096 4.096 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.528 -8.246 -22.224 23.839 hybrid contribution -0.162 1.010 -1.278 1.637 sum -2.690 -7.236 -23.502 24.737 Atomic orbital electron populations 1.21866 0.94663 1.01878 1.01736 1.20010 0.95659 0.95832 0.95276 1.21869 1.01271 0.95320 1.01743 1.19653 1.00799 0.97108 0.94459 1.20719 0.98599 0.98925 0.91337 1.21416 1.02832 0.97483 1.00177 1.18840 0.93705 0.91512 0.86811 1.86045 1.66058 1.56529 1.12943 1.23734 0.98235 0.96571 0.80365 0.89961 1.22626 1.02664 0.96982 0.93382 1.21700 0.99073 0.85745 0.94538 1.44733 1.81943 1.05794 1.00970 1.20002 1.49858 0.87417 0.89101 0.90166 1.25653 0.98568 1.04617 0.92440 1.70898 1.38205 1.07319 1.38234 0.84092 0.76637 0.75879 0.75204 1.21951 1.22045 1.22517 1.21974 0.97011 0.95539 0.86236 1.19130 1.02681 0.99251 0.89989 1.19941 0.93862 0.92412 1.00767 1.21836 1.00174 0.97887 0.99862 1.21836 0.96767 1.01346 0.99880 1.20612 0.96944 0.94702 0.97366 0.92464 0.92672 0.92627 0.90873 0.92555 0.92678 0.92425 0.86215 0.84959 0.90516 0.90284 0.94663 0.93590 0.92524 0.93278 0.95056 0.89560 0.92628 0.92681 0.92835 0.92537 0.92624 0.92844 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.01 37.16 0.33 -0.84 16 2 C -0.05 -0.44 3.09 -91.77 -0.28 -0.72 16 3 C -0.14 -1.23 9.01 37.16 0.33 -0.90 16 4 C -0.12 -1.35 4.78 -104.60 -0.50 -1.85 16 5 C -0.08 -0.98 8.70 -39.60 -0.34 -1.32 16 6 C -0.20 -2.92 8.72 -39.43 -0.34 -3.26 16 7 C 0.14 2.06 6.61 -39.22 -0.26 1.80 16 8 O -0.30 -4.95 8.72 -19.43 -0.17 -5.11 16 9 C 0.07 1.18 2.82 -24.58 -0.07 1.11 16 10 H 0.08 1.39 6.63 -51.93 -0.34 1.05 16 11 C -0.12 -2.05 6.68 -24.89 -0.17 -2.22 16 12 C 0.11 2.51 4.85 -3.06 -0.01 2.50 16 13 N -0.61 -15.09 3.34 -170.07 -0.57 -15.65 16 14 C -0.34 -9.72 10.41 -15.06 -0.16 -9.88 16 15 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 16 C -0.01 -0.33 5.42 -17.43 -0.09 -0.43 16 17 N -0.91 -28.23 13.70 55.49 0.76 -27.47 16 18 Si 1.05 26.53 24.65 -169.99 -4.19 22.34 16 19 H -0.29 -6.88 6.50 56.52 0.37 -6.51 16 20 H -0.29 -7.14 6.66 56.52 0.38 -6.76 16 21 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 22 C 0.12 2.49 6.60 -2.53 -0.02 2.47 16 23 C -0.11 -1.42 4.79 -104.48 -0.50 -1.92 16 24 C -0.05 -0.58 3.06 -91.78 -0.28 -0.87 16 25 C -0.14 -1.33 9.00 37.16 0.33 -1.00 16 26 C -0.14 -1.41 9.01 37.16 0.33 -1.07 16 27 C -0.08 -0.89 8.33 -39.60 -0.33 -1.22 16 28 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.59 7.87 -51.92 -0.41 0.18 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 35 H 0.12 1.34 7.09 -52.49 -0.37 0.96 16 36 H 0.13 2.03 5.30 -52.49 -0.28 1.75 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.81 4.21 -51.93 -0.22 0.59 16 40 H 0.05 1.04 7.31 -51.93 -0.38 0.66 16 41 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 42 H 0.05 1.02 7.23 -51.93 -0.38 0.65 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.12 6.99 -51.93 -0.36 0.75 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.45 7.38 -51.93 -0.38 0.07 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.05 0.47 7.40 -51.92 -0.38 0.09 16 51 H 0.12 1.14 6.99 -52.49 -0.37 0.77 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -31.03 387.12 -9.28 -40.31 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.93 Total: -0.63 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.02 Total: -19.62 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.19 Total: -43.12 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.17 Total: -5.11 kcal Atomic # 14 Polarization: 26.53 SS G_CDS: -4.19 Total: 22.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.03 -9.28 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229681364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.591 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds