Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44802 * 112.17716 * 2 1 4 4 C 1.53333 * 111.18577 * 52.24568 * 3 2 1 5 5 C 1.54491 * 108.20181 * 294.75862 * 3 2 1 6 6 C 1.52675 * 112.94590 * 175.85209 * 3 2 1 7 7 C 1.52840 * 110.35736 * 310.59258 * 6 3 2 8 8 O 1.43241 * 109.21773 * 179.14365 * 7 6 3 9 9 C 1.35644 * 116.99889 * 154.68032 * 8 7 6 10 10 C 1.38444 * 120.26754 * 5.30805 * 9 8 7 11 11 C 1.38311 * 120.05039 * 179.75207 * 10 9 8 12 12 C 1.38816 * 120.58853 * 0.55636 * 11 10 9 13 13 C 1.36491 * 120.54140 * 359.70044 * 12 11 10 14 14 C 1.40725 * 119.92728 * 0.02562 * 13 12 11 15 15 C 1.41158 * 120.28517 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99468 * 154.90721 * 15 14 13 17 17 C 1.39933 * 120.00038 * 334.90503 * 15 14 13 18 18 N 1.30859 * 120.00023 * 343.79352 * 17 15 14 19 19 Si 1.86799 * 119.99842 * 163.80176 * 17 15 14 20 20 H 1.48490 * 109.47474 * 89.99637 * 19 17 15 21 21 H 1.48500 * 109.47049 * 209.99962 * 19 17 15 22 22 H 1.48505 * 109.46999 * 329.99339 * 19 17 15 23 23 C 1.52837 * 108.54622 * 60.15341 * 7 6 3 24 24 C 1.44796 * 112.18433 * 138.96000 * 2 1 3 25 25 C 1.54501 * 108.18917 * 65.33027 * 24 2 1 26 26 C 1.53336 * 111.16632 * 307.87645 * 24 2 1 27 27 H 1.09004 * 109.46648 * 281.04012 * 1 2 3 28 28 H 1.08996 * 109.47321 * 41.04138 * 1 2 3 29 29 H 1.09002 * 109.47131 * 161.04305 * 1 2 3 30 30 H 1.08997 * 109.46893 * 185.53311 * 4 3 2 31 31 H 1.08993 * 109.46736 * 305.53610 * 4 3 2 32 32 H 1.08996 * 109.46664 * 65.53454 * 4 3 2 33 33 H 1.09003 * 109.47729 * 297.70928 * 5 3 2 34 34 H 1.09007 * 109.46992 * 57.70423 * 5 3 2 35 35 H 1.08995 * 109.47664 * 177.70386 * 5 3 2 36 36 H 1.09246 * 109.42852 * 190.18688 * 6 3 2 37 37 H 1.09233 * 109.44259 * 71.02473 * 6 3 2 38 38 H 1.08692 * 110.46026 * 298.91299 * 7 6 3 39 39 H 1.07997 * 119.97293 * 0.02760 * 10 9 8 40 40 H 1.07996 * 119.70382 * 180.28207 * 11 10 9 41 41 H 1.07999 * 119.72648 * 179.72188 * 12 11 10 42 42 H 1.08000 * 120.03257 * 179.97438 * 13 12 11 43 43 H 0.97000 * 120.00197 * 179.97438 * 18 17 15 44 44 H 1.09230 * 109.38549 * 60.44836 * 23 7 6 45 45 H 1.09241 * 109.37213 * 179.50140 * 23 7 6 46 46 H 1.08996 * 109.46696 * 182.34741 * 25 24 2 47 47 H 1.08994 * 109.47344 * 302.34612 * 25 24 2 48 48 H 1.09000 * 109.46947 * 62.35083 * 25 24 2 49 49 H 1.09003 * 109.47439 * 294.41636 * 26 24 2 50 50 H 1.09004 * 109.47390 * 54.41906 * 26 24 2 51 51 H 1.09004 * 109.47122 * 174.41580 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0155 1.3409 0.0000 4 6 1.4141 2.1845 1.1304 5 6 1.6285 2.0198 -1.3327 6 6 3.5387 1.3628 0.1017 7 6 4.0079 0.4682 1.2487 8 8 5.4389 0.4909 1.3093 9 6 6.0087 0.2207 2.5102 10 6 5.2246 -0.1680 3.5830 11 6 5.8109 -0.4474 4.8041 12 6 7.1840 -0.3311 4.9715 13 6 7.9793 0.0552 3.9317 14 6 7.4069 0.3395 2.6780 15 6 8.2223 0.7391 1.5972 16 1 7.8942 0.5706 0.5822 17 6 9.4556 1.3536 1.8411 18 7 9.7193 1.8443 3.0252 19 14 10.7254 1.4736 0.4763 20 1 10.5251 2.7378 -0.2764 21 1 12.0883 1.4589 1.0657 22 1 10.5722 0.3191 -0.4452 23 6 3.5386 -0.9603 0.9743 24 6 2.0157 -1.0113 0.8803 25 6 1.6305 -2.3984 0.3194 26 6 1.4118 -0.9069 2.2859 27 1 -0.3633 0.1968 1.0087 28 1 -0.3634 0.7751 -0.6747 29 1 -0.3633 -0.9719 -0.3338 30 1 1.7687 3.2116 1.0453 31 1 0.3268 2.1681 1.0568 32 1 1.7195 1.7732 2.0925 33 1 2.0733 1.4709 -2.1628 34 1 0.5436 2.0213 -1.4381 35 1 1.9954 3.0461 -1.3377 36 1 3.8764 2.3865 0.2790 37 1 3.9709 1.0066 -0.8362 38 1 3.6094 0.8237 2.1953 39 1 4.1548 -0.2574 3.4650 40 1 5.1944 -0.7545 5.6359 41 1 7.6267 -0.5484 5.9324 42 1 9.0466 0.1434 4.0712 43 1 10.5744 2.2699 3.1944 44 1 3.9728 -1.3105 0.0352 45 1 3.8748 -1.6137 1.7826 46 1 1.9967 -3.1758 0.9898 47 1 0.5459 -2.4694 0.2389 48 1 2.0773 -2.5285 -0.6663 49 1 1.7159 0.0347 2.7431 50 1 0.3245 -0.9434 2.2179 51 1 1.7657 -1.7380 2.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = -16.378021 kcal Electronic energy + Delta-G solvation = -28607.260430 eV Core-core repulsion = 25085.463600 eV Total energy + Delta-G solvation = -3521.796830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.50774 -38.43155 -36.13491 -35.16284 -33.55043 -32.56856 -29.70951 -29.13923 -28.33673 -27.73578 -26.68242 -26.14577 -25.94630 -25.03795 -22.15348 -20.83877 -20.53671 -19.94204 -17.76122 -17.26596 -16.51796 -15.99300 -15.81390 -15.14284 -14.62437 -14.42010 -14.19504 -14.10734 -14.06416 -13.47123 -13.23269 -12.89365 -12.82094 -12.80367 -12.70564 -12.38094 -12.22747 -11.96899 -11.73121 -11.63172 -11.52967 -11.43347 -11.36111 -11.28724 -11.13888 -11.01613 -10.84713 -10.63071 -10.60484 -10.48174 -10.36340 -10.08329 -9.64303 -9.57014 -9.30606 -9.11144 -7.92218 -7.42297 -6.94686 -6.63575 -4.18636 2.80219 3.04525 3.12450 3.17185 3.25747 3.71280 4.01011 4.15937 4.69901 4.75977 4.81278 4.92263 5.01003 5.11344 5.31530 5.33945 5.42694 5.44653 5.52300 5.59214 5.62952 5.67387 5.69918 5.71690 5.74156 5.82405 5.86251 5.89077 5.95142 6.03267 6.09386 6.14039 6.17143 6.18551 6.23828 6.26631 6.35538 6.38567 6.45020 6.51019 6.61871 7.01408 7.16482 7.29895 7.36654 7.43267 7.60343 7.79928 7.83643 8.12265 8.27859 8.48526 8.77401 8.92149 9.15043 10.27737 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.004125 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.920456 B = 6786.955489 C = 7704.570097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.572 5.572 3 C 0.148 3.852 4 C -0.182 4.182 5 C -0.142 4.142 6 C -0.105 4.105 7 C 0.091 3.909 8 O -0.302 6.302 9 C 0.015 3.985 10 C -0.179 4.179 11 C -0.215 4.215 12 C -0.128 4.128 13 C -0.147 4.147 14 C 0.097 3.903 15 C -0.444 4.444 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.131 4.131 24 C 0.148 3.852 25 C -0.141 4.141 26 C -0.184 4.184 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.279 0.721 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.287 -2.032 -5.229 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.297 5.297 3 C 0.059 3.941 4 C -0.241 4.241 5 C -0.199 4.199 6 C -0.143 4.143 7 C 0.034 3.966 8 O -0.217 6.217 9 C -0.029 4.029 10 C -0.198 4.198 11 C -0.235 4.235 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.095 3.905 15 C -0.474 4.474 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.169 4.169 24 C 0.058 3.942 25 C -0.199 4.199 26 C -0.243 4.243 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.142 0.858 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.856 -1.983 -5.649 16.017 hybrid contribution 0.177 0.368 0.524 0.665 sum -14.679 -1.615 -5.125 15.631 Atomic orbital electron populations 1.22230 0.86462 1.02058 0.99912 1.56479 1.06158 1.08712 1.58335 1.20360 0.93390 0.85733 0.94653 1.22725 1.00871 1.00808 0.99743 1.22327 1.01033 0.99818 0.96761 1.21621 0.92878 1.00517 0.99278 1.21963 0.81937 0.94559 0.98143 1.86067 1.18278 1.86805 1.30538 1.19173 0.92490 1.07227 0.84033 1.20625 0.97228 1.07504 0.94435 1.20118 0.94688 1.12497 0.96200 1.20371 0.93717 1.02777 0.97767 1.20899 0.99678 1.03375 0.92687 1.17067 0.87502 0.92140 0.93838 1.19409 1.00392 1.33150 0.94475 0.90076 1.25880 0.98841 0.93209 0.96418 1.69833 1.23116 1.27173 1.22543 0.86325 0.79345 0.79656 0.81474 1.19592 1.20247 1.18494 1.22153 0.93111 0.98211 1.03465 1.20355 0.93761 0.90739 0.89310 1.22299 1.00952 0.95255 1.01379 1.22714 1.00987 1.02436 0.98116 0.95394 0.91491 0.91768 0.91989 0.92587 0.92486 0.91959 0.92680 0.92322 0.90612 0.90476 0.91817 0.88737 0.89611 0.89505 0.85815 0.91063 0.90666 0.90630 0.92430 0.92850 0.92073 0.92538 0.92452 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 7.54 60.06 0.45 0.84 16 2 N -0.57 -6.80 3.54 -212.78 -0.75 -7.55 16 3 C 0.15 1.82 0.68 -131.94 -0.09 1.73 16 4 C -0.18 -2.13 7.75 37.33 0.29 -1.84 16 5 C -0.14 -1.49 8.21 37.94 0.31 -1.18 16 6 C -0.11 -1.61 4.31 -26.98 -0.12 -1.72 16 7 C 0.09 1.63 1.94 -26.90 -0.05 1.57 16 8 O -0.30 -6.95 9.08 -18.63 -0.17 -7.12 16 9 C 0.02 0.38 6.65 -38.34 -0.25 0.12 16 10 C -0.18 -4.09 8.32 -39.48 -0.33 -4.41 16 11 C -0.22 -4.92 10.04 -39.34 -0.39 -5.32 16 12 C -0.13 -3.07 9.97 -40.00 -0.40 -3.47 16 13 C -0.15 -3.88 8.64 -39.27 -0.34 -4.22 16 14 C 0.10 2.66 5.58 -106.68 -0.60 2.06 16 15 C -0.44 -12.17 8.72 -37.84 -0.33 -12.50 16 16 H 0.08 2.21 7.65 -52.48 -0.40 1.81 16 17 C 0.07 1.87 5.17 -17.33 -0.09 1.78 16 18 N -0.80 -21.04 10.90 55.55 0.61 -20.43 16 19 Si 0.91 19.24 29.59 -169.99 -5.03 14.21 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.13 -2.08 3.98 -26.99 -0.11 -2.18 16 24 C 0.15 1.87 0.69 -131.94 -0.09 1.78 16 25 C -0.14 -1.57 8.17 37.95 0.31 -1.26 16 26 C -0.18 -2.23 7.68 37.33 0.29 -1.94 16 27 H 0.03 0.27 5.62 -51.93 -0.29 -0.02 16 28 H 0.07 0.59 5.80 -51.93 -0.30 0.29 16 29 H 0.06 0.58 6.36 -51.93 -0.33 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.57 6.66 -51.93 -0.35 0.23 16 32 H 0.06 0.74 5.14 -51.93 -0.27 0.48 16 33 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.05 0.51 6.09 -51.93 -0.32 0.19 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.18 8.08 -51.79 -0.42 0.77 16 37 H 0.08 1.21 8.05 -51.80 -0.42 0.80 16 38 H 0.06 1.17 4.30 -52.10 -0.22 0.95 16 39 H 0.09 1.92 5.52 -52.49 -0.29 1.63 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.12 3.35 6.13 -52.49 -0.32 3.03 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.07 1.24 8.05 -51.80 -0.42 0.82 16 45 H 0.08 1.28 7.03 -51.79 -0.36 0.92 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.52 6.37 -51.93 -0.33 0.19 16 48 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 49 H 0.06 0.75 5.15 -51.93 -0.27 0.48 16 50 H 0.06 0.61 6.22 -51.93 -0.32 0.29 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -28.05 369.91 -9.45 -37.50 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.14 Total: 8.00 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -1.54 Total: -30.18 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: -0.15 Total: -27.99 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.17 Total: -7.12 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.05 -9.45 -37.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.120 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds