Wall clock time and date at job start Tue Mar 31 2020 11:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44802 * 112.17716 * 2 1 4 4 C 1.53333 * 111.18577 * 52.24568 * 3 2 1 5 5 C 1.54491 * 108.20181 * 294.75862 * 3 2 1 6 6 C 1.52675 * 112.94590 * 175.85209 * 3 2 1 7 7 C 1.52840 * 110.35736 * 310.59258 * 6 3 2 8 8 O 1.43241 * 109.21773 * 179.14365 * 7 6 3 9 9 C 1.35644 * 116.99889 * 154.68032 * 8 7 6 10 10 C 1.38444 * 120.26754 * 5.30805 * 9 8 7 11 11 C 1.38311 * 120.05039 * 179.75207 * 10 9 8 12 12 C 1.38816 * 120.58853 * 0.55636 * 11 10 9 13 13 C 1.36491 * 120.54140 * 359.70044 * 12 11 10 14 14 C 1.40725 * 119.92728 * 0.02562 * 13 12 11 15 15 C 1.41158 * 120.28517 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99468 * 154.90721 * 15 14 13 17 17 C 1.39933 * 120.00038 * 334.90503 * 15 14 13 18 18 N 1.30859 * 120.00023 * 343.79352 * 17 15 14 19 19 Si 1.86799 * 119.99842 * 163.80176 * 17 15 14 20 20 H 1.48490 * 109.47474 * 89.99637 * 19 17 15 21 21 H 1.48500 * 109.47049 * 209.99962 * 19 17 15 22 22 H 1.48505 * 109.46999 * 329.99339 * 19 17 15 23 23 C 1.52837 * 108.54622 * 60.15341 * 7 6 3 24 24 C 1.44796 * 112.18433 * 138.96000 * 2 1 3 25 25 C 1.54501 * 108.18917 * 65.33027 * 24 2 1 26 26 C 1.53336 * 111.16632 * 307.87645 * 24 2 1 27 27 H 1.09004 * 109.46648 * 281.04012 * 1 2 3 28 28 H 1.08996 * 109.47321 * 41.04138 * 1 2 3 29 29 H 1.09002 * 109.47131 * 161.04305 * 1 2 3 30 30 H 1.08997 * 109.46893 * 185.53311 * 4 3 2 31 31 H 1.08993 * 109.46736 * 305.53610 * 4 3 2 32 32 H 1.08996 * 109.46664 * 65.53454 * 4 3 2 33 33 H 1.09003 * 109.47729 * 297.70928 * 5 3 2 34 34 H 1.09007 * 109.46992 * 57.70423 * 5 3 2 35 35 H 1.08995 * 109.47664 * 177.70386 * 5 3 2 36 36 H 1.09246 * 109.42852 * 190.18688 * 6 3 2 37 37 H 1.09233 * 109.44259 * 71.02473 * 6 3 2 38 38 H 1.08692 * 110.46026 * 298.91299 * 7 6 3 39 39 H 1.07997 * 119.97293 * 0.02760 * 10 9 8 40 40 H 1.07996 * 119.70382 * 180.28207 * 11 10 9 41 41 H 1.07999 * 119.72648 * 179.72188 * 12 11 10 42 42 H 1.08000 * 120.03257 * 179.97438 * 13 12 11 43 43 H 0.97000 * 120.00197 * 179.97438 * 18 17 15 44 44 H 1.09230 * 109.38549 * 60.44836 * 23 7 6 45 45 H 1.09241 * 109.37213 * 179.50140 * 23 7 6 46 46 H 1.08996 * 109.46696 * 182.34741 * 25 24 2 47 47 H 1.08994 * 109.47344 * 302.34612 * 25 24 2 48 48 H 1.09000 * 109.46947 * 62.35083 * 25 24 2 49 49 H 1.09003 * 109.47439 * 294.41636 * 26 24 2 50 50 H 1.09004 * 109.47390 * 54.41906 * 26 24 2 51 51 H 1.09004 * 109.47122 * 174.41580 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0155 1.3409 0.0000 4 6 1.4141 2.1845 1.1304 5 6 1.6285 2.0198 -1.3327 6 6 3.5387 1.3628 0.1017 7 6 4.0079 0.4682 1.2487 8 8 5.4389 0.4909 1.3093 9 6 6.0087 0.2207 2.5102 10 6 5.2246 -0.1680 3.5830 11 6 5.8109 -0.4474 4.8041 12 6 7.1840 -0.3311 4.9715 13 6 7.9793 0.0552 3.9317 14 6 7.4069 0.3395 2.6780 15 6 8.2223 0.7391 1.5972 16 1 7.8942 0.5706 0.5822 17 6 9.4556 1.3536 1.8411 18 7 9.7193 1.8443 3.0252 19 14 10.7254 1.4736 0.4763 20 1 10.5251 2.7378 -0.2764 21 1 12.0883 1.4589 1.0657 22 1 10.5722 0.3191 -0.4452 23 6 3.5386 -0.9603 0.9743 24 6 2.0157 -1.0113 0.8803 25 6 1.6305 -2.3984 0.3194 26 6 1.4118 -0.9069 2.2859 27 1 -0.3633 0.1968 1.0087 28 1 -0.3634 0.7751 -0.6747 29 1 -0.3633 -0.9719 -0.3338 30 1 1.7687 3.2116 1.0453 31 1 0.3268 2.1681 1.0568 32 1 1.7195 1.7732 2.0925 33 1 2.0733 1.4709 -2.1628 34 1 0.5436 2.0213 -1.4381 35 1 1.9954 3.0461 -1.3377 36 1 3.8764 2.3865 0.2790 37 1 3.9709 1.0066 -0.8362 38 1 3.6094 0.8237 2.1953 39 1 4.1548 -0.2574 3.4650 40 1 5.1944 -0.7545 5.6359 41 1 7.6267 -0.5484 5.9324 42 1 9.0466 0.1434 4.0712 43 1 10.5744 2.2699 3.1944 44 1 3.9728 -1.3105 0.0352 45 1 3.8748 -1.6137 1.7826 46 1 1.9967 -3.1758 0.9898 47 1 0.5459 -2.4694 0.2389 48 1 2.0773 -2.5285 -0.6663 49 1 1.7159 0.0347 2.7431 50 1 0.3245 -0.9434 2.2179 51 1 1.7657 -1.7380 2.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:02 Heat of formation + Delta-G solvation = -30.116491 kcal Electronic energy + Delta-G solvation = -28607.856175 eV Core-core repulsion = 25085.463600 eV Total energy + Delta-G solvation = -3522.392575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69566 -40.09905 -37.89729 -36.16874 -35.48872 -33.84907 -31.55889 -30.60383 -29.82817 -28.66477 -27.59096 -27.38177 -27.09275 -26.75519 -23.72215 -22.59177 -21.63919 -21.58303 -19.44648 -18.73259 -18.14050 -17.25807 -17.04601 -16.72984 -15.98896 -15.92133 -15.77609 -15.38284 -15.25268 -14.69428 -14.55583 -14.44285 -14.21782 -14.10308 -13.79144 -13.69520 -13.40331 -13.28197 -13.16769 -12.95074 -12.76113 -12.68652 -12.60356 -12.46529 -12.39678 -12.30804 -12.22209 -12.14578 -11.95780 -11.82541 -11.64747 -11.56186 -11.28657 -11.14122 -11.03142 -10.90521 -9.38672 -8.85981 -8.83107 -8.55174 -6.21708 0.93315 1.10606 1.36950 1.47619 1.53188 2.22860 2.61568 2.76195 2.78168 3.65518 3.66901 3.75741 3.87770 3.91044 4.00667 4.12131 4.29358 4.33461 4.35757 4.41040 4.49869 4.51968 4.64864 4.69017 4.71746 4.75523 4.78962 4.84868 4.87446 4.88996 4.92946 5.00404 5.01821 5.06530 5.07588 5.13856 5.15307 5.15937 5.22640 5.29011 5.34784 5.41645 5.44861 5.49110 5.50944 5.87853 5.90556 6.16345 6.31850 6.40685 6.54087 6.62155 6.81444 6.93192 7.25874 8.37637 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.004125 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.920456 B = 6786.955489 C = 7704.570097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.579 5.579 3 C 0.151 3.849 4 C -0.179 4.179 5 C -0.136 4.136 6 C -0.102 4.102 7 C 0.088 3.912 8 O -0.327 6.327 9 C 0.008 3.992 10 C -0.179 4.179 11 C -0.208 4.208 12 C -0.136 4.136 13 C -0.167 4.167 14 C 0.058 3.942 15 C -0.482 4.482 16 H 0.066 0.934 17 C 0.034 3.966 18 N -0.830 5.830 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.123 4.123 24 C 0.151 3.849 25 C -0.136 4.136 26 C -0.180 4.180 27 H 0.032 0.968 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.287 0.713 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.042 0.958 50 H 0.077 0.923 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.699 -2.264 -5.541 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.304 5.304 3 C 0.061 3.939 4 C -0.238 4.238 5 C -0.194 4.194 6 C -0.140 4.140 7 C 0.031 3.969 8 O -0.242 6.242 9 C -0.037 4.037 10 C -0.198 4.198 11 C -0.227 4.227 12 C -0.154 4.154 13 C -0.187 4.187 14 C 0.056 3.944 15 C -0.512 4.512 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.457 5.457 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.186 1.186 22 H -0.187 1.187 23 C -0.161 4.161 24 C 0.061 3.939 25 C -0.194 4.194 26 C -0.239 4.239 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.296 -2.218 -5.952 18.425 hybrid contribution 0.802 0.421 0.677 1.130 sum -16.494 -1.798 -5.275 17.410 Atomic orbital electron populations 1.22345 0.84453 1.03333 1.00594 1.56528 1.07691 1.08097 1.58040 1.20323 0.90843 0.86579 0.96123 1.22693 1.02095 1.00502 0.98490 1.22282 1.02319 0.99634 0.95161 1.21656 0.95575 0.99197 0.97589 1.22259 0.79204 0.96525 0.98881 1.86029 1.21443 1.86748 1.30024 1.19343 0.92319 1.06785 0.85232 1.20910 0.98406 1.06583 0.93918 1.20566 0.94607 1.10445 0.97061 1.20662 0.94317 1.02270 0.98174 1.20885 0.99390 1.04914 0.93495 1.17462 0.89010 0.93437 0.94519 1.19498 1.02297 1.35472 0.93907 0.91568 1.26665 1.00117 0.92179 0.98981 1.69873 1.23982 1.27618 1.24257 0.85263 0.76980 0.79557 0.78250 1.18872 1.18648 1.18661 1.22064 0.95855 0.96207 1.02011 1.20288 0.91204 0.92110 0.90288 1.22253 1.02242 0.94033 1.00861 1.22682 1.02238 1.01616 0.97350 0.94943 0.90164 0.90601 0.91925 0.90505 0.94061 0.92582 0.90605 0.91937 0.91591 0.91523 0.92349 0.86263 0.86089 0.86970 0.87357 0.90264 0.92033 0.92132 0.92330 0.90760 0.92733 0.93886 0.90375 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 7.54 127.69 0.96 1.57 16 2 N -0.58 -12.52 3.54 -827.12 -2.93 -15.45 16 3 C 0.15 3.49 0.68 4.43 0.00 3.49 16 4 C -0.18 -3.85 7.75 72.09 0.56 -3.29 16 5 C -0.14 -2.58 8.21 72.49 0.60 -1.99 16 6 C -0.10 -3.18 4.31 30.43 0.13 -3.05 16 7 C 0.09 3.20 1.94 30.49 0.06 3.26 16 8 O -0.33 -15.79 9.08 -89.58 -0.81 -16.60 16 9 C 0.01 0.40 6.65 23.08 0.15 0.56 16 10 C -0.18 -8.18 8.32 22.34 0.19 -7.99 16 11 C -0.21 -9.22 10.04 22.43 0.23 -9.00 16 12 C -0.14 -6.51 9.97 22.00 0.22 -6.29 16 13 C -0.17 -9.16 8.64 22.47 0.19 -8.96 16 14 C 0.06 3.33 5.58 -21.20 -0.12 3.21 16 15 C -0.48 -27.83 8.72 23.40 0.20 -27.62 16 16 H 0.07 3.86 7.65 -2.91 -0.02 3.83 16 17 C 0.03 1.80 5.17 85.25 0.44 2.25 16 18 N -0.83 -45.12 10.90 21.83 0.24 -44.88 16 19 Si 0.98 40.55 29.59 68.60 2.03 42.58 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 C -0.12 -3.93 3.98 30.43 0.12 -3.81 16 24 C 0.15 3.58 0.69 4.43 0.00 3.59 16 25 C -0.14 -2.75 8.17 72.49 0.59 -2.16 16 26 C -0.18 -3.98 7.68 72.09 0.55 -3.43 16 27 H 0.03 0.49 5.62 -2.39 -0.01 0.48 16 28 H 0.08 1.07 5.80 -2.39 -0.01 1.05 16 29 H 0.08 1.04 6.36 -2.39 -0.02 1.03 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.33 6.66 -2.39 -0.02 1.32 16 32 H 0.04 1.02 5.14 -2.39 -0.01 1.01 16 33 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 34 H 0.08 1.13 6.09 -2.38 -0.01 1.12 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.07 2.14 8.08 -2.26 -0.02 2.12 16 37 H 0.07 2.18 8.05 -2.26 -0.02 2.16 16 38 H 0.06 2.18 4.30 -2.55 -0.01 2.17 16 39 H 0.12 4.75 5.52 -2.91 -0.02 4.73 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.11 6.16 6.13 -2.91 -0.02 6.14 16 43 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 44 H 0.06 2.10 8.05 -2.27 -0.02 2.08 16 45 H 0.06 2.08 7.03 -2.26 -0.02 2.07 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 1.20 6.37 -2.39 -0.02 1.18 16 48 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 49 H 0.04 1.07 5.15 -2.39 -0.01 1.06 16 50 H 0.08 1.40 6.22 -2.38 -0.01 1.39 16 51 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -63.42 369.91 4.53 -58.89 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.92 Total: 35.15 kcal Atomic # 6 Polarization: -64.77 SS G_CDS: 5.08 Total: -59.69 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -2.69 Total: -60.33 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.81 Total: -16.60 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -63.42 4.53 -58.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.774 kcal (2) G-P(sol) polarization free energy of solvation -63.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds