Wall clock time and date at job start Tue Mar 31 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47260 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46833 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47308 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47588 * 179.97438 * 6 5 4 8 8 C 1.38263 * 119.94516 * 269.73270 * 7 6 5 9 9 C 1.38146 * 120.05289 * 179.72402 * 8 7 6 10 10 C 1.38730 * 119.94424 * 0.52365 * 9 8 7 11 11 O 1.35898 * 120.05634 * 179.73210 * 10 9 8 12 12 C 1.42903 * 116.99798 * 354.53171 * 11 10 9 13 13 H 1.08997 * 110.64627 * 326.90573 * 12 11 10 14 14 C 1.55157 * 110.71837 * 203.76222 * 12 11 10 15 15 C 1.54913 * 101.58068 * 206.13729 * 14 12 11 16 16 N 1.47424 * 104.83047 * 37.01262 * 15 14 12 17 17 C 1.36940 * 125.64631 * 155.90894 * 16 15 14 18 18 H 1.08000 * 119.99875 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99994 * 359.97213 * 17 16 15 20 20 N 1.31611 * 119.99901 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99688 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46981 * 90.00174 * 21 19 17 23 23 H 1.48498 * 109.46897 * 209.99775 * 21 19 17 24 24 H 1.48497 * 109.47065 * 330.00034 * 21 19 17 25 25 C 1.47024 * 108.70398 * 335.86771 * 16 15 14 26 26 C 1.38733 * 119.88664 * 359.74459 * 10 9 8 27 27 C 1.38138 * 119.94556 * 0.02562 * 26 10 9 28 28 H 1.09005 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47513 * 299.99462 * 1 2 3 30 30 H 1.09002 * 109.47324 * 59.99776 * 1 2 3 31 31 H 1.09004 * 109.47101 * 240.00200 * 2 1 3 32 32 H 1.09002 * 109.47324 * 120.00224 * 2 1 3 33 33 H 1.09004 * 109.46900 * 60.00077 * 3 2 1 34 34 H 1.09002 * 109.47135 * 300.00339 * 3 2 1 35 35 H 1.08993 * 109.47513 * 300.00201 * 4 3 2 36 36 H 1.08993 * 109.47325 * 60.00719 * 4 3 2 37 37 H 1.09003 * 109.47488 * 300.00181 * 5 4 3 38 38 H 1.08994 * 109.47513 * 59.99807 * 5 4 3 39 39 H 1.09002 * 109.47200 * 300.00007 * 6 5 4 40 40 H 1.09004 * 109.46955 * 59.99819 * 6 5 4 41 41 H 1.08003 * 119.97598 * 359.97067 * 8 7 6 42 42 H 1.08004 * 120.02507 * 180.24864 * 9 8 7 43 43 H 1.08997 * 111.00731 * 324.20802 * 14 12 11 44 44 H 1.08999 * 111.00164 * 88.03222 * 14 12 11 45 45 H 1.09000 * 110.36558 * 155.84691 * 15 14 12 46 46 H 1.08999 * 110.37000 * 278.17604 * 15 14 12 47 47 H 0.97004 * 119.99797 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.88478 * 241.63920 * 25 16 15 49 49 H 1.09008 * 109.87861 * 120.47608 * 25 16 15 50 50 H 1.08001 * 120.02535 * 179.97438 * 26 10 9 51 51 H 1.07999 * 119.97049 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0799 2.8850 0.0013 6 6 5.6099 2.8850 0.0013 7 6 6.1123 4.3058 0.0013 8 6 6.3477 4.9547 -1.1967 9 6 6.8028 6.2590 -1.1994 10 6 7.0340 6.9142 0.0014 11 8 7.4869 8.1955 0.0015 12 6 7.8179 8.7666 -1.2660 13 1 8.2108 8.0053 -1.9398 14 6 8.8338 9.9270 -1.0967 15 6 8.5321 10.7895 -2.3476 16 7 7.0705 10.7051 -2.5205 17 6 6.2888 11.6254 -3.1665 18 1 5.2224 11.4715 -3.2402 19 6 6.8672 12.7562 -3.7267 20 7 8.1668 12.9436 -3.6373 21 14 5.8008 14.0119 -4.6073 22 1 5.3359 15.0347 -3.6360 23 1 6.5923 14.6697 -5.6778 24 1 4.6264 13.3298 -5.2079 25 6 6.5912 9.4688 -1.8853 26 6 6.8024 6.2590 1.2021 27 6 6.3428 4.9563 1.1994 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9287 0.8908 36 1 3.9337 0.9286 -0.8891 37 1 3.7170 3.3991 -0.8887 38 1 3.7162 3.3986 0.8912 39 1 5.9733 2.3708 0.8911 40 1 5.9733 2.3716 -0.8890 41 1 6.1718 4.4427 -2.1313 42 1 6.9826 6.7667 -2.1355 43 1 8.6400 10.4856 -0.1810 44 1 9.8583 9.5551 -1.1157 45 1 8.8350 11.8227 -2.1780 46 1 9.0415 10.3824 -3.2210 47 1 8.5709 13.7340 -4.0284 48 1 6.1318 8.8220 -2.6328 49 1 5.8684 9.7090 -1.1054 50 1 6.9820 6.7668 2.1383 51 1 6.1619 4.4460 2.1339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231252715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:13 Heat of formation + Delta-G solvation = -21.215899 kcal Electronic energy + Delta-G solvation = -25534.786887 eV Core-core repulsion = 22012.780271 eV Total energy + Delta-G solvation = -3522.006616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.12033 -38.27062 -36.81266 -36.07687 -33.88810 -32.33318 -30.95566 -30.75203 -29.30427 -27.77127 -27.21829 -24.76899 -24.20662 -22.84112 -21.89070 -21.28767 -20.87727 -20.25654 -19.92425 -17.99017 -17.04500 -16.29748 -15.71831 -15.48632 -15.17069 -14.73225 -14.62969 -14.41538 -14.17947 -13.88771 -13.79067 -13.42103 -13.34897 -13.03221 -12.94497 -12.63147 -12.45562 -12.01642 -11.95013 -11.76651 -11.67514 -11.52080 -11.43312 -11.19685 -11.06551 -11.00278 -10.86956 -10.77759 -10.68576 -10.62086 -10.38564 -10.19720 -10.01574 -9.82155 -9.62513 -8.91582 -8.69805 -7.87399 -6.89978 -5.69902 -3.12143 1.42799 1.52022 3.38577 3.43020 3.45234 3.52809 3.81903 4.38263 4.46339 4.55914 4.70956 4.76102 4.81987 4.92818 4.99172 5.08906 5.14487 5.20758 5.23468 5.32022 5.39821 5.42382 5.43716 5.45698 5.50130 5.54717 5.59130 5.62884 5.66764 5.68014 5.72545 5.80378 5.80709 5.87492 5.97860 6.05226 6.11640 6.14885 6.24832 6.37573 6.39782 6.47946 6.48995 6.62297 6.63620 6.68129 6.95929 7.41620 7.57738 7.73417 7.81755 8.29707 9.16747 9.77033 10.40391 11.34466 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.002091 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.445197 B =13388.007357 C =14763.973633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.132 4.132 8 C -0.076 4.076 9 C -0.205 4.205 10 C 0.138 3.862 11 O -0.305 6.305 12 C 0.069 3.931 13 H 0.077 0.923 14 C -0.136 4.136 15 C 0.153 3.847 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.917 3.083 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.120 3.880 26 C -0.157 4.157 27 C -0.080 4.080 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.016 0.984 47 H 0.253 0.747 48 H 0.025 0.975 49 H 0.035 0.965 50 H 0.127 0.873 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 -24.086 8.946 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.109 4.109 7 C -0.132 4.132 8 C -0.094 4.094 9 C -0.224 4.224 10 C 0.091 3.909 11 O -0.218 6.218 12 C 0.013 3.987 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.006 4.006 26 C -0.176 4.176 27 C -0.098 4.098 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.149 0.851 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.131 0.869 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.145 0.855 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.179 -23.745 8.977 26.127 hybrid contribution -0.558 0.591 -0.757 1.111 sum -6.737 -23.154 8.220 25.477 Atomic orbital electron populations 1.21787 0.96002 1.01477 1.01873 1.21542 0.95794 0.97097 1.01861 1.21640 0.95547 0.96572 1.02192 1.21625 0.95271 0.96932 1.01923 1.21612 0.94691 0.96441 1.02544 1.20491 0.95329 0.92694 1.02394 1.19690 1.03755 0.96702 0.93075 1.20793 0.97328 0.93805 0.97501 1.21402 1.06589 0.96650 0.97752 1.19133 0.93440 0.84361 0.93922 1.86159 1.78515 1.23880 1.33219 1.23678 0.97263 0.95070 0.82712 0.90512 1.23209 0.96338 0.95494 1.02456 1.21997 0.83939 1.00894 0.90378 1.44381 1.03635 1.20056 1.64761 1.19087 0.90484 0.98490 1.27084 0.90370 1.24803 0.96083 0.98589 1.01143 1.69757 1.08648 1.28709 1.50027 0.86033 0.79025 0.81251 0.78953 1.21501 1.21581 1.20695 1.21683 0.94151 0.89373 0.95439 1.20413 1.05740 0.95076 0.96337 1.20746 0.97966 0.93614 0.97494 0.92914 0.92768 0.92737 0.92142 0.92172 0.92029 0.91974 0.92107 0.92072 0.91823 0.91867 0.91423 0.91418 0.86196 0.85077 0.90806 0.91544 0.86859 0.96566 0.93600 0.95684 0.94705 0.85479 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16 4 C -0.12 -0.81 5.22 -26.73 -0.14 -0.95 16 5 C -0.12 -0.93 5.20 -26.73 -0.14 -1.07 16 6 C -0.07 -0.61 5.34 -27.88 -0.15 -0.76 16 7 C -0.13 -1.49 5.13 -104.60 -0.54 -2.02 16 8 C -0.08 -0.95 9.69 -39.61 -0.38 -1.33 16 9 C -0.21 -3.02 8.90 -39.43 -0.35 -3.37 16 10 C 0.14 2.18 6.67 -39.22 -0.26 1.92 16 11 O -0.30 -5.51 9.86 -19.42 -0.19 -5.70 16 12 C 0.07 1.30 2.74 -24.90 -0.07 1.23 16 13 H 0.08 1.34 6.26 -51.93 -0.33 1.02 16 14 C -0.14 -2.68 6.81 -24.58 -0.17 -2.85 16 15 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 16 N -0.60 -15.70 3.39 -170.07 -0.58 -16.27 16 17 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 21 Si 0.92 22.11 29.55 -169.99 -5.02 17.08 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.12 2.63 6.80 -3.06 -0.02 2.61 16 26 C -0.16 -2.14 9.99 -39.44 -0.39 -2.53 16 27 C -0.08 -0.92 9.69 -39.61 -0.38 -1.31 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.13 1.97 5.62 -52.48 -0.30 1.67 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.11 3.08 5.88 -51.93 -0.31 2.77 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.03 0.54 7.80 -51.93 -0.41 0.13 16 49 H 0.04 0.80 8.06 -51.92 -0.42 0.38 16 50 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -29.87 403.20 -11.67 -41.54 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -9.32 Total: -0.52 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.19 Total: -15.99 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.02 Total: -42.49 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.19 Total: -5.70 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.87 -11.67 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231252715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.322 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds