Wall clock time and date at job start Tue Mar 31 2020 12:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47260 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46833 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47308 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47588 * 179.97438 * 6 5 4 8 8 C 1.38263 * 119.94516 * 269.73270 * 7 6 5 9 9 C 1.38146 * 120.05289 * 179.72402 * 8 7 6 10 10 C 1.38730 * 119.94424 * 0.52365 * 9 8 7 11 11 O 1.35898 * 120.05634 * 179.73210 * 10 9 8 12 12 C 1.42903 * 116.99798 * 354.53171 * 11 10 9 13 13 H 1.08997 * 110.64627 * 326.90573 * 12 11 10 14 14 C 1.55157 * 110.71837 * 203.76222 * 12 11 10 15 15 C 1.54913 * 101.58068 * 206.13729 * 14 12 11 16 16 N 1.47424 * 104.83047 * 37.01262 * 15 14 12 17 17 C 1.36940 * 125.64631 * 155.90894 * 16 15 14 18 18 H 1.08000 * 119.99875 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99994 * 359.97213 * 17 16 15 20 20 N 1.31611 * 119.99901 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99688 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46981 * 90.00174 * 21 19 17 23 23 H 1.48498 * 109.46897 * 209.99775 * 21 19 17 24 24 H 1.48497 * 109.47065 * 330.00034 * 21 19 17 25 25 C 1.47024 * 108.70398 * 335.86771 * 16 15 14 26 26 C 1.38733 * 119.88664 * 359.74459 * 10 9 8 27 27 C 1.38138 * 119.94556 * 0.02562 * 26 10 9 28 28 H 1.09005 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47513 * 299.99462 * 1 2 3 30 30 H 1.09002 * 109.47324 * 59.99776 * 1 2 3 31 31 H 1.09004 * 109.47101 * 240.00200 * 2 1 3 32 32 H 1.09002 * 109.47324 * 120.00224 * 2 1 3 33 33 H 1.09004 * 109.46900 * 60.00077 * 3 2 1 34 34 H 1.09002 * 109.47135 * 300.00339 * 3 2 1 35 35 H 1.08993 * 109.47513 * 300.00201 * 4 3 2 36 36 H 1.08993 * 109.47325 * 60.00719 * 4 3 2 37 37 H 1.09003 * 109.47488 * 300.00181 * 5 4 3 38 38 H 1.08994 * 109.47513 * 59.99807 * 5 4 3 39 39 H 1.09002 * 109.47200 * 300.00007 * 6 5 4 40 40 H 1.09004 * 109.46955 * 59.99819 * 6 5 4 41 41 H 1.08003 * 119.97598 * 359.97067 * 8 7 6 42 42 H 1.08004 * 120.02507 * 180.24864 * 9 8 7 43 43 H 1.08997 * 111.00731 * 324.20802 * 14 12 11 44 44 H 1.08999 * 111.00164 * 88.03222 * 14 12 11 45 45 H 1.09000 * 110.36558 * 155.84691 * 15 14 12 46 46 H 1.08999 * 110.37000 * 278.17604 * 15 14 12 47 47 H 0.97004 * 119.99797 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.88478 * 241.63920 * 25 16 15 49 49 H 1.09008 * 109.87861 * 120.47608 * 25 16 15 50 50 H 1.08001 * 120.02535 * 179.97438 * 26 10 9 51 51 H 1.07999 * 119.97049 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0799 2.8850 0.0013 6 6 5.6099 2.8850 0.0013 7 6 6.1123 4.3058 0.0013 8 6 6.3477 4.9547 -1.1967 9 6 6.8028 6.2590 -1.1994 10 6 7.0340 6.9142 0.0014 11 8 7.4869 8.1955 0.0015 12 6 7.8179 8.7666 -1.2660 13 1 8.2108 8.0053 -1.9398 14 6 8.8338 9.9270 -1.0967 15 6 8.5321 10.7895 -2.3476 16 7 7.0705 10.7051 -2.5205 17 6 6.2888 11.6254 -3.1665 18 1 5.2224 11.4715 -3.2402 19 6 6.8672 12.7562 -3.7267 20 7 8.1668 12.9436 -3.6373 21 14 5.8008 14.0119 -4.6073 22 1 5.3359 15.0347 -3.6360 23 1 6.5923 14.6697 -5.6778 24 1 4.6264 13.3298 -5.2079 25 6 6.5912 9.4688 -1.8853 26 6 6.8024 6.2590 1.2021 27 6 6.3428 4.9563 1.1994 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9287 0.8908 36 1 3.9337 0.9286 -0.8891 37 1 3.7170 3.3991 -0.8887 38 1 3.7162 3.3986 0.8912 39 1 5.9733 2.3708 0.8911 40 1 5.9733 2.3716 -0.8890 41 1 6.1718 4.4427 -2.1313 42 1 6.9826 6.7667 -2.1355 43 1 8.6400 10.4856 -0.1810 44 1 9.8583 9.5551 -1.1157 45 1 8.8350 11.8227 -2.1780 46 1 9.0415 10.3824 -3.2210 47 1 8.5709 13.7340 -4.0284 48 1 6.1318 8.8220 -2.6328 49 1 5.8684 9.7090 -1.1054 50 1 6.9820 6.7668 2.1383 51 1 6.1619 4.4460 2.1339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231252715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:12 Heat of formation + Delta-G solvation = -33.688616 kcal Electronic energy + Delta-G solvation = -25535.327745 eV Core-core repulsion = 22012.780271 eV Total energy + Delta-G solvation = -3522.547474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32896 -39.51447 -37.98661 -37.11895 -34.69696 -34.19459 -32.00255 -31.64793 -31.07225 -29.19141 -28.32938 -26.56451 -25.08339 -23.97706 -22.74271 -22.15351 -21.83313 -21.79371 -21.19605 -19.26768 -19.03596 -17.18079 -16.90753 -16.60800 -16.55924 -16.35539 -15.62189 -15.51106 -15.16049 -15.10314 -14.81607 -14.45039 -14.32466 -14.25918 -14.11031 -13.67884 -13.64551 -13.39904 -13.28252 -13.01042 -12.80937 -12.71799 -12.60836 -12.37460 -12.18117 -12.11822 -12.05017 -11.93716 -11.79564 -11.71983 -11.52945 -11.48785 -11.37814 -11.27963 -11.19777 -10.80123 -9.92310 -9.01126 -8.94120 -7.82964 -5.28839 0.41978 0.48547 1.45408 1.47652 1.56386 2.17831 2.47771 2.80914 3.27774 3.58073 3.64582 3.78121 3.87987 3.91597 3.94716 4.04064 4.07059 4.12346 4.24447 4.27115 4.42098 4.47718 4.52274 4.54214 4.57119 4.63799 4.67217 4.77284 4.83327 4.88286 4.92330 4.93638 4.96406 5.00156 5.04423 5.12659 5.14668 5.21354 5.27694 5.30577 5.39038 5.42098 5.45248 5.47765 5.51467 5.52962 5.58514 5.71430 5.75514 5.93188 6.23335 6.50698 7.04194 7.68914 8.32150 9.19283 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.002091 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.445197 B =13388.007357 C =14763.973633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.068 4.068 7 C -0.123 4.123 8 C -0.083 4.083 9 C -0.217 4.217 10 C 0.102 3.898 11 O -0.317 6.317 12 C 0.087 3.913 13 H 0.092 0.908 14 C -0.123 4.123 15 C 0.155 3.845 16 N -0.623 5.623 17 C -0.246 4.246 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.946 5.946 21 Si 0.985 3.015 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.271 1.271 25 C 0.120 3.880 26 C -0.162 4.162 27 C -0.077 4.077 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.138 0.862 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.001 0.999 47 H 0.250 0.750 48 H 0.029 0.971 49 H 0.023 0.977 50 H 0.135 0.865 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 -26.480 9.743 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.101 4.101 9 C -0.236 4.236 10 C 0.057 3.943 11 O -0.231 6.231 12 C 0.031 3.969 13 H 0.110 0.890 14 C -0.162 4.162 15 C 0.031 3.969 16 N -0.350 5.350 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.256 4.256 20 N -0.596 5.596 21 Si 0.812 3.188 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.196 1.196 25 C -0.006 4.006 26 C -0.181 4.181 27 C -0.095 4.095 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.156 0.844 42 H 0.139 0.861 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.019 0.981 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.041 0.959 50 H 0.153 0.847 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.865 -26.173 9.793 28.775 hybrid contribution -0.413 1.204 -0.957 1.592 sum -7.278 -24.969 8.836 27.468 Atomic orbital electron populations 1.21802 0.95967 1.01830 1.01698 1.21536 0.95860 0.96646 1.02162 1.21633 0.95704 0.96936 1.01705 1.21576 0.95070 0.96038 1.02524 1.21563 0.94369 0.97209 1.01820 1.20542 0.95398 0.90879 1.03744 1.20074 1.01851 0.97907 0.92487 1.21060 0.96894 0.93081 0.99020 1.21426 1.07491 0.97688 0.97010 1.19441 0.95720 0.83804 0.95288 1.86108 1.79425 1.25450 1.32086 1.23333 0.95169 0.94938 0.83491 0.88992 1.23021 0.98375 0.95076 0.99694 1.21780 0.83221 1.00042 0.91900 1.44668 1.04343 1.21161 1.64857 1.19430 0.90985 0.99433 1.27590 0.90341 1.25670 0.97448 1.00398 1.02088 1.69996 1.10024 1.28984 1.50552 0.84995 0.77578 0.78599 0.77619 1.21110 1.21576 1.19602 1.21759 0.95481 0.88309 0.95026 1.20665 1.05576 0.95945 0.95906 1.21118 0.96621 0.92762 0.98979 0.92321 0.92830 0.93056 0.91978 0.91700 0.92318 0.92709 0.91230 0.91697 0.92966 0.92250 0.89723 0.90488 0.84430 0.86072 0.91246 0.88457 0.89913 0.98094 0.93985 0.95288 0.95925 0.84699 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.29 5.93 30.59 0.18 -1.11 16 3 C -0.12 -1.43 5.21 30.59 0.16 -1.27 16 4 C -0.11 -1.26 5.22 30.59 0.16 -1.10 16 5 C -0.11 -1.53 5.20 30.60 0.16 -1.37 16 6 C -0.07 -0.94 5.34 29.85 0.16 -0.78 16 7 C -0.12 -2.44 5.13 -19.85 -0.10 -2.54 16 8 C -0.08 -1.92 9.69 22.25 0.22 -1.70 16 9 C -0.22 -6.27 8.90 22.37 0.20 -6.07 16 10 C 0.10 3.18 6.67 22.51 0.15 3.33 16 11 O -0.32 -11.40 9.86 -92.41 -0.91 -12.32 16 12 C 0.09 3.29 2.74 31.78 0.09 3.38 16 13 H 0.09 3.18 6.26 -2.39 -0.01 3.16 16 14 C -0.12 -4.86 6.81 31.99 0.22 -4.64 16 15 C 0.16 7.79 5.89 86.86 0.51 8.30 16 16 N -0.62 -33.42 3.39 -691.97 -2.35 -35.77 16 17 C -0.25 -14.18 10.27 84.03 0.86 -13.31 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 20 N -0.95 -56.35 10.09 21.65 0.22 -56.14 16 21 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 C 0.12 5.38 6.80 86.73 0.59 5.97 16 26 C -0.16 -4.18 9.99 22.36 0.22 -3.96 16 27 C -0.08 -1.56 9.69 22.25 0.22 -1.35 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 40 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 41 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.12 3.64 5.62 -2.91 -0.02 3.63 16 43 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.08 4.68 5.88 -2.39 -0.01 4.66 16 46 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 48 H 0.03 1.27 7.80 -2.39 -0.02 1.25 16 49 H 0.02 1.06 8.06 -2.38 -0.02 1.04 16 50 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 51 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -65.38 403.20 5.02 -60.37 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.86 Total: 18.09 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 5.17 Total: -22.25 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -2.13 Total: -91.91 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.91 Total: -12.32 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -65.38 5.02 -60.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231252715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.677 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds