Wall clock time and date at job start Tue Mar 31 2020 12:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47395 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47395 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47395 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47309 * 179.97438 * 6 5 4 8 8 C 1.38261 * 119.94393 * 89.99520 * 7 6 5 9 9 C 1.38142 * 120.05405 * 180.02562 * 8 7 6 10 10 C 1.38738 * 119.94691 * 0.02562 * 9 8 7 11 11 O 1.35899 * 120.05576 * 180.02562 * 10 9 8 12 12 C 1.42896 * 116.99992 * 185.48553 * 11 10 9 13 13 H 1.09005 * 110.78179 * 33.00424 * 12 11 10 14 14 C 1.55150 * 110.72620 * 156.24945 * 12 11 10 15 15 C 1.54911 * 101.58681 * 153.86322 * 14 12 11 16 16 N 1.47427 * 104.82922 * 322.99263 * 15 14 12 17 17 C 1.36933 * 125.64573 * 204.07543 * 16 15 14 18 18 H 1.07999 * 119.99899 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00005 * 0.06268 * 17 16 15 20 20 N 1.31616 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47128 * 119.99720 * 21 19 17 24 24 H 1.48495 * 109.47251 * 239.99697 * 21 19 17 25 25 C 1.47020 * 108.70386 * 24.12844 * 16 15 14 26 26 C 1.38723 * 119.88370 * 0.27478 * 10 9 8 27 27 C 1.38146 * 119.94779 * 359.47096 * 26 10 9 28 28 H 1.09000 * 109.47640 * 60.00064 * 1 2 3 29 29 H 1.09003 * 109.47340 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47432 * 300.00029 * 1 2 3 31 31 H 1.09005 * 109.47432 * 239.99971 * 2 1 3 32 32 H 1.09000 * 109.47640 * 119.99936 * 2 1 3 33 33 H 1.08998 * 109.47233 * 59.99653 * 3 2 1 34 34 H 1.09005 * 109.46813 * 300.00049 * 3 2 1 35 35 H 1.08998 * 109.47470 * 59.99484 * 4 3 2 36 36 H 1.09005 * 109.46924 * 299.99667 * 4 3 2 37 37 H 1.08998 * 109.47233 * 59.99339 * 5 4 3 38 38 H 1.09005 * 109.46813 * 299.99735 * 5 4 3 39 39 H 1.08992 * 109.47458 * 59.99936 * 6 5 4 40 40 H 1.09000 * 109.46892 * 299.99179 * 6 5 4 41 41 H 1.08001 * 119.97425 * 359.97438 * 8 7 6 42 42 H 1.08007 * 120.03105 * 179.97438 * 9 8 7 43 43 H 1.08996 * 111.00796 * 271.94463 * 14 12 11 44 44 H 1.09003 * 111.00043 * 35.79171 * 14 12 11 45 45 H 1.09001 * 110.36151 * 81.83043 * 15 14 12 46 46 H 1.08996 * 110.36567 * 204.15548 * 15 14 12 47 47 H 0.96996 * 120.00057 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.88141 * 239.52243 * 25 16 15 49 49 H 1.08996 * 109.88402 * 118.35701 * 25 16 15 50 50 H 1.08001 * 120.02891 * 179.71943 * 26 10 9 51 51 H 1.07996 * 119.97385 * 180.22701 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6099 2.8850 0.0000 7 6 6.1123 4.3058 0.0000 8 6 6.3423 4.9565 1.1981 9 6 6.8023 6.2591 1.2007 10 6 7.0330 6.9145 -0.0001 11 8 7.4860 8.1958 -0.0001 12 6 7.5866 8.8484 -1.2673 13 1 6.8037 8.5037 -1.9430 14 6 7.5260 10.3894 -1.0977 15 6 8.3018 10.8708 -2.3492 16 7 9.3853 9.8864 -2.5234 17 6 10.5709 10.1108 -3.1706 18 1 11.3034 9.3206 -3.2452 19 6 10.8317 11.3540 -3.7303 20 7 9.9392 12.3170 -3.6393 21 14 12.4495 11.6603 -4.6127 22 1 13.2742 10.4259 -4.5770 23 1 12.1802 12.0345 -6.0244 24 1 13.1797 12.7638 -3.9388 25 6 8.9814 8.6235 -1.8882 26 6 6.7955 6.2615 -1.2007 27 6 6.3405 4.9571 -1.1981 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 3.7169 3.3983 0.8904 38 1 3.7163 3.3993 -0.8896 39 1 5.9733 2.3716 -0.8901 40 1 5.9732 2.3709 0.8898 41 1 6.1613 4.4463 2.1326 42 1 6.9814 6.7672 2.1368 43 1 6.4957 10.7444 -1.1162 44 1 8.0288 10.7017 -0.1824 45 1 7.6488 10.8747 -3.2220 46 1 8.7159 11.8647 -2.1797 47 1 10.1213 13.1856 -4.0308 48 1 9.6951 8.3556 -1.1090 49 1 8.9312 7.8319 -2.6358 50 1 6.9700 6.7711 -2.1369 51 1 6.1590 4.4471 -2.1326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231252716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:16 Heat of formation + Delta-G solvation = -21.257678 kcal Electronic energy + Delta-G solvation = -25475.680610 eV Core-core repulsion = 21953.672183 eV Total energy + Delta-G solvation = -3522.008428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.12145 -38.27447 -36.82803 -36.08313 -33.90193 -32.33553 -30.95630 -30.76175 -29.30688 -27.78043 -27.22226 -24.77615 -24.21525 -22.84268 -21.90509 -21.30920 -20.88106 -20.25873 -19.92651 -17.99437 -17.04630 -16.31514 -15.72148 -15.47752 -15.19262 -14.73330 -14.63709 -14.35521 -14.32011 -13.83933 -13.73153 -13.49687 -13.36855 -13.03110 -12.94629 -12.64476 -12.45968 -12.02231 -11.95063 -11.79795 -11.67979 -11.56198 -11.39128 -11.20351 -11.05781 -11.00806 -10.88904 -10.79489 -10.72224 -10.66495 -10.37805 -10.17116 -9.99610 -9.82647 -9.62414 -8.91686 -8.70349 -7.87478 -6.90079 -5.70160 -3.12385 1.42743 1.51960 3.38043 3.43208 3.45923 3.52700 3.81888 4.36162 4.46171 4.53760 4.69081 4.75033 4.80826 4.91976 4.98505 5.07050 5.13592 5.19570 5.23026 5.31682 5.38172 5.41332 5.43334 5.44897 5.49142 5.52807 5.58894 5.62166 5.65314 5.67051 5.71467 5.78342 5.79770 5.86602 5.95688 6.03803 6.11009 6.12825 6.24769 6.37514 6.39656 6.47850 6.48917 6.62215 6.63635 6.68050 6.95868 7.41493 7.58060 7.73388 7.81691 8.29518 9.16618 9.76887 10.40205 11.34286 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.001851 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.408450 B =15127.313775 C =15303.272447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.132 4.132 8 C -0.080 4.080 9 C -0.157 4.157 10 C 0.138 3.862 11 O -0.305 6.305 12 C 0.069 3.931 13 H 0.077 0.923 14 C -0.136 4.136 15 C 0.152 3.848 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.917 3.083 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.120 3.880 26 C -0.205 4.205 27 C -0.076 4.076 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.016 0.984 46 H 0.114 0.886 47 H 0.253 0.747 48 H 0.035 0.965 49 H 0.025 0.975 50 H 0.131 0.869 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 -20.780 8.983 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.152 4.152 6 C -0.110 4.110 7 C -0.132 4.132 8 C -0.098 4.098 9 C -0.176 4.176 10 C 0.091 3.909 11 O -0.217 6.217 12 C 0.013 3.987 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.007 4.007 26 C -0.224 4.224 27 C -0.094 4.094 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.131 0.869 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.043 0.957 50 H 0.149 0.851 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.484 -20.489 9.025 27.221 hybrid contribution 0.780 0.119 -0.770 1.103 sum -14.704 -20.369 8.254 26.443 Atomic orbital electron populations 1.21784 0.96008 1.01490 1.01834 1.21543 0.95780 0.97095 1.01901 1.21635 0.95561 0.96579 1.02128 1.21632 0.95242 0.96951 1.01985 1.21606 0.94731 0.96433 1.02435 1.20493 0.95262 0.92734 1.02475 1.19689 1.03800 0.96657 0.93075 1.20747 0.98000 0.93571 0.97494 1.20416 1.05519 0.95302 0.96335 1.19132 0.93079 0.84717 0.93922 1.86159 1.79472 1.22911 1.33203 1.23672 0.98272 0.94068 0.82725 0.90504 1.23206 1.00835 0.90991 1.02454 1.21998 0.87745 0.97108 0.90371 1.44387 1.16801 1.06964 1.64693 1.19139 0.92109 0.96895 1.26961 0.90303 1.24800 0.98618 0.96040 1.01149 1.69766 1.33913 1.03478 1.49988 0.85964 0.82553 0.77798 0.78982 1.20479 1.21693 1.21636 1.21687 0.92832 0.90715 0.95441 1.21398 1.06661 0.96592 0.97753 1.20792 0.97356 0.93760 0.97503 0.92756 0.92903 0.92789 0.92125 0.92152 0.92048 0.92022 0.92040 0.92078 0.91908 0.91886 0.91375 0.91391 0.85916 0.85477 0.91545 0.90801 0.96570 0.86851 0.93647 0.94696 0.95678 0.85080 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.15 0.37 -0.47 16 2 C -0.13 -0.73 5.93 -26.74 -0.16 -0.89 16 3 C -0.12 -0.77 5.21 -26.73 -0.14 -0.91 16 4 C -0.12 -0.79 5.21 -26.73 -0.14 -0.93 16 5 C -0.11 -0.89 5.20 -26.73 -0.14 -1.02 16 6 C -0.07 -0.62 5.34 -27.88 -0.15 -0.76 16 7 C -0.13 -1.48 5.14 -104.60 -0.54 -2.02 16 8 C -0.08 -0.92 9.69 -39.61 -0.38 -1.31 16 9 C -0.16 -2.14 9.99 -39.43 -0.39 -2.53 16 10 C 0.14 2.18 6.67 -39.22 -0.26 1.92 16 11 O -0.30 -5.50 9.86 -19.42 -0.19 -5.69 16 12 C 0.07 1.30 2.74 -24.90 -0.07 1.23 16 13 H 0.08 1.34 6.25 -51.93 -0.32 1.02 16 14 C -0.14 -2.68 6.81 -24.59 -0.17 -2.85 16 15 C 0.15 3.71 5.89 -2.53 -0.01 3.70 16 16 N -0.60 -15.70 3.39 -170.07 -0.58 -16.28 16 17 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 21 Si 0.92 22.11 29.55 -169.99 -5.02 17.08 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.12 2.63 6.81 -3.06 -0.02 2.60 16 26 C -0.21 -3.02 8.91 -39.44 -0.35 -3.37 16 27 C -0.08 -0.95 9.69 -39.60 -0.38 -1.33 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.11 3.08 5.87 -51.93 -0.31 2.77 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 49 H 0.03 0.54 7.82 -51.93 -0.41 0.13 16 50 H 0.13 1.97 5.63 -52.49 -0.30 1.67 16 51 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -29.90 403.23 -11.67 -41.57 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -9.32 Total: -0.75 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -3.19 Total: -15.78 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.02 Total: -42.50 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.19 Total: -5.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.90 -11.67 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231252716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.309 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds