Wall clock time and date at job start Tue Mar 31 2020 12:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47395 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47395 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47395 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47309 * 179.97438 * 6 5 4 8 8 C 1.38261 * 119.94393 * 89.99520 * 7 6 5 9 9 C 1.38142 * 120.05405 * 180.02562 * 8 7 6 10 10 C 1.38738 * 119.94691 * 0.02562 * 9 8 7 11 11 O 1.35899 * 120.05576 * 180.02562 * 10 9 8 12 12 C 1.42896 * 116.99992 * 185.48553 * 11 10 9 13 13 H 1.09005 * 110.78179 * 33.00424 * 12 11 10 14 14 C 1.55150 * 110.72620 * 156.24945 * 12 11 10 15 15 C 1.54911 * 101.58681 * 153.86322 * 14 12 11 16 16 N 1.47427 * 104.82922 * 322.99263 * 15 14 12 17 17 C 1.36933 * 125.64573 * 204.07543 * 16 15 14 18 18 H 1.07999 * 119.99899 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00005 * 0.06268 * 17 16 15 20 20 N 1.31616 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47128 * 119.99720 * 21 19 17 24 24 H 1.48495 * 109.47251 * 239.99697 * 21 19 17 25 25 C 1.47020 * 108.70386 * 24.12844 * 16 15 14 26 26 C 1.38723 * 119.88370 * 0.27478 * 10 9 8 27 27 C 1.38146 * 119.94779 * 359.47096 * 26 10 9 28 28 H 1.09000 * 109.47640 * 60.00064 * 1 2 3 29 29 H 1.09003 * 109.47340 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47432 * 300.00029 * 1 2 3 31 31 H 1.09005 * 109.47432 * 239.99971 * 2 1 3 32 32 H 1.09000 * 109.47640 * 119.99936 * 2 1 3 33 33 H 1.08998 * 109.47233 * 59.99653 * 3 2 1 34 34 H 1.09005 * 109.46813 * 300.00049 * 3 2 1 35 35 H 1.08998 * 109.47470 * 59.99484 * 4 3 2 36 36 H 1.09005 * 109.46924 * 299.99667 * 4 3 2 37 37 H 1.08998 * 109.47233 * 59.99339 * 5 4 3 38 38 H 1.09005 * 109.46813 * 299.99735 * 5 4 3 39 39 H 1.08992 * 109.47458 * 59.99936 * 6 5 4 40 40 H 1.09000 * 109.46892 * 299.99179 * 6 5 4 41 41 H 1.08001 * 119.97425 * 359.97438 * 8 7 6 42 42 H 1.08007 * 120.03105 * 179.97438 * 9 8 7 43 43 H 1.08996 * 111.00796 * 271.94463 * 14 12 11 44 44 H 1.09003 * 111.00043 * 35.79171 * 14 12 11 45 45 H 1.09001 * 110.36151 * 81.83043 * 15 14 12 46 46 H 1.08996 * 110.36567 * 204.15548 * 15 14 12 47 47 H 0.96996 * 120.00057 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.88141 * 239.52243 * 25 16 15 49 49 H 1.08996 * 109.88402 * 118.35701 * 25 16 15 50 50 H 1.08001 * 120.02891 * 179.71943 * 26 10 9 51 51 H 1.07996 * 119.97385 * 180.22701 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6099 2.8850 0.0000 7 6 6.1123 4.3058 0.0000 8 6 6.3423 4.9565 1.1981 9 6 6.8023 6.2591 1.2007 10 6 7.0330 6.9145 -0.0001 11 8 7.4860 8.1958 -0.0001 12 6 7.5866 8.8484 -1.2673 13 1 6.8037 8.5037 -1.9430 14 6 7.5260 10.3894 -1.0977 15 6 8.3018 10.8708 -2.3492 16 7 9.3853 9.8864 -2.5234 17 6 10.5709 10.1108 -3.1706 18 1 11.3034 9.3206 -3.2452 19 6 10.8317 11.3540 -3.7303 20 7 9.9392 12.3170 -3.6393 21 14 12.4495 11.6603 -4.6127 22 1 13.2742 10.4259 -4.5770 23 1 12.1802 12.0345 -6.0244 24 1 13.1797 12.7638 -3.9388 25 6 8.9814 8.6235 -1.8882 26 6 6.7955 6.2615 -1.2007 27 6 6.3405 4.9571 -1.1981 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 3.7169 3.3983 0.8904 38 1 3.7163 3.3993 -0.8896 39 1 5.9733 2.3716 -0.8901 40 1 5.9732 2.3709 0.8898 41 1 6.1613 4.4463 2.1326 42 1 6.9814 6.7672 2.1368 43 1 6.4957 10.7444 -1.1162 44 1 8.0288 10.7017 -0.1824 45 1 7.6488 10.8747 -3.2220 46 1 8.7159 11.8647 -2.1797 47 1 10.1213 13.1856 -4.0308 48 1 9.6951 8.3556 -1.1090 49 1 8.9312 7.8319 -2.6358 50 1 6.9700 6.7711 -2.1369 51 1 6.1590 4.4471 -2.1326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231252716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:15 Heat of formation + Delta-G solvation = -33.735799 kcal Electronic energy + Delta-G solvation = -25476.221702 eV Core-core repulsion = 21953.672183 eV Total energy + Delta-G solvation = -3522.549520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32906 -39.51539 -37.98705 -37.11486 -34.69552 -34.19422 -32.00179 -31.64618 -31.07294 -29.19159 -28.32513 -26.56633 -25.08072 -23.97798 -22.74223 -22.15228 -21.82534 -21.78870 -21.19885 -19.27065 -19.03671 -17.18009 -16.90412 -16.61364 -16.55647 -16.35320 -15.61048 -15.52211 -15.15620 -15.10276 -14.78439 -14.45776 -14.36926 -14.25185 -14.08545 -13.69974 -13.63839 -13.39351 -13.26910 -13.00275 -12.80085 -12.73420 -12.64035 -12.36758 -12.17367 -12.07961 -12.01562 -11.94101 -11.79988 -11.71699 -11.56563 -11.49542 -11.37376 -11.27203 -11.16867 -10.80989 -9.92337 -9.01108 -8.94096 -7.83151 -5.29003 0.41978 0.48577 1.45665 1.46758 1.57322 2.17782 2.47691 2.81022 3.27863 3.58027 3.64463 3.78127 3.87863 3.91526 3.94721 4.04256 4.07560 4.12961 4.24829 4.27419 4.42206 4.47758 4.52368 4.54509 4.57339 4.64171 4.67653 4.77581 4.83387 4.88751 4.92491 4.93804 4.96735 5.00639 5.04646 5.12950 5.14866 5.21987 5.28165 5.31285 5.39258 5.42197 5.45658 5.47817 5.52026 5.52885 5.59000 5.71425 5.75522 5.93154 6.23301 6.50743 7.04241 7.68871 8.32088 9.19350 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.001851 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.408450 B =15127.313775 C =15303.272447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.070 4.070 7 C -0.123 4.123 8 C -0.077 4.077 9 C -0.162 4.162 10 C 0.102 3.898 11 O -0.317 6.317 12 C 0.087 3.913 13 H 0.092 0.908 14 C -0.123 4.123 15 C 0.155 3.845 16 N -0.623 5.623 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.947 5.947 21 Si 0.984 3.016 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.120 3.880 26 C -0.217 4.217 27 C -0.083 4.083 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.001 0.999 46 H 0.083 0.917 47 H 0.250 0.750 48 H 0.023 0.977 49 H 0.030 0.970 50 H 0.122 0.878 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 -23.108 9.779 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.107 4.107 7 C -0.123 4.123 8 C -0.095 4.095 9 C -0.181 4.181 10 C 0.057 3.943 11 O -0.230 6.230 12 C 0.031 3.969 13 H 0.110 0.890 14 C -0.162 4.162 15 C 0.030 3.970 16 N -0.350 5.350 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.812 3.188 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.006 4.006 26 C -0.236 4.236 27 C -0.101 4.101 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.171 0.829 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.019 0.981 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.041 0.959 49 H 0.047 0.953 50 H 0.139 0.861 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.216 -22.849 9.838 29.696 hybrid contribution 0.948 0.708 -0.972 1.531 sum -15.268 -22.142 8.866 28.319 Atomic orbital electron populations 1.21796 0.95891 1.01808 1.01746 1.21539 0.95918 0.96727 1.02090 1.21622 0.95556 0.96882 1.01800 1.21586 0.95192 0.96124 1.02431 1.21550 0.94101 0.97162 1.01963 1.20546 0.95632 0.90879 1.03619 1.20072 1.01899 0.97840 0.92494 1.21116 0.96670 0.92723 0.98972 1.20667 1.05344 0.96165 0.95907 1.19439 0.95361 0.84164 0.95287 1.86108 1.80472 1.24391 1.32067 1.23327 0.96587 0.93530 0.83500 0.89009 1.23019 1.01703 0.91743 0.99697 1.21780 0.87521 0.95764 0.91889 1.44672 1.16740 1.08836 1.64790 1.19476 0.93186 0.97251 1.27473 0.90300 1.25660 1.01997 0.95799 1.02081 1.70001 1.35496 1.03588 1.50528 0.84933 0.78637 0.77788 0.77463 1.19299 1.21545 1.21520 1.21765 0.94561 0.89239 0.95045 1.21422 1.07531 0.97639 0.97014 1.21056 0.96950 0.93030 0.99015 0.92963 0.92412 0.92781 0.92063 0.91815 0.92203 0.92557 0.91814 0.91384 0.92084 0.92723 0.90659 0.89894 0.82884 0.84693 0.88483 0.91230 0.98112 0.89907 0.93987 0.95886 0.95253 0.86064 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.22 5.93 30.59 0.18 -1.04 16 3 C -0.12 -1.31 5.21 30.59 0.16 -1.15 16 4 C -0.12 -1.21 5.21 30.59 0.16 -1.05 16 5 C -0.11 -1.41 5.20 30.59 0.16 -1.25 16 6 C -0.07 -0.96 5.34 29.85 0.16 -0.80 16 7 C -0.12 -2.44 5.14 -19.85 -0.10 -2.54 16 8 C -0.08 -1.56 9.69 22.25 0.22 -1.35 16 9 C -0.16 -4.18 9.99 22.37 0.22 -3.95 16 10 C 0.10 3.18 6.67 22.51 0.15 3.33 16 11 O -0.32 -11.38 9.86 -92.41 -0.91 -12.29 16 12 C 0.09 3.29 2.74 31.78 0.09 3.37 16 13 H 0.09 3.18 6.25 -2.38 -0.01 3.16 16 14 C -0.12 -4.85 6.81 31.98 0.22 -4.64 16 15 C 0.16 7.78 5.89 86.86 0.51 8.29 16 16 N -0.62 -33.40 3.39 -691.98 -2.35 -35.75 16 17 C -0.25 -14.14 10.27 84.03 0.86 -13.27 16 18 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 20 N -0.95 -56.37 10.09 21.65 0.22 -56.16 16 21 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 C 0.12 5.36 6.81 86.73 0.59 5.95 16 26 C -0.22 -6.26 8.91 22.36 0.20 -6.06 16 27 C -0.08 -1.92 9.69 22.25 0.22 -1.70 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 40 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 41 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.08 4.68 5.87 -2.39 -0.01 4.66 16 47 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.02 1.08 8.06 -2.39 -0.02 1.06 16 49 H 0.03 1.28 7.82 -2.39 -0.02 1.26 16 50 H 0.12 3.64 5.63 -2.91 -0.02 3.62 16 51 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -65.32 403.23 5.02 -60.30 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.86 Total: 17.64 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 5.17 Total: -21.73 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -2.13 Total: -91.91 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.91 Total: -12.29 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -65.32 5.02 -60.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231252716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.564 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds