Wall clock time and date at job start Tue Mar 31 2020 11:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38169 * 120.02834 * 2 1 4 4 C 1.38244 * 120.05417 * 179.76482 * 3 2 1 5 5 C 1.38285 * 120.11298 * 0.51633 * 4 3 2 6 6 C 1.38129 * 120.05481 * 359.48383 * 5 4 3 7 7 C 1.50694 * 120.02558 * 180.27616 * 6 5 4 8 8 N 1.46899 * 109.47460 * 254.19413 * 7 6 5 9 9 C 1.46849 * 110.99434 * 45.79583 * 8 7 6 10 10 C 1.53038 * 109.51994 * 185.84098 * 9 8 7 11 11 C 1.53119 * 109.27832 * 300.81665 * 10 9 8 12 12 C 1.53119 * 109.15878 * 57.65728 * 11 10 9 13 13 H 1.08997 * 109.53713 * 62.30747 * 12 11 10 14 14 C 1.50701 * 109.50036 * 182.40422 * 12 11 10 15 15 H 1.08000 * 119.99716 * 119.80591 * 14 12 11 16 16 C 1.37874 * 120.00152 * 299.80205 * 14 12 11 17 17 N 1.31516 * 120.00273 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99858 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47460 * 89.99975 * 18 16 14 20 20 H 1.48500 * 109.46711 * 209.99790 * 18 16 14 21 21 H 1.48498 * 109.47231 * 329.99551 * 18 16 14 22 22 C 1.46847 * 111.00106 * 169.99960 * 8 7 6 23 23 C 1.38709 * 120.02976 * 180.02562 * 2 1 3 24 24 O 1.35906 * 120.05408 * 0.02562 * 23 2 1 25 25 C 1.42895 * 116.99432 * 278.44631 * 24 23 2 26 26 C 1.53009 * 109.46817 * 154.31954 * 25 24 23 27 27 C 1.53001 * 109.47257 * 274.31308 * 25 24 23 28 28 H 1.08999 * 109.47140 * 269.97688 * 1 2 3 29 29 H 1.09005 * 109.47116 * 29.97855 * 1 2 3 30 30 H 1.09000 * 109.47353 * 149.97234 * 1 2 3 31 31 H 1.07999 * 119.97115 * 0.02810 * 3 2 1 32 32 H 1.08002 * 119.94510 * 180.25762 * 4 3 2 33 33 H 1.07995 * 119.97193 * 179.76824 * 5 4 3 34 34 H 1.09002 * 109.47682 * 14.20063 * 7 6 5 35 35 H 1.09002 * 109.47143 * 134.19711 * 7 6 5 36 36 H 1.09003 * 109.46222 * 305.84895 * 9 8 7 37 37 H 1.08997 * 109.46815 * 65.82683 * 9 8 7 38 38 H 1.09001 * 109.50162 * 180.87783 * 10 9 8 39 39 H 1.08996 * 109.50795 * 60.76289 * 10 9 8 40 40 H 1.08995 * 109.52478 * 297.75368 * 11 10 9 41 41 H 1.09003 * 109.52646 * 177.56153 * 11 10 9 42 42 H 0.96993 * 120.00255 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.46513 * 294.18309 * 22 8 7 44 44 H 1.09001 * 109.45855 * 54.15476 * 22 8 7 45 45 H 1.08998 * 109.47834 * 34.31762 * 25 24 23 46 46 H 1.08996 * 109.46992 * 59.99887 * 26 25 24 47 47 H 1.08995 * 109.47097 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.46878 * 299.99576 * 26 25 24 49 49 H 1.08994 * 109.47265 * 307.19791 * 27 25 24 50 50 H 1.08999 * 109.46944 * 67.19897 * 27 25 24 51 51 H 1.09006 * 109.47238 * 187.19551 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0049 5 6 4.2752 0.0010 -0.0009 6 6 3.5886 -1.1976 -0.0010 7 6 4.3460 -2.5004 -0.0010 8 7 4.2659 -3.1133 -1.3336 9 6 4.5268 -2.1221 -2.3852 10 6 4.2927 -2.7584 -3.7572 11 6 5.2248 -3.9620 -3.9218 12 6 4.9664 -4.9567 -2.7868 13 1 3.9410 -5.3210 -2.8478 14 6 5.9206 -6.1169 -2.9076 15 1 6.6112 -6.3338 -2.1061 16 6 5.9118 -6.9015 -4.0413 17 7 5.0711 -6.6371 -5.0175 18 14 7.0940 -8.3401 -4.1908 19 1 6.4573 -9.5634 -3.6402 20 1 7.4303 -8.5578 -5.6207 21 1 8.3343 -8.0425 -3.4303 22 6 5.1809 -4.2566 -1.4429 23 6 2.2011 -1.2009 -0.0005 24 8 1.5233 -2.3789 -0.0016 25 6 1.0372 -2.8486 1.2574 26 6 -0.1746 -3.7547 1.0302 27 6 2.1388 -3.6387 1.9668 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 1.6584 2.1315 0.0005 32 1 4.1195 2.1330 0.0091 33 1 5.3551 0.0042 -0.0009 34 1 5.3899 -2.3139 0.2510 35 1 3.9092 -3.1746 0.7357 36 1 3.8545 -1.2734 -2.2592 37 1 5.5595 -1.7808 -2.3146 38 1 4.5015 -2.0270 -4.5380 39 1 3.2565 -3.0875 -3.8338 40 1 6.2616 -3.6277 -3.8842 41 1 5.0312 -4.4444 -4.8800 42 1 5.0646 -7.1893 -5.8149 43 1 6.2106 -3.9053 -1.3766 44 1 4.9838 -4.9583 -0.6324 45 1 0.7449 -1.9988 1.8741 46 1 0.1178 -4.6046 0.4135 47 1 -0.5457 -4.1127 1.9905 48 1 -0.9594 -3.1919 0.5248 49 1 2.5201 -4.4107 1.2986 50 1 2.9494 -2.9642 2.2427 51 1 1.7317 -4.1038 2.8646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232391362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:13 Heat of formation + Delta-G solvation = -40.190939 kcal Electronic energy + Delta-G solvation = -28276.216875 eV Core-core repulsion = 24753.387439 eV Total energy + Delta-G solvation = -3522.829435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45016 -39.62420 -38.45074 -35.91128 -34.23546 -33.93956 -32.92227 -31.71695 -30.84952 -28.32437 -27.62926 -26.96678 -26.89669 -23.85199 -23.39893 -23.03397 -21.76959 -21.41933 -20.33355 -18.72502 -18.42010 -17.14687 -16.96249 -16.56990 -16.31570 -16.04628 -15.60836 -15.35253 -14.96461 -14.85557 -14.78401 -14.42739 -14.33488 -14.06637 -13.90084 -13.58038 -13.52597 -13.30948 -13.16918 -13.12132 -12.99477 -12.85759 -12.75787 -12.63640 -12.49394 -12.36466 -12.00135 -11.95731 -11.82982 -11.72138 -11.60497 -11.39095 -10.87757 -10.68183 -10.62931 -10.37882 -9.56794 -9.33688 -9.01895 -8.07128 -6.21840 0.33393 0.38345 1.41313 1.41513 1.52072 2.42825 2.53480 2.96960 3.19575 3.28047 3.75950 3.89095 3.99703 4.08830 4.13578 4.20121 4.22133 4.26268 4.36548 4.39216 4.46204 4.50720 4.56800 4.60159 4.70962 4.71915 4.77828 4.81580 4.84091 4.87338 4.87571 4.92224 4.96897 5.01186 5.09421 5.11468 5.17438 5.28659 5.30619 5.36081 5.37445 5.49272 5.55786 5.56794 5.63180 5.68908 5.94658 5.97396 6.12845 6.21901 6.38009 6.47337 6.82619 6.90735 7.45992 8.97813 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003744 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.218112 B = 7477.516751 C = 8204.918721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.106 4.106 7 C 0.089 3.911 8 N -0.530 5.530 9 C 0.076 3.924 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.057 3.943 13 H -0.007 1.007 14 C -0.536 4.536 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.268 1.268 22 C 0.084 3.916 23 C 0.103 3.897 24 O -0.334 6.334 25 C 0.087 3.913 26 C -0.145 4.145 27 C -0.177 4.177 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.033 0.967 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.023 0.977 41 H 0.058 0.942 42 H 0.260 0.740 43 H 0.014 0.986 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.094 0.906 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 16.429 14.632 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.125 4.125 3 C -0.127 4.127 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.037 4.037 8 N -0.254 5.254 9 C -0.051 4.051 10 C -0.147 4.147 11 C -0.138 4.138 12 C 0.038 3.962 13 H 0.011 0.989 14 C -0.575 4.575 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.044 4.044 23 C 0.058 3.942 24 O -0.251 6.251 25 C 0.032 3.968 26 C -0.202 4.202 27 C -0.234 4.234 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.113 0.887 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.148 16.052 14.254 23.335 hybrid contribution 1.659 -0.869 -0.294 1.895 sum -7.489 15.183 13.960 21.943 Atomic orbital electron populations 1.20706 0.89542 1.03281 1.02870 1.20529 0.97807 0.92474 1.01701 1.21244 0.94317 0.97555 0.99574 1.21385 0.94498 0.98237 0.99959 1.21155 1.00292 0.91678 1.00543 1.20082 0.93405 0.95092 1.02101 1.21240 0.97101 0.93444 0.91945 1.62019 1.52871 1.08293 1.02192 1.21905 0.97921 0.94000 0.91308 1.21566 0.99389 0.97505 0.96204 1.21432 0.95816 0.94785 1.01786 1.18534 0.94756 0.92436 0.90472 0.98879 1.21510 1.19921 1.13324 1.02729 0.93013 1.25733 0.97224 1.00020 0.95460 1.70050 1.37990 1.40000 1.07495 0.85599 0.79419 0.79655 0.77224 1.20107 1.20823 1.19247 1.21975 0.91843 0.91575 0.98984 1.18526 0.89475 0.85536 1.00626 1.86172 1.71873 1.36019 1.31049 1.22421 0.94250 0.96534 0.83631 1.21855 0.95885 0.99129 1.03335 1.22471 0.99167 1.00674 1.01108 0.90192 0.89924 0.92311 0.83147 0.83266 0.85412 0.94902 0.89167 0.90874 0.96035 0.91618 0.93774 0.95827 0.92378 0.93077 0.96776 0.92734 0.91210 0.93298 0.88702 0.91602 0.93149 0.92696 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.29 71.23 0.66 -1.26 16 2 C -0.12 -2.84 5.83 -19.77 -0.12 -2.95 16 3 C -0.11 -2.04 9.70 22.25 0.22 -1.83 16 4 C -0.12 -2.35 10.04 22.28 0.22 -2.13 16 5 C -0.12 -2.82 9.11 22.25 0.20 -2.61 16 6 C -0.11 -3.03 3.45 -19.77 -0.07 -3.10 16 7 C 0.09 2.92 4.98 85.56 0.43 3.35 16 8 N -0.53 -21.10 4.80 -900.93 -4.32 -25.43 16 9 C 0.08 2.92 4.94 86.33 0.43 3.35 16 10 C -0.11 -4.66 6.09 30.65 0.19 -4.48 16 11 C -0.10 -5.11 5.03 30.67 0.15 -4.95 16 12 C 0.06 3.07 2.26 -11.49 -0.03 3.04 16 13 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 14 C -0.54 -30.88 8.56 25.60 0.22 -30.66 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 16 C 0.01 0.82 5.30 84.65 0.45 1.27 16 17 N -0.92 -54.94 11.36 21.45 0.24 -54.70 16 18 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 C 0.08 3.81 4.65 86.33 0.40 4.21 16 23 C 0.10 2.89 5.50 22.51 0.12 3.01 16 24 O -0.33 -10.12 8.25 -92.50 -0.76 -10.88 16 25 C 0.09 2.00 3.08 30.60 0.09 2.09 16 26 C -0.14 -2.92 9.56 71.99 0.69 -2.24 16 27 C -0.18 -4.07 7.86 71.98 0.57 -3.50 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 30 H 0.06 1.24 7.53 -2.39 -0.02 1.22 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.13 2.78 7.99 -2.91 -0.02 2.76 16 34 H 0.03 1.04 7.88 -2.39 -0.02 1.02 16 35 H 0.09 2.90 3.92 -2.39 -0.01 2.89 16 36 H 0.07 2.63 6.23 -2.39 -0.01 2.62 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 3.32 6.16 -2.39 -0.01 3.31 16 42 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.05 2.46 8.12 -2.39 -0.02 2.44 16 45 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.05 1.42 7.50 -2.39 -0.02 1.41 16 50 H 0.05 1.27 6.99 -2.39 -0.02 1.25 16 51 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -66.86 390.32 2.89 -63.97 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.88 Total: 19.60 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 4.83 Total: -39.38 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -4.08 Total: -80.13 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.76 Total: -10.88 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.86 2.89 -63.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232391362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.778 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds