Wall clock time and date at job start Tue Mar 31 2020 11:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38171 * 120.02713 * 2 1 4 4 C 1.38245 * 120.05109 * 180.30045 * 3 2 1 5 5 C 1.38285 * 120.11803 * 359.67629 * 4 3 2 6 6 C 1.38120 * 120.05025 * 0.04792 * 5 4 3 7 7 C 1.50708 * 120.02703 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47470 * 260.02326 * 7 6 5 9 9 C 1.46850 * 110.99880 * 45.78933 * 8 7 6 10 10 C 1.53031 * 109.51899 * 185.84033 * 9 8 7 11 11 C 1.53117 * 109.28164 * 300.81775 * 10 9 8 12 12 C 1.50700 * 109.57635 * 177.59360 * 11 10 9 13 13 H 1.08001 * 119.99785 * 245.71330 * 12 11 10 14 14 C 1.37878 * 120.00085 * 65.71784 * 12 11 10 15 15 N 1.31517 * 119.99977 * 8.68295 * 14 12 11 16 16 Si 1.86797 * 120.00050 * 188.68487 * 14 12 11 17 17 H 1.48507 * 109.47082 * 94.98581 * 16 14 12 18 18 H 1.48500 * 109.47109 * 214.98477 * 16 14 12 19 19 H 1.48498 * 109.47147 * 334.98346 * 16 14 12 20 20 C 1.53123 * 109.15935 * 57.65950 * 11 10 9 21 21 C 1.46841 * 110.99991 * 170.00149 * 8 7 6 22 22 C 1.38711 * 120.03063 * 179.72846 * 2 1 3 23 23 O 1.35903 * 120.05294 * 359.97438 * 22 2 1 24 24 C 1.42898 * 117.00048 * 262.78456 * 23 22 2 25 25 C 1.53002 * 109.47072 * 216.50921 * 24 23 22 26 26 C 1.53004 * 109.47021 * 96.51415 * 24 23 22 27 27 H 1.09005 * 109.47418 * 274.95400 * 1 2 3 28 28 H 1.09002 * 109.47295 * 34.94961 * 1 2 3 29 29 H 1.08999 * 109.47315 * 154.95593 * 1 2 3 30 30 H 1.07996 * 119.97510 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.94285 * 179.70044 * 4 3 2 32 32 H 1.07994 * 119.97791 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46845 * 20.02707 * 7 6 5 34 34 H 1.09005 * 109.46686 * 140.01669 * 7 6 5 35 35 H 1.09005 * 109.46054 * 305.85650 * 9 8 7 36 36 H 1.08993 * 109.46011 * 65.82251 * 9 8 7 37 37 H 1.09005 * 109.50089 * 180.88209 * 10 9 8 38 38 H 1.08999 * 109.53765 * 60.78448 * 10 9 8 39 39 H 1.08998 * 109.52099 * 297.75325 * 11 10 9 40 40 H 0.96994 * 119.99970 * 180.02562 * 15 14 12 41 41 H 1.08993 * 109.50283 * 182.40645 * 20 11 10 42 42 H 1.08992 * 109.53682 * 62.30650 * 20 11 10 43 43 H 1.09008 * 109.46350 * 294.17617 * 21 8 7 44 44 H 1.09002 * 109.46593 * 54.15310 * 21 8 7 45 45 H 1.09000 * 109.47189 * 336.51402 * 24 23 22 46 46 H 1.09000 * 109.46996 * 300.00412 * 25 24 23 47 47 H 1.08999 * 109.47007 * 60.00577 * 25 24 23 48 48 H 1.08998 * 109.46796 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.46998 * 54.66119 * 26 24 23 50 50 H 1.09000 * 109.47324 * 174.66257 * 26 24 23 51 51 H 1.09000 * 109.47007 * 294.66320 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1969 -0.0063 5 6 4.2752 0.0010 -0.0058 6 6 3.5886 -1.1975 -0.0001 7 6 4.3459 -2.5005 -0.0001 8 7 4.3789 -3.0477 -1.3630 9 6 4.7247 -2.0071 -2.3397 10 6 4.6076 -2.5756 -3.7556 11 6 5.5526 -3.7716 -3.9000 12 6 5.3994 -4.3733 -5.2732 13 1 5.0005 -5.3707 -5.3843 14 6 5.7687 -3.6504 -6.3877 15 7 6.4100 -2.5105 -6.2494 16 14 5.3582 -4.2899 -8.0941 17 1 4.0853 -3.6815 -8.5578 18 1 6.4502 -3.9297 -9.0338 19 1 5.2126 -5.7670 -8.0473 20 6 5.2022 -4.8198 -2.8402 21 6 5.3020 -4.1862 -1.4507 22 6 2.2011 -1.2009 0.0057 23 8 1.5233 -2.3788 0.0118 24 6 1.3389 -3.0146 1.2782 25 6 1.4382 -4.5317 1.1065 26 6 -0.0402 -2.6536 1.8340 27 1 -0.3634 0.0887 1.0238 28 1 -0.3634 0.8423 -0.5887 29 1 -0.3634 -0.9310 -0.4350 30 1 1.6584 2.1316 -0.0004 31 1 4.1195 2.1330 -0.0112 32 1 5.3551 0.0041 -0.0103 33 1 5.3648 -2.3285 0.3471 34 1 3.8504 -3.2087 0.6640 35 1 4.0426 -1.1641 -2.2291 36 1 5.7472 -1.6718 -2.1663 37 1 4.8795 -1.8075 -4.4798 38 1 3.5821 -2.8983 -3.9352 39 1 6.5819 -3.4416 -3.7597 40 1 6.6695 -2.0018 -7.0334 41 1 5.8989 -5.6551 -2.9102 42 1 4.1862 -5.1786 -3.0044 43 1 6.3220 -3.8407 -1.2815 44 1 5.0392 -4.9261 -0.6946 45 1 2.1097 -2.6760 1.9705 46 1 0.6674 -4.8702 0.4142 47 1 2.4207 -4.7889 0.7105 48 1 1.2980 -5.0166 2.0725 49 1 -0.8053 -2.9063 1.1000 50 1 -0.2193 -3.2123 2.7527 51 1 -0.0783 -1.5849 2.0454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232391698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:35 Heat of formation + Delta-G solvation = -44.303378 kcal Electronic energy + Delta-G solvation = -28177.500311 eV Core-core repulsion = 24654.492547 eV Total energy + Delta-G solvation = -3523.007764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45686 -39.63681 -38.45764 -36.00760 -34.18365 -33.95650 -32.83524 -31.52195 -30.93431 -28.29721 -28.06114 -27.49189 -26.01233 -23.88776 -23.53456 -22.88491 -21.93179 -21.41453 -20.33940 -18.72648 -18.44678 -17.22888 -16.95537 -16.53037 -16.39549 -16.12306 -15.66504 -15.28212 -14.93706 -14.81280 -14.72421 -14.33496 -14.27081 -14.16208 -14.00565 -13.61703 -13.56738 -13.39352 -13.10492 -13.07108 -12.97158 -12.92670 -12.66194 -12.50435 -12.44698 -12.24960 -12.16757 -12.07775 -11.93636 -11.88847 -11.57096 -11.33912 -10.75180 -10.71437 -10.63291 -10.41411 -9.60038 -9.35451 -9.08664 -8.11949 -6.20326 0.31151 0.36780 1.39099 1.41002 1.50900 2.43581 2.50506 2.91605 3.17854 3.22446 3.73290 3.87668 4.02008 4.09333 4.15995 4.21417 4.24183 4.29427 4.30182 4.40907 4.42577 4.51242 4.53470 4.58430 4.69043 4.76347 4.77274 4.79678 4.83555 4.86426 4.93672 4.96766 4.98160 5.00708 5.06756 5.12528 5.22144 5.29314 5.30419 5.35327 5.41031 5.50712 5.53533 5.54452 5.62264 5.66430 5.92462 5.95348 5.98689 6.26790 6.32697 6.40249 6.79381 6.91422 7.46122 8.96613 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.003759 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.738610 B = 7446.659930 C = 8009.201200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.111 4.111 4 C -0.127 4.127 5 C -0.119 4.119 6 C -0.115 4.115 7 C 0.101 3.899 8 N -0.525 5.525 9 C 0.079 3.921 10 C -0.086 4.086 11 C 0.045 3.955 12 C -0.533 4.533 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.949 3.051 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.097 4.097 21 C 0.067 3.933 22 C 0.105 3.895 23 O -0.334 6.334 24 C 0.084 3.916 25 C -0.149 4.149 26 C -0.168 4.168 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.011 0.989 37 H 0.039 0.961 38 H 0.029 0.971 39 H -0.007 1.007 40 H 0.260 0.740 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.021 0.979 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 5.091 20.453 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.145 4.145 5 C -0.137 4.137 6 C -0.116 4.116 7 C -0.025 4.025 8 N -0.250 5.250 9 C -0.049 4.049 10 C -0.124 4.124 11 C 0.027 3.973 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.184 4.184 15 N -0.559 5.559 16 Si 0.775 3.225 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.135 4.135 21 C -0.061 4.061 22 C 0.061 3.939 23 O -0.251 6.251 24 C 0.029 3.971 25 C -0.206 4.206 26 C -0.226 4.226 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.011 0.989 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.103 0.897 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.402 4.923 20.096 23.624 hybrid contribution 1.157 0.186 -1.116 1.618 sum -10.245 5.110 18.980 22.165 Atomic orbital electron populations 1.20755 0.89481 1.03083 1.02901 1.20455 0.97854 0.92228 1.01286 1.21241 0.94236 0.97749 0.99723 1.21379 0.94642 0.98296 1.00141 1.21144 1.00191 0.92013 1.00392 1.20190 0.93686 0.95434 1.02316 1.20976 0.97609 0.93299 0.90643 1.62022 1.51140 1.08168 1.03646 1.21908 0.96725 0.93648 0.92577 1.21325 0.98306 0.99035 0.93756 1.18643 0.93245 0.92388 0.93073 1.21565 1.41836 1.01119 0.92602 0.93108 1.25728 0.94494 0.95469 1.02723 1.70089 1.39355 1.15970 1.30485 0.85676 0.77850 0.78933 0.80032 1.20343 1.20826 1.19104 1.21509 1.00270 0.97916 0.93755 1.22067 0.92965 0.93067 0.97974 1.18463 0.89123 0.85796 1.00564 1.86100 1.74341 1.33667 1.31024 1.22459 0.97648 0.93568 0.83428 1.21932 1.02524 0.93039 1.03118 1.22347 0.96147 1.02366 1.01705 0.89847 0.90533 0.92037 0.83273 0.83663 0.85792 0.94223 0.89416 0.91907 0.97104 0.94222 0.95189 0.98890 0.93130 0.92695 0.93174 0.96034 0.89379 0.92290 0.92404 0.92878 0.88958 0.92020 0.89706 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 8.69 71.23 0.62 -1.41 16 2 C -0.12 -2.85 5.89 -19.77 -0.12 -2.97 16 3 C -0.11 -2.37 9.72 22.26 0.22 -2.16 16 4 C -0.13 -2.82 10.04 22.28 0.22 -2.60 16 5 C -0.12 -3.12 8.64 22.25 0.19 -2.93 16 6 C -0.12 -3.34 3.70 -19.77 -0.07 -3.41 16 7 C 0.10 3.02 5.07 85.56 0.43 3.46 16 8 N -0.53 -19.30 4.80 -900.91 -4.32 -23.63 16 9 C 0.08 3.34 4.80 86.32 0.41 3.76 16 10 C -0.09 -4.37 5.19 30.64 0.16 -4.21 16 11 C 0.05 2.39 2.03 -11.46 -0.02 2.37 16 12 C -0.53 -30.87 8.49 25.60 0.22 -30.65 16 13 H 0.05 2.90 7.76 -2.91 -0.02 2.88 16 14 C 0.01 0.83 5.24 84.65 0.44 1.28 16 15 N -0.92 -55.54 12.16 21.45 0.26 -55.28 16 16 Si 0.95 45.33 29.55 68.60 2.03 47.36 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 21 C 0.07 2.42 5.42 86.33 0.47 2.89 16 22 C 0.10 2.97 5.50 22.51 0.12 3.09 16 23 O -0.33 -9.51 8.11 -92.46 -0.75 -10.27 16 24 C 0.08 1.76 2.44 30.60 0.07 1.84 16 25 C -0.15 -2.92 9.49 71.98 0.68 -2.24 16 26 C -0.17 -2.71 8.93 71.98 0.64 -2.07 16 27 H 0.08 1.26 6.93 -2.38 -0.02 1.25 16 28 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 29 H 0.06 1.36 7.29 -2.39 -0.02 1.34 16 30 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 31 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.12 3.08 8.04 -2.91 -0.02 3.06 16 33 H 0.04 1.12 7.94 -2.38 -0.02 1.10 16 34 H 0.09 2.38 5.60 -2.38 -0.01 2.36 16 35 H 0.06 2.60 6.03 -2.38 -0.01 2.59 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.04 2.24 6.97 -2.38 -0.02 2.23 16 38 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 39 H -0.01 -0.42 8.09 -2.39 -0.02 -0.44 16 40 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.09 2.66 8.12 -2.39 -0.02 2.64 16 45 H 0.06 1.21 7.53 -2.39 -0.02 1.19 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.05 1.20 7.21 -2.39 -0.02 1.18 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 0.95 6.21 -2.39 -0.01 0.93 16 Total: -1.00 -67.03 390.08 2.95 -64.08 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.88 Total: 17.76 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 4.86 Total: -40.02 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -4.06 Total: -78.91 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.75 Total: -10.27 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.03 2.95 -64.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232391698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.774 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds